Array 1 675149-676044 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021934.1 Fusobacterium nucleatum subsp. polymorphum strain KCOM 1260 (=ChDC F218) chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 675149 30 100.0 36 .............................. TTTACTTTATTTAAATTTTCTTTTAATTTATCCATA 675215 30 100.0 36 .............................. GAAATTTTTACAAAACACAAACTTGCTGAGTCTCAA 675281 30 100.0 38 .............................. TAGATCATCAAGATGTAGCTCGTAGTGGTGGAAATTTA 675349 30 100.0 35 .............................. ATTTTTCTTATTTCTAGCATCATGTCCTCCTGTTT 675414 30 100.0 38 .............................. ATATTTTACAAGTTTTTTTCTCTCAAAGAGGAGGAAAA 675482 30 100.0 37 .............................. TAAGATTTAGGTTTCCTAAAAGCAAGTACGATATCAG 675549 30 100.0 36 .............................. GATTTAAATAAAGTTTGTGAAACTGGGGCAAGAATG 675615 30 100.0 38 .............................. TCATATTTTTTTCCCTGATCTCCATTAGGTTTTTTAAA 675683 30 100.0 35 .............................. AAAATTATATTTTCAGTTTTTAAACCATTTTCTTC 675748 30 100.0 35 .............................. GTAAAAGAGGTTGAAGGACATTTGAAAAGAATTAT 675813 30 100.0 36 .............................. AATAAAACTGCTTGTGATGAAAATAACATTGCTAAG 675879 30 100.0 42 .............................. TAAGGCTATTGAAACTAAAATTGGTGCCATAAATGGTTTTAA 675951 30 100.0 35 .............................. ATTCCACAGATTAGTCTTATTTCTAAATTAATTGA 676016 29 86.7 0 .C.....................-AA.... | ========== ====== ====== ====== ============================== ========================================== ================== 14 30 99.0 37 ATTTATGTATTTCTATATTAGAATTTAAAT # Left flank : AATCTTTTCAAATGTGGTGGTGATAAAATGTATGTAGTTGCAGTGTATGATATTTCATTGGATGAAAAAGGTAGTCATAATTGGAGAAAAATTTTTGGAATTTGTAAAAGATATCTTCATCATATTCAAAATTCTGTCTTTGAAGGAGAATTATCAGAAGTTGATATTCAAAGATTAAAATATGAAGTTTCAAAATATATTAGAGATGATTTAGATTCTTTTATAATTTTTAAATCAAGAAATGAAAAATGGATGGAAAAGGAAATGCTAGGTTTACAAGAAGATAAAACTGATAATTTCTTATAAAATTTATTGTCTACCTCTCATAATGTAAAATTACTGGAAGATTGACAAAAGTCAAAAAAGTCTTTATTTATAAATAAATTTAAGAAAATAAAAAAATTTTAAGAAATTAAATTTTTTTATTTTTTACTGAAAAACTTACATTGACAAAAAGATATAAAAAAAGTATTATGTAGGAGTAGCTTTTTTAGGTAGCG # Right flank : TACAGAAGAAAGGGATTGAAAAATAAAAACTTAATGCTGTTATATAACAAAAGAATAAATAAAAAGTTAAAAGGATTAACTCTAGTTTTTTATATAAGTTAATCCTTTTTAATAAGTTAAATTAAATTTATTCAATTTTTTAAGGGGAGTACATTTTTTATTATGTTAAGTATAGCTTTATAAAGTAAACTAAGAATTAAGTATTCATAAAGTAACAGAAAAATTAAAAAAACGAAATTCAACTAAAATATTAATATAATGAACACAAAAATTTAAGATAGAAAATAAAAATTATCAATTATTAAATTAATAAAATTTTATTAAAAATTAAGTGAATTTTATAATAAAAATATTGCATTTAATCGTAATTGGTGTTAATATATACTTAATAAATTTGAATGATAAATTTAAAGTTTTATCTACTAAAAATAGGGAGTGATTATAATGAGTTTTTTAGGGCAAGTTAGAAAAAAAGCCTTACAAGCAAACAGAAGAATAGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTATGTATTTCTATATTAGAATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:90.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 1473502-1468928 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021934.1 Fusobacterium nucleatum subsp. polymorphum strain KCOM 1260 (=ChDC F218) chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 1473501 36 100.0 40 .................................... TTATTTGAACTGTAACATAATTCACATTTATATTTTGCTC 1473425 36 100.0 40 .................................... TTAGCCTCCCTTAGTGCCGAATTTATCGGCTTTTTATTAT 1473349 36 100.0 42 .................................... TTGAATGAATTAATTATATCTTTTAATGAAGAATTAAAAAGA 1473271 36 100.0 39 .................................... TAGATAAATCCCATTTTCAGGACTATAACTATCTAATTT 1473196 36 100.0 36 .................................... GGAGAAAAATCACCATTATAAAAGGGTGCAAATACA 1473124 36 100.0 38 .................................... AGATAGAATTGAAAATCTAGCGACAAAACATTTTGTAT 1473050 36 100.0 43 .................................... TTTTTTAATTTCTTTTCAAGTCAAGGTATTTAAACCTTTTCAA 1472971 36 100.0 35 .................................... GGACACCATCATCTGTATCTCTTGCATTTTGACAA 1472900 36 100.0 40 .................................... TGATTTTTAGCAAGTTCTCCAACTGTAAAATTATTTACAT 1472824 36 100.0 41 .................................... TCTATATTATTTTCTATTTGTTGCAAGTAAAAAATTAAATA 1472747 36 100.0 45 .................................... TAATAAATCTACCATACCATTAATAGTCATTCCTGCTATTTTTGC 1472666 36 100.0 36 .................................... TTTATTTTCCAATGTACATCTAATATCCTAAAAGGA 1472594 36 100.0 39 .................................... GCTAAAACATATTGATTTTTTCCCATTTCTTCCATCACT 1472519 36 100.0 43 .................................... ATTACAATATCTTTATACTTGATGAAATGGATGCTACGCTATC 1472440 36 100.0 36 .................................... TTTATTTTCCAATGTACATCTAATATCCTAAAAGGA 1472368 36 100.0 39 .................................... GCTAAAACATATTGATTTTTTCCCATTTCTTCCATCACT 1472293 36 100.0 38 .................................... TTAAATGGAATGAAATTATATCTGAAATATCAAAAGAC 1472219 36 100.0 39 .................................... TGTCTAGTGTCAATTCTCCATTAGCCTCTATAATACACT 1472144 36 100.0 38 .................................... GATAGAAATATTTTTATTTTTTAATAAATCTTTAAAAA 1472070 36 100.0 38 .................................... TCTCATATGCTCTTCATTTAAGAGTCTCCAATTACATA 1471996 36 100.0 37 .................................... TCAGTTTGAAGCTGTTATGCTACAAAAATTAAAAGAA 1471923 36 100.0 37 .................................... TATGATCTCCATTTTTTACAACTATCTGACCAGCACT 1471850 36 100.0 36 .................................... TATCTTCATATAGTTCTTCAATTATAACTCTTTTAG 1471778 36 100.0 41 .................................... TGAAGATCTAGAAGAAGTTGAGGGAATCAATAATATAAAAA 1471701 36 100.0 37 .................................... CTGCTTCTCCATCACAAGTGCATACCCATATTAATGC 1471628 36 100.0 40 .................................... AAATTAAGTTCTGCTCTATTTTCAAAGTCTGCATATTCTG 1471552 36 100.0 42 .................................... TAACTTAGATAGTCTTAAATATCCTGAAATAAAGAAGAATAT 1471474 36 100.0 43 .................................... TCTCCTACTACAGTAGTCATTTTACCAGCAAATACTCCTAAGT 1471395 36 100.0 40 .................................... CTTAGCAGAAACACCTGATAATGATGAAATTGTAAGTTTA 1471319 36 100.0 37 .................................... TTCTACTTCAGTACCCATACGCCAAGTAGAAGATATT 1471246 36 100.0 41 .................................... GTGTTGTTAATTTCCCATAATAACATATCTTTAATATTAAA 1471169 36 100.0 40 .................................... TTGAATATATCATATTTTCATTTATAAACTTTTTTAATTC 1471093 36 100.0 41 .................................... ATTTTCATTTTAAAACCTCCTAAAAAATTTATTATTTTACA 1471016 36 100.0 39 .................................... TCAATTATACCTAATTCTTTAAAGTTTATATTCATTTTT 1470941 36 100.0 34 .................................... TGTAAATGTAATATGTTTTATCATTTACATTTAA 1470871 36 100.0 41 .................................... TATTCCATTTTCTTACTTTTCTACTTAATTGTTCATAACTT 1470794 36 100.0 39 .................................... TTCAAGAAAATAGTAAACACTTGAATATTAAATATAGAA 1470719 36 100.0 44 .................................... TTAAAAGAAACATGATATTATAATAATATAGAAAATAAAAATTT 1470639 36 100.0 41 .................................... TTTAATACTGATATATTTCCCTATGATGCTGGGATAAAAGA 1470562 36 100.0 36 .................................... TTTTACAAGTACGACTCCCATAATCTCCTCCTATTT 1470490 36 100.0 36 .................................... CCTAAACCATTGATTTTAAATTCTTTTTTCATATTA 1470418 36 100.0 39 .................................... TTTTTTCTCCAGCATATATACCTCTTTCAGTTTTAACTT 1470343 36 100.0 46 .................................... TTTATTATATCCTTTTCTTGTTCTAAAATGTTTTTTTCGTGTTCTC 1470261 36 100.0 39 .................................... TCGGATGGTCGTGAAGGTTGCAACTTCTAAAAATTGCAA 1470186 36 100.0 45 .................................... TTTAGAACTGATAAAAAATTAATGAAGTTGTGGAATGCTAAGCAA 1470105 36 100.0 44 .................................... ACACCTTTCTTTCTACGATTTACTATTTGATGAAAACGCAAAAA 1470025 36 100.0 40 .................................... CAATTCAGAAATAGATATTGATGGATTAAATGAAGTTAAA 1469949 36 100.0 43 .................................... TTAGTTGTTTTTTTAGGTTTATTAGAAAATACAACTGTTCCTT 1469870 36 100.0 42 .................................... TCTTGTGTAAAAGATATTGGACATCCTTTTACTGGTTCATAT 1469792 36 100.0 42 .................................... ACGATAATGGATTTGAAGTAAAAGATTTGAAAGAAAAAAAAA 1469714 36 100.0 43 .................................... TATATTATAGAAAAGCAATTAATAACACTCTTTTAAGCCGCTA 1469635 36 100.0 36 .................................... TATAAGTTGAATGCTTTTCATATTCTTTTTTAGCTT 1469563 36 100.0 41 .................................... ACTATCTGGGCAGCAATTCAAAGAGATAGCAAAATAAACTT 1469486 36 100.0 40 .................................... TATCTACCACCCCCAATTCTATCAATGATAGCCTTTTCTA 1469410 36 100.0 38 .................................... TCTTTATCTTCTTTAACTGCCATATAAATACTACTTAA 1469336 36 100.0 36 .................................... TCTATTTACAGTTTACTATGATAATATCTATAATGA 1469264 36 100.0 39 .................................... GGTAAAGCCTTTTATACCTATGGTATAAACCTCATTTTT 1469189 36 100.0 39 .................................... GAAAATCATCTTCCATTTTTGATAATACAATTTATTATA 1469114 36 97.2 38 ..............................A..... CCATTATCTGTGCCTTTATTAAAACTATCTTTATTTCT 1469040 36 100.0 41 .................................... TATTTCTATAAACTTCTTCTTATATATCCCATCTACTTTTA 1468963 36 72.2 0 ......G.............C.......TTCCTTTT | ========== ====== ====== ====== ==================================== ============================================== ================== 61 36 99.5 40 ATAAGAAAGAATATAACTCCGATAGGAGACGGAAAC # Left flank : GCCAATATATACAAATCAGTTTTAATCAGGTGATATTTATGGATAATTGGGATTTTTTAGATGAAGATTTTGAAAAGGAAGTTTTTGAAGATAACTTTACGGTTATCATAATTTATGATATTATATCTAACAAGAGAAGAACACAATTATCTAAACTTTTGAGTGCATTTGGATTTAGAATTCAAAAATCTGCATTTGAATGTCTTTTAACAAGAGAAAAATATAAATTACTCATTGAAAAGATTGATAGATATGCAAAACCAGAAGATTTAATAAGAATCTATAGATTAAATCAAAATGTAGTAACTCAAATTTATGGAGAAAAATTAGAAATTGAAAATGAGATGTACTACTTTTTCTAATGAAAAGTAGACGATATTATAAAAATGGGAAGTTCAATATGATTTTTGATAAAACAAAATATAAATTTTTAAAATTTAAAAAGTCACACGATAATAGCTTTATAAAATATTGCAAACAAAAGTTTTTTTGAGTATAGG # Right flank : ATTGACAAAAAATCAATATATTTTTATAATACTAATATAAGAAAATAGAATTCTAAAAAAAATAAAAAAGCCTAAAAATACTATGATATTTTAATATTTAATCAAGAATTTCTCACAATTGAAATTTTTACAAAAAGAAATAAAAACTATTTAAGGAGGAATTTTATGAAAAAATTACTATTTTTTACATTGTTTATAGGAATTTGTATGAGTGGAGTAGCAAGTACAAAAGAAAAAAATCCAAATCTTTTAAAACAAGTATATAAAAAGGAAGAATTGATAACATTGGACAAAGAAAAAGTAGCAGGAGGAAATGGAACTTTACATGGAAAATTTGCCTTTACTAGAGATATGGCTACTGAAGAAGATGCTATCAAAGAAATAGGTTGGATGACACTAAATAAAGGTGAATCTGTTGGAGTACACCCTCATAAAAATAATGAAGATACTTATATTATTGTTTCTGGAGAAGGAATCTTTACAGATGGTTCTGGAAAAGA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAAGAAAGAATATAACTCCGATAGGAGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //