Array 1 423802-421672 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMXZ01000001.1 Ignatzschineria indica strain KCTC 22643 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 423801 28 100.0 32 ............................ ATATAGTTTTCGAGTTGCTCTTTCGTTATTTC 423741 28 100.0 32 ............................ ATATCCTCTTTGCGCGCTTGACTTGTTCTGTC 423681 28 100.0 32 ............................ TCATCGAGGTGATCAGAAGCTGTTTTGGGATC 423621 28 100.0 32 ............................ AAATAACATTTATGCGTAACAAAGATAGATAA 423561 28 100.0 32 ............................ ATCTTTCTTGTGATGTTAGTCGTGTTTTGGAT 423501 28 100.0 32 ............................ CTTTGAGTTGGACTTCGACCACGACATCAATG 423441 28 100.0 33 ............................ AAATTTCTACATTGGATGCATTATTAAGACTCA 423380 28 100.0 32 ............................ GTAATCGTTGTGTCTTCGCCGAGATAATTAAC 423320 28 100.0 32 ............................ AGAGGTATAAACAATGTGGGAATGGTTGGACA 423260 28 100.0 32 ............................ ATTATTCAATAACCCACAATAGTTGATTGGAT 423200 28 100.0 32 ............................ CAGTCAAAATCATCAACATCTGCACACTCGAC 423140 28 100.0 32 ............................ ACTCGGACAGGATGTGAATATCGGCTTTATCG 423080 28 100.0 32 ............................ TAATCGATCAGCATTCCCCAGTTTTGATGTTG 423020 28 100.0 33 ............................ GAAGATCGATGCGCCGATGAATGACGAGTATCG 422959 28 100.0 32 ............................ ATCTTCAATCTTTCAAACGCTTCGTTGATGAG 422899 28 100.0 32 ............................ ACATAATCTATAGTAACTCTTGTAAAACCATC 422839 28 100.0 32 ............................ ATCAATACAATACAATCAAAATGCGGGGTTAG 422779 28 100.0 32 ............................ ACATAGGTTCGCCGACGTACGACAAATATTGA 422719 28 100.0 32 ............................ AATTAATGTGGGTTATTGAATAATGGCACGAT 422659 28 100.0 32 ............................ ACTCGCTCTAATGTTATGTGACATGATCCGCC 422599 28 100.0 32 ............................ AGTATGTTGAAGCCGTTACCTCTCACAATATC 422539 28 100.0 32 ............................ ATTTACTCATGATAGTTAAATTTTTTAGTGGT 422479 28 100.0 32 ............................ AAGAAAGATCTCCATTACGATTAAACCATATC 422419 28 100.0 32 ............................ TAACTTCTCTCTAAACTCTGAAATTTCAAAAA 422359 28 100.0 32 ............................ AATAGCTAATTTAACGTCAATATATGCGCTTA 422299 28 100.0 32 ............................ TAACGCTCTTTGAAGAATCAGAATGGCTTGCC 422239 28 100.0 32 ............................ AATTAGAAATAAACTCACACGTTGAATTTGTC 422179 28 100.0 32 ............................ AAAGATTTTAATAATCACATTACGTTTATTAT 422119 28 100.0 32 ............................ TTTAAAAGATAATTTTCAAAAAGTTATCAACT 422059 28 100.0 32 ............................ TCTTGAGTGCGAATCGCCAAGTTTTTCGGGCT 421999 28 100.0 32 ............................ TCTTGAGTGCGAATCGCCAAGTTTTTCGGGCT 421939 28 100.0 32 ............................ ATTCAAAACATCAACATTTAAGATGTCTTGAG 421879 28 100.0 32 ............................ GAGTCGATACATAATTCTGCTCTCTACTAAAA 421819 28 96.4 32 .......A.................... CAGTTTTGATCTCGTTGTATAGAGATATCCAG 421759 28 100.0 32 ............................ AGATAAGATAGGTTTGGATTTAAATGATAATA 421699 28 82.1 0 ...A..C.TG...C.............. | ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TTAGAGCGATTGTCGGATTATGTTCATATTCAATCAATTAAGGAAGTACCTAATAAAATTGAGAGTTATGCGAAATATCAGCGCTATCAGTCTAAAGGGGATGCTCGGTTAGAGAAGGAAAGAAGAGGATATGCTGAACATTACGCTCAACAAAACTCTGTCTCTATCGAAGAAGCGTTAAACAGATATTCTCACTGGGAAAGAAGAGAAGTCAATTTTCCTTATATCCAAATAAAGAGTTTACAATCTGATCAAAACTTTAAACTTTTTATTAAAAAAGAAATTGTTAATGTGGATTCAGATAATAGTTTTAATCAACTCTTTACAACCTATGGTTTATCTGCTGGGGGAGTTGTTCCCGAGTTTTAACCATTATTTTTTGCTCTTTAAAAAATTGCTTATAATTCAATAGGTTATAAAAAAGGGAAAAATCATTGGTATTTTAAGGTAAAATAGCCCTTGTGCCAGATTTTTCCTTTCTTTTTGGATTTTAATCTATT # Right flank : TCATGAATTCCCTTTACAACTTTAAAAAACAGTGGGGAATTATCTCTTAAATCGTTACCTAAAACAGGTTAGGGCAGATAGAAAAAGGCCGTTAATATAACGGCCTTCTCTTTAGGTTTAATCTGATATTAATTAATGATTAATGAATCACCAATTAGAATGGAGCGTCGATATCGACAACGTCTACGAGTTTGATGTTAACGAACTCTTTAAGACCTAAGTCGATCAATTCGCGGCCATAACCTGAACGGCGAATACCACCGAATGGGAGGTCTGCTTTAACCATTGTTGGATGGTTGACGAAAACCATTCCTGTTGAAATTTGATTTGCAACACGACGGCCACGCTCATTATCTGAAGTGAAGACAGATCCACCTAAACCAAATGGTGAGTCATTCGCGATGCGGATTGCATCAGCTTCATCTTCTGCTTTGATAATCATCGATACAGGGCCGAAGAACTCTTGGTAGTATGCAGGATTATCAGGTGTTACATTTGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 643431-644297 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMXZ01000001.1 Ignatzschineria indica strain KCTC 22643 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 643431 28 100.0 32 ............................ TTCTGATAAGATTCGGCCGCCTTGACCAATAC 643491 28 100.0 32 ............................ TATGTTTCAGAATCACAATTAGATCCGCGTGA 643551 28 100.0 32 ............................ GAGTTGGTGCATTCAAGATGGGTGCAGAAAGT 643611 28 100.0 32 ............................ TTGCTCGAGGAGTACTATTATAGCGTGGAGGG 643671 28 100.0 32 ............................ AAATATGAATTTTGACGGCGCTATCTCTATAT 643731 28 100.0 32 ............................ TGATTTAGTGCGCGTTGTTGAGCGTGCAATTG 643791 28 100.0 32 ............................ CTGCGCAATTGATAGACTTATAGTCAATCTTT 643851 28 100.0 32 ............................ AAATTAAACTTCTATTAATTCTTGCTCTAATT 643911 28 100.0 32 ............................ GTATTCATCTTCCCGAATCTCTTCAAATGTGC 643971 28 100.0 32 ............................ AGCTCATTAATGTGATATTTAGGGGCAAACCA 644031 28 100.0 31 ............................ CAACCGCTACCGCCCGTTTCCGCGTCTGCTT 644090 28 100.0 32 ............................ CGAAAGCCCCTGTCTAAGCCCTTAGAGCATGA 644150 28 96.4 32 .................T.......... TCTTACAAAAGCACTGCGTTATGCTCTTCTAG 644210 28 100.0 32 ............................ AGCTTGGTGTGCCTTGTAGGATTTGAACCTAC 644270 28 96.4 0 ........................T... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.5 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : TCAACCTATCATTACCCATATCGCCTTAAAACCCACCTCAAGCCTTCGCTTAGAAGGAAAAACTGTGGATATTGACGGCAATGAGACATCAGTCATCACCAAAGGGCGACACGATCCATGTGTCGGTATTCGCGCAACCCCCATCGCAGAAGCGATGTTAGCGATTACCCTGCTCGATCATGCACTACGCCATCGCGGACAGACCGGCCAATAAATATTATCGATCAATGAGCCTCTTGACCTATCGTTCATCATAAATTACGCTTCAATAGAGAGGGAGGTTCTTATCACCACTATTCTTCACAAAAGTAATAAGAACTTCTTTACAGATGGGGATTAATATGATTTCAAGGTATTAATCCTTTTTAACCTTTATTTTATGCTCTTTAAAAATTTAGCAATAAATCAATAAGTTACACAGCATGAGAAAATAATAGGTTTTTAAAGGCAAAAGCGCCTTAAACTTAGACTACTCAGTCCTTTTAAGGCTTAAATCTATA # Right flank : ATATTTCCCCTGGAAAGAATGTGGGGTACTGATCATTGTGGCACATGGAGAGGCTGAAGAAGAACCTCGATGAGCTTTGATGTTATCGGCTTCACCGAGGTTTGCTGCAAAAAACGGCCTTTGGCACAAAATGCTAATTCATGTTAGTTTTTTGCGAAATGATTGGCATATTGTTACAACTGTTTAATAGGTGTTTAAACGTTTATTAAACAGCCGTTTAAAAGATTAGGCACTTTCAACTTTAAACAGTTAACTATTAAAAAATGATAGGTTTTAATAGTTCAAGCAAAAACACTTCAGAGCTGTTGCAATGACAGCCTTTGAAGTGTTTTGTTTTTATAGAGAGGTTGAAAGTGGGTTGTAGTTGTTATTTGTAGGCTACTTTAAAGTTACGGCACATTACGACCATGCCAAACAACTCTACCAATAGCACCAAAATCGTTTGGTTGATTGCTTAGATCTATCTCAAAGGGTCTATAGACATTATTGGTGCTTGAGAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //