Array 1 416971-416725 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIDE01000001.1 Fimbriiglobus ruber strain SP5 contig01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ================================================ ================== 416970 26 100.0 47 .......................... GCCGATGCCCGGGACTGCGGGGAAACCGGGATCGAGGGTTGAACCCG 416897 26 100.0 48 .......................... ATCGGTGTTGGGGGATCGCAGGCGACCAGCCTCAAATCACGATCAGAT 416823 26 92.3 46 ..T.G..................... ACCGGTCCCGGAACCACGCCGGAACCACGATCGGGGCATGAGTCCC C [416819] 416750 26 88.5 0 ....GG.A.................. | ========== ====== ====== ====== ========================== ================================================ ================== 4 26 95.2 47 GACGAAATTGGGTTCGTTTGGTAAAA # Left flank : CGGGCGAACGGCCTACGTCACCGAAGTCGAACACCTGCGCGTCGTGCAATTCCGCGTCGATCGTCCCGGGCTGGCCTGGCAGCGGTGGCAAAAGAGTTCGTGATTCGTGTCGGGAAGAAGTGTCGCAGAATCGCACGGCTGGAGCCCGGTCGTCCCTGTGAGACACGCAATATTCGCGACATCTCACGGGACGCGACAATGGTCCCAACGGCGAGGAATCAGAACCCCCGGAGTACTGCTCCCGCACCATCAGTATGTTGCGGAGTTGTTGGTAGTAGATAGCCAAGGAAGACCGGCTGAAGCCGGGGACTCCAACGCCGAACCAGCGGCTCTGGGGTCGGAGTCCCGGCTTCAGCCGGTCCGCGAACGCCGATCTCTGACCAACAACTCGCAGGTCGTTCCGGGATTCCCGGTGTGAACCGTGCCCCGACGGTTATCCTGTACGTGTGTTCGCGAGGTGGGTGGGACATTGCTTGGGTAGGGTACCCGACACTCGGACG # Right flank : ACCGATGCCGGAGTTTCAGCCGGCTGAAAGAGATTCCGGCTTCTTTCGAGATGTTGGTAACAGACAGGATGGGCGAACCCGGGGCGCCGGCCACTCGCTACCTTCACCCGTAACCACACCACCAGCCACCTTCACCTCCCCAATTGCACCGCCGTCTGGATGTCAAGCGTCTGTTGCCACGCCAGGAGTGCGTTCCGCCACTCGCCCCACACCGTTTCCTGCTCGGCCAATACCTTCTCAACATCCTCGGAATACTGTCCCGCGGACGCGAGACGGGTGGCGAACCCGTCGTCCGAGCCGGCCGCGAGAATCGGAGCCGGGAGTGACGGTTCGCCGACGGGCGTAGGTGTGGTGGCCAACACTTCCGCAAACTTCTGTTCGTAACCGTCCAGGGACGCCAAACAGACTCCGATCGCCCGCTCCACCTCGTCCAGAGTCCGTTCCCATTCACGGCCGCGCTGTTCGCCCATTTTTCACCCCCTACCGGATCGCACCACGGG # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACGAAATTGGGTTCGTTTGGTAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 38222-48651 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIDE01000014.1 Fimbriiglobus ruber strain SP5 contig14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================================== ================== 38222 36 100.0 36 .................................... TTCTTCGCCTCATCCGCTACACTCTTAAGAGCCTTT 38294 36 100.0 36 .................................... CCCTTCGGTGTGGTCGCGGCCCGCCACGCATACGAC 38366 36 100.0 38 .................................... AGGTACTTCCGCCGCCCGAACTTCCCGTTACGCGGCGG 38440 36 100.0 36 .................................... CGCAGTTCAGCGTTTCCCCCGGTTACTACGGTGGGA 38512 36 100.0 37 .................................... CCCATTTTCATCGTCGGACGGTATACCGTTGAACGTA 38585 36 100.0 36 .................................... GTCTTGCGCGACATACAGACGCCTCCCGTGTTTCGT 38657 36 100.0 36 .................................... AATGGCCAAGACCCGCTCCGCGAGGCTCTGGCCGAG 38729 36 100.0 39 .................................... TCGGACCGGGCTTCGTCGCGGGCTTCGACGATTTCCCCG 38804 36 100.0 36 .................................... CCGATCGGTCTGTTAGAGGAAATCGTGGGGTATGTG 38876 36 100.0 37 .................................... CTTTGTTCGCTGGCGTCGTTAAGGCTCGTGACGTGCC 38949 36 100.0 38 .................................... CCGGGCGGTCGTCAGGGGGTAAAGTTCGCCGTCAGGTC 39023 36 100.0 36 .................................... GACTTCCGTTCGACCGACACCCGTGATTCGTAGCCG 39095 36 100.0 38 .................................... GCCGATATTGACAAATTCATTCCGCCAGATGTGTTGAG 39169 36 100.0 40 .................................... AGCCACGCAACGTACATCGCGCGGGCGATGAAGCGAAAAG 39245 36 100.0 37 .................................... CTTGATCAACAGCGTGTACAAATCCCGCTTGGGGATC 39318 36 100.0 37 .................................... GTTTTCTTCGGCATGGCAACAAACCATTGTACTTGTC 39391 36 100.0 36 .................................... GTCCCTATGGTGCTGACGACGTTCACCAAGAGACTC 39463 36 100.0 38 .................................... ATTTGTTCGGTCCATATTACGAGACGTTAGTGGTGGAC 39537 36 100.0 41 .................................... ATCGACTGTCACCGCGAGGGCGCGGCGTTACGGGCGATCAT 39614 36 100.0 39 .................................... TTCGTCCCAACGTACCGGGCCTTTAGCCGCGGCGCGAAT 39689 36 100.0 37 .................................... CCCAACTTGGAACGCGGAGAAACTTCCACGAGTTCCC 39762 36 100.0 40 .................................... AGCTCCCCATTCGGAGGCCCGCACGATGACAACTGAGCAG 39838 36 100.0 39 .................................... GGCCGTACAGAATCGCATGGCCGGCGTCGACCAGGGCAG 39913 36 100.0 38 .................................... ACCCACGTGAAGTCGGTCAACTTGGGCGGGTTCAGGGG 39987 36 100.0 38 .................................... TCGTTCCAGCTCGGGTTCCTCCCGCAGCAGTACGGCAC 40061 36 100.0 37 .................................... GCGACCGGGGCGGCCGGTGTGACCACGGGCGTCGGGC 40134 36 100.0 37 .................................... CGTCGTACAAGGGCGACTTCCGATACCTGCACAACGG 40207 36 100.0 38 .................................... GGCATCAGGAACTTTGTGACGTTATCCGCCCCGACCAG 40281 36 100.0 43 .................................... GCCGGGGGCGGTTGTTCCGGGCGCGTTCGGATTAACTGCGGAA 40360 36 100.0 40 .................................... GCCGGGGTTGCGGCGACCGGGCATACGCGGGACTGAGCAT 40436 36 100.0 40 .................................... TGTCCGCCCTGGTCGTCGTGTGGGCGACCGGGCGTGCGTT 40512 36 100.0 39 .................................... CGCAACCGGGGACTCAGCTCCCGGGCGCTCGACGGGTAC 40587 36 100.0 36 .................................... GTCGCCGGCATAGGCCGCCTGGAGCATGGCGGCGAG 40659 36 100.0 36 .................................... CTCCTCGAAGCGTCGGCAGCGATCTTTGAAGATCTC 40731 36 100.0 38 .................................... ACCAGAGCCAGACTCAGCGGGGCTTGCAGTGCGTCCAG 40805 36 100.0 37 .................................... CGCTCCTCCAGTGTCGGGGGCGCCTTGGGCAACCCGA 40878 36 100.0 37 .................................... GCCCGCCGGTTCATCTACGGCGAGTGTAAGCGGATCG 40951 36 100.0 37 .................................... GGTGGGGCGCCCGTCGGCCCGACCATAAAGCCGCAAC 41024 36 100.0 37 .................................... ACCGCATCCTCGTACTCGTCGTTGGCAGGCGAACCGT 41097 36 100.0 38 .................................... GGCAAGCGTCAGCTTCGCGGCCACGGCGGACGGGGCAC 41171 36 100.0 37 .................................... CCACCCCGCACGCCGCGAGGAGACGGCGGGAAGGCTC 41244 36 100.0 37 .................................... CTTGGTTTTGGGTTTGAGGGCCTTTCGCTTCTTGGTC 41317 36 100.0 36 .................................... GGCGACGATCGCCAACACGTCCGGCACATCGCTCAG 41389 36 100.0 38 .................................... CCAGCGTCATCCTGTCGACCCGGCCTGCGTAGGTACGG 41463 36 100.0 36 .................................... GACACCGGCCGGGTTCGCGTGCCCGGTATACCACAC 41535 36 100.0 37 .................................... CGCGCCCGAATATGCCGGACAATTAACGGAAAGAGGG 41608 36 100.0 54 .................................... GCTGACCGAATTGAAGCTCGGTTCCCGCAATTCGTGCGTTACACCGCAGAGGGA 41698 36 100.0 38 .................................... TTTTTCGCAGAGTAGCATCGTGTGATCGTCGCCGCCGG 41772 36 100.0 37 .................................... CCCAGTCGGGCAAAGGTTTCGGCGTTATCTCGGTTGG 41845 36 100.0 40 .................................... TTCGTCGCCCCCGTCAGCGCCTCCACACCGGGGATGCCGC 41921 36 100.0 37 .................................... GTATTAGAGAATTACATTCTCAAGGAACTCTATGACC 41994 36 100.0 37 .................................... AGGCCCAGAACACCGCTCTTCAGGCCAAGGTCGATTC 42067 36 100.0 37 .................................... GGACCATTTTCTGGACGCCCAGCAAATGGTAGAAATC 42140 36 100.0 39 .................................... CGTTGGTCGGGGGTGGGGCGGGGCATTCGGGGCTCACAG 42215 36 100.0 37 .................................... ACCGCCCGCCAGTAATTGACGAGGTAATGGTTAACAT 42288 36 100.0 37 .................................... CTCACCTTCCAGAATGAGAATCATTCGGTCAGGCTTC 42361 36 100.0 37 .................................... TGCAACGCCCCAAAGTCGTTCAGCGGGTTCACGACAT 42434 36 100.0 37 .................................... ACCGAGCGCCTTACCGCCGACCGTCGTGGCAAGCCGA 42507 36 100.0 36 .................................... CAGTACGCTTTGCCGGCGAACGCCGCCCCGAGCGTG 42579 36 100.0 38 .................................... ACCCAACTCTCCCCAGCCTCCACACCCCGTTCCCCCAA 42653 36 100.0 36 .................................... GCAACCAAGTGGCGAACCATCCCTGCCACTACGAAC 42725 36 100.0 36 .................................... TTCTTCCCTTTACCGCGGGCTTGGTTCGAGTACCCG 42797 36 100.0 37 .................................... CGTGTCGATAAGGTTTAGGCCGAAACTGGACCAGACC 42870 36 100.0 36 .................................... GGCTTCAATTGCTTTTTCACTAGGGCCGCTTGACTC 42942 36 100.0 39 .................................... TTGGCCAACAGGGGATAGTCTGTATTGGGGTAACGCTGA 43017 36 100.0 37 .................................... GGCAACGACGGGACATGGACTTACCTTGTCTTGCCGG 43090 36 100.0 37 .................................... CCCTCCGTCTTTCGCGGGCCGCGTGCCCCATAGTCAC 43163 36 100.0 37 .................................... GCCGCGATGAAGGCGAAGATGGCCGCGACCGAGGCGG 43236 36 100.0 40 .................................... CGGCCCGCGTCATCGATCCCCCGCGTGAGGAGCGGTAGGC 43312 36 100.0 40 .................................... GATTTGTTGGTCGCGCCCGGCGTCGACGGGACGAAAGCCC 43388 36 100.0 38 .................................... GGCGCCCGGCGGCGATCGCGGTCGGGCGAGGTCGACGT 43462 36 100.0 39 .................................... GTGGACATGCGGCCCGACGACCACGGTTGGGACGACTGG 43537 36 100.0 38 .................................... TGCCTCGACATGCAGGTGATGTTCCCGCGGGGGATCTC 43611 36 100.0 37 .................................... GCGATTCGTAAGGCAAGTCGTGGTAAGTGCTTAGGTC 43684 36 100.0 38 .................................... CGTTGCATTAGCTGCCGTCACCCATACAAACAAATCGG 43758 36 100.0 39 .................................... CTATCGCCTTGTACACTGCGGCTTCCGGGGAATACCCAG 43833 36 100.0 37 .................................... AGCCGCCATCCGACCGGCTTGCCGTTCACGTCAAGGC 43906 36 100.0 37 .................................... CGTTCGAGCAACCCGATCGGATTCGCCGCGGTGATAC 43979 36 100.0 38 .................................... ACCCGCCGTTCCACCTGGCCCCGCGGTCGGGGAACAAC 44053 36 100.0 38 .................................... CGTGATTTGGGGCTTGTATGGCTTGCGTGTTCTGATAG 44127 36 100.0 39 .................................... CCTTCACGAACCATTCACGGTAACGCAAATATTTGACGA 44202 36 100.0 38 .................................... TCGGCCATGACTACGGCGGCCCTCTGTTGCTGGTCGGC 44276 36 100.0 38 .................................... GCGTGACACAAGGTGTTTCCGGAGAACTTCCACGGATG 44350 36 100.0 36 .................................... ATCCCGAACCCCGTCGACCAGTCACTACTCGAACGT 44422 36 100.0 37 .................................... CCGTTCGTCACGTGGGCTCGTGATGGGGCTCTGACAC 44495 36 100.0 36 .................................... TCCTTTTCTACTAGAATTACGTCGCCATTTTTGCGA 44567 36 100.0 37 .................................... GGCCTTGATGCCGTGCATCGCAGCCTCAGCGAACGAC 44640 36 100.0 37 .................................... GTGCCATCGCGGTCTAATCGGAGAATGCAGCCATGAA 44713 36 100.0 36 .................................... AACCCCTATCTAGAGCTGACTTGCGACACGCTCCAC 44785 36 100.0 37 .................................... CGCGACGACACCATTTCCTGCTAAATACAACGTCGGC 44858 36 100.0 39 .................................... TGGGCGTTCATCGCGTTTGCACCCCCCGCCGCCTGGGCG 44933 36 100.0 37 .................................... GCCTGAAGAGCGGTGTTCTGGGCCTGAAGTTGTTCGA 45006 36 100.0 38 .................................... GGCGACCCGAACCCGGTGACGGGGTCGTATTCGGTTCT 45080 36 100.0 38 .................................... GCTGGCGTACCATCTTTCGTGGTAGCTGCCGAGGTCGC 45154 36 100.0 37 .................................... CACCTGGGCAACTGGCGGGACGCTGTGACCGGGCACG 45227 36 100.0 37 .................................... CCGAGAACGAGACCGGCAACGCGGTCGGGGCCGGCCA 45300 36 100.0 39 .................................... CGGCTTGCGCGACTTCTTGGGTTTGGATTCCACGGGGAC 45375 36 100.0 38 .................................... CGATGGTTGGGCCAGAACCAAGGAAGACGCCCACTCGG 45449 36 100.0 39 .................................... GATGTGCGGCGCGTGCTGGGCCGTCAATATGATCGCCAC 45524 36 100.0 38 .................................... CGCAGTCGCAATAATCGCCCTGCGTGCTCGTCTCGCCC 45598 36 100.0 38 .................................... TGTTCGCTCACCGGCACCGCGGCCGAATTCGACGTGTC 45672 36 100.0 38 .................................... ACCCTCGCGCCGGCCGGGTCGAACGGGTTTGCCGGGCC 45746 36 100.0 39 .................................... GGCGTCGTAGTACGCGATCGAGCAGCACCACCACGGCGG 45821 36 100.0 36 .................................... CTGGTCGACCCACGTCCCGTCGCCGGCCGGGGAGAC 45893 36 100.0 37 .................................... GACTTTAAATAGGCTTTCTCGATAGCAATCTGGTCAA 45966 36 100.0 36 .................................... CGTCTGCGGGACGTAGGCCGCTTGCGTGACGGACGA 46038 36 100.0 37 .................................... TCCTTCGTTCACTTAGACGCGGATACGTATCAGTCTA 46111 36 100.0 37 .................................... AAACGCATGGGGTAAGGTAGAGGATGCTTTTGGGACG 46184 36 100.0 37 .................................... GCAACATCTTGCGGGTCGTGAACATCGTCCGCGGGAT 46257 36 100.0 39 .................................... GTCACGGAGACGACCCTCGCCGGCAAGGGCTTCCTCCGC 46332 36 100.0 36 .................................... GGGACGCGGAAGCCGGCAGCGATGTAGGAGCGGGTG 46404 36 100.0 38 .................................... CCCGCGGCGCTTGGGAGCCGGGGCGGGCGGATTGGTGA 46478 36 100.0 39 .................................... GATACCGGCGGCCGGCCGGGACAGATCCCGTGGACCGAC 46553 36 100.0 39 .................................... CCCCTTGGGCGTTTGGGCGGCCGGCGGCAAGCCCACCAT 46628 36 100.0 38 .................................... GGCTGCAGGCTCCGGCTCGGGAATTCGCCCGTGGTTGC 46702 36 100.0 37 .................................... GACCCGCGGTTTCCCGTCCGCCCCGTCCCAGACCGCC 46775 36 100.0 37 .................................... GCGGCGTAAAGGGTGGTTCGGACACAGTCCGGGTGCG 46848 36 100.0 37 .................................... CGTCTCTTGATGCGCTACAAAGACCCCACCGGCATCA 46921 36 100.0 36 .................................... ATTGATCGACAGTTTTTAGACTTGCCGCCGCACCGC 46993 36 100.0 39 .................................... GCCGCGACGAACGCGCGGATGTGGGGGAGAAGGAAGGAG 47068 36 100.0 38 .................................... TGATCGGCGTGCGGCAACAGCCGGCCGTGGGAAGCGAA 47142 36 100.0 37 .................................... TGGTATCGGAGAACCTTCCTTGACCACCGCGCGAGTT 47215 36 100.0 38 .................................... TGCTTCTGGGACCGGCCCGGTAGGCCCGTGGTAGTGAC 47289 36 100.0 38 .................................... CACGGGCGATGCCGACGTGAAAAGCGGATTCAAGGCGG 47363 36 100.0 38 .................................... ATCTACCCCGGCCCCGACGACCGCTTCCCCGAGAGTAT 47437 36 100.0 39 .................................... TTCCACGGCCTGTCACGTGTCGGATTACTTGGCATGGGC 47512 36 100.0 36 .................................... CGCCGCATGATGCCCCAGATCGCGGCCAACATCGCG 47584 36 100.0 38 .................................... TACTCTCTCGGATCGGATTACTGAATCTCTGATTGTAG 47658 36 100.0 38 .................................... TCCCGCTCGATCCGCTTGGTCGCTTGGAATGCGATCAG 47732 36 100.0 38 .................................... GCCGCCCCCTGGATGGTATCGGGTATTCACGCCGACTA 47806 36 100.0 38 .................................... CGGACGATCGTACACCGCACTCGGAACCCCGACAGGGC 47880 36 100.0 37 .................................... TCGTTGTGCCGGCCGTTGAACTCCAGGTAGTGCTGGC 47953 36 100.0 37 .................................... CCCGTGTAGGCCGGGTCGTTCGTGGCCCCGTAGTACG 48026 36 100.0 39 .................................... CCTTGGAACTCGCCGACCGTAACCCTTCCCATACACCGG 48101 36 100.0 38 .................................... ACCGCGCGTCGCAGTAAACCCGAAACCATCCGCGGCGT 48175 36 100.0 37 .................................... GGACGCGGCCTGTTCCTCGGAATGATCCCGGAGCCAG 48248 36 100.0 36 .................................... GATCCGTCGCCTTTCGCGGGCGGCGGCGCGGCGAAC 48320 36 100.0 38 .................................... GTGTACCGGAGCCATTCGCGGATGTCCGCCCCGTACAC 48394 36 100.0 37 .................................... TCGCTCGCGGGGAACCGGGCGGGACCGAGCGGCGAGC 48467 36 100.0 38 .................................... CCCGACGATCGGGCGGTGGATCTTTATCTTGACACGTC 48541 36 100.0 39 .................................... CGCCGACTATCTGGAGGGATCGAAAATGGCCGCAGACGA 48616 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================================== ================== 142 36 100.0 38 ATCTCCACGGCTATGAAGCCGTGGCCGAATTGAAGC # Left flank : CCGGTGACGGCCGTGCGAAATGTTTACCTGATCAGTTACGACGTGGCCGACGACAAGCGCCGGGCAAAGGTGTTCAAGAAATTGAAGGGCCGTGGCGAGGCCGTGCAATTCTCAGTTTTCCGTTGCCACCTGTCGGTGACCGAGAAGCTCACGCTGCGCGGGGAGTTGTGGGACGTGTTGAATCCGAATGAAGACCGGCTGTTGTTGATCGACCTCGGCCCGGTCGGCGCGTCCGGCACCGACTGTTGGGAGACGTGGGGCTGTCCACTTGCAGATCCGGCTCACTTCGACGGCCCGCAGGTGATATAATGGCTCAAACTGGCCCCGCGAGCGGTCCGGTGCCAATGAAACCCCCGGACCCACTCGCGGCCGGAATGCTCTTTGACAACAGGGTTTATGAAGAGTGGTCTTTTCTTGTTGGGAGTTACTCGAATCGTCGGAGGACCCGCTCGAAATCCCCCGCGCAAACCCTGCAATTTGCAGGGTTTGGAAAGCGAGCG # Right flank : CACCCCCTTAAGTGGATCGCTGTGAAGCATTATGAAAAAGTTGGAGACACAAGGATCGACCTTCGAGGTGTCCTCGGTAAGGATTCGTACGGAGCAAGATTCGGCGATCAGGTTACAGTCGAAATTGAGCTCTCTCGGCCAGCATACGCATACCTGGTGGCATTCCGCCCAGATGGTATGGTCGAACCTCTGTTTCCTGAAGACAGCAACGAACCGCCGCCCCTGACCGACCGACCTCGCTACCCGTCAAAGTCTCGTGAGTTAAATTACGACCTAACGGACGGTACGGTGGTGTCCGTTCAGTATTGCACTCGGAGCCTGAGGTGGTGTAAATAGTTACGTCCGATGTCCGGATATTCGCCGTCCTGGGTGGGTGGGTCATGGATGACCTGAGTCGGTTCTGCTGCCTCAACGAGACGTGCCGGGATCACGGGAAGCGGGGCCACGGGAATCTGACCGTGCCCATGCGGTACGGGCCGAACCAGACCCGCCTGCTCCGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTCCACGGCTATGAAGCCGTGGCCGAATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.00,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 997147-997313 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIDE01000014.1 Fimbriiglobus ruber strain SP5 contig14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ============================================== ================== 997147 27 100.0 40 ........................... AAGAACCGGTGGTGTCGCTGCGCTCAACCACCGGCTAATC 997214 27 100.0 46 ........................... CAATCAATCGTGGTGAACTCGACGAACAGGGTCGCGTCCCGGATGA 997287 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ============================================== ================== 3 27 100.0 44 GCTGCAACGCCTCCGGCGTATAGACCT # Left flank : GTCATCGCGCCGGAATGGCGTTCGCGACTGCACGAGTATCTGGGAGGGATCATCTCGGGCCTCGGCGGCTTTTCGCAGGGCGTCGGCGGCGTGGCCGATCATGTCCACCTTCTGGTCGGCCTGAAAGCGACTCACTGTCTGGCGGACGTCCTGCGTGAGTTGAAAAAGGCTTCCTCGGCATGGGTGCATGAGCAGATCGGCTTGCGAACCTTTGCCTGGCAAGTAGGCTATGCGGCATTCACCGTAAGCGCCCCCACGCGGCCGGCAGTTCAGCAGTACATCGCGAATCAAGAGGAACATCATCGTACGCGATCGTCGCGAGACGAACTACTCGACATGTTGGCCAAGGCCGGAATTGAATACGATCATCGGTATTTCGAGTAATCGAACGGCGGAGGGCGTTGGCACTGCGACCCCGGCGTTGGCGCTGCGACCCCTCCGGGGTCGTTGGGTTGGTGCAGTGAACCGGTGGTGTCGCTGCGCTCAACCACCGGCTAATC # Right flank : TAAATCAATCGGGGTCGGCCCCAAGCCGTCCGAAGTCACCGTGGTCCGGGAGTAAACACAATGGCCGACAAGTCGCCCAAGAAGTCGGCGAAAGTCGCAAAGAAGGCCGACGCCAAGCGGGACACCGCGGAGCCGGTCCTCCTCGCGGGCGGCAACCCCCAGATCGCGAAGGCCGACGGCGACGCCCCCGTGCAGGCCTACATTGCGGCCATGCCGGGCTGGAAACAGGACGTCGGCCGCCGCCTCGACGCGCTCATCGTGCGCACCGTGCCCAACGTACACAAGGCCGTGAAGTGGAACACGCCCTTCTATGGCGTCGAGGGCCAGGGCTGGTTTCTCGGCTTCCATTGCATCACGAAGTACATCAAGGTGGCGTTCTTCCGCGGCACGTCGCTTCGCCCGGTCCCGCCCGGCGAGTCCAAGCAGAAGGAAGTGCGCTACCTCCACATCCACGAGGGCGAACAAATCAACGAGGAACTCGTGGCGAATTGGATCCGGCA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCAACGCCTCCGGCGTATAGACCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 109100-108566 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIDE01000020.1 Fimbriiglobus ruber strain SP5 contig20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 109099 36 100.0 39 .................................... ACCTGGGTGCCGGAGGCCGCGATGTTCAGGCGGGTCGCG 109024 36 100.0 35 .................................... GTCCAGGTCCTCGTGCTCCCGATGCAGGGGTTCGA 108953 36 100.0 34 .................................... ATCATATCGCGGGCCGCCCGGACCGCCACGAGAC 108883 36 100.0 32 .................................... TCGGCCTCCCGCGCCGCGACCAGATCGGCCAG 108815 36 100.0 35 .................................... GCCCCGAGCGAGGCCGCCAGCGCCTGGCGTCCGGA 108744 36 100.0 36 .................................... CTTGGCCGGCTCGTCACCTTGAATACGGCCCTCATC 108672 36 94.4 35 ........................A..........A GCGTTCGACTGGCCGACCTGCTTGATGAGGGCTTG 108601 36 88.9 0 ............................A.A...TA | ========== ====== ====== ====== ==================================== ======================================= ================== 8 36 97.9 35 GTGATGAACGCAGTGACGCCGAAAGGCGTTGAGCAC # Left flank : GGACAGTCAGCCTCCTGTTGTTCCTGATCGTTCATACCGGTCGGATGGAAGTGGCGGTTGAGGACACGAAAGATGCCGAACACTACATCCGTGCGTTGAAGGCGTTCCGCCGTCGGCACCAGGGGCTGAGGGGCGTATTCCTGATCCACGATGGCGATCCGACCCACACGGCCGGCGACACGCAAGAGTACTTGGCGGGATGCGGAACGTGGTGGCGACCTCGGCTGACACCCGCTCACGCCTCTTGGTTGAACCAAGCCGAGATGTTGGTCGGGGCGTTCGGTGGTCACTACCTGAAGCGAGGTTCCTGGGGCGATCGGGCCGCGTTCATCGACCATGTGCTGGCCTCCGGCCCGGAGTACAACCGGCGCTACGCCCACCCGTTCGAGTGGACTTGGACTAACGCGAAGATGCGGCTGTGGTTCGCTAAACATGCGCACTGAATTTGTTTCACGACTTCTGGCCAGGCCCACTAGGGCACAAGGGCCGATGCAGCATTC # Right flank : TCGGGGACGAACGTCCGACACCACTGGAAGGAGTAGGGTGGTGATCGCGTATCGTCGAACTGCTAATCACGGCGTGTCCCCACCGGCTCGCACTGCTTCCCACACTTTGTAGTTATCAGTTGTAACCTCTTCTCATACCAGAATTTAGGTTGTGTTATATTCGATAGGTTCCAAGGAGGAACGTCTTTACGTTGGTCGGCACAGAGTGGCACAGAGTCCAAATTTATTCTAATCCCAGTCGAAGAAATCTGCCGGCTGTTAACCGGCGGGTCGTAGGTTCGAATCCTACCGGGGGAGTTTTTATCATCTAACTGATCGGCCCCGCAATCGGCCTCAACTCACTGCAACGCATGGAGGTTGGGGCCGAAACTGTTTTCACCACAATCCCGCCTCCCACGCTCACCGGCCCCCATTTCGTATCCCCTGCTATCACCCGCAGGTACATCCCGGGGTACATCCGATCTCGGCCCGGTTGCGGCAGCCTCAATCGCCGGAGAATC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATGAACGCAGTGACGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 110617-110365 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIDE01000020.1 Fimbriiglobus ruber strain SP5 contig20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 110616 36 100.0 36 .................................... TGTCTCAAGGAAATTAACATTATCAGGTCTTACAGG 110544 36 97.2 36 ......T............................. GCGGTCGGCCCGCCGCCGCAGTTGTCGCTCGCGTTC 110472 36 100.0 36 .................................... ACTTCGCCTCCGTGTTGAAAGACTTCGTGCGCTACT 110400 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 4 36 99.3 36 GTGATGAACGCAGTGACGCCGAAAGGCGTTGAGCAC # Left flank : CTTCGTCCCGTTTTTCCCTCGATCCGTTGGGTTTTTGCCGATGTGGTCGCCGCCGTGACGGGCCTTCCCCATGCACCCGTCAGCGCTCTGCCAGTCCCAATGGACTTGCCCCAGATCATCACATGTCTGGACCAGATCCGCCCAGATCTTTTCCATCACACCCAAGCGACACCAGCGTTGATACCAACGGTGAACCGTGCTGTCGTCACCCAGCACCTTGGGCAACGCATTCCATTGGCACCCGGTCCGCATCTGGTAGATGATCCCGTTCAGGCACCTACGCCAATCCGCGTGATGCCGACCACGGGGTCTCGCCGAGGCCAGGCCGCCGCAAGGATCGGTTCGATCCTCGCCCATAAATCATCGGATACCTCCCAGATCGTCGGAAGGATCGATTCTCTGTCCGCCGTCATACACTCGCTCCGCGATTTCCCGTAACCTCCTGCCCTGGTACATTATACTTTCTGAGATGGTTTCTTAGCAGGTGTCCGTCATTGAAC # Right flank : TGCTTCTCTAGTGGGCCTGGCCAGAAGTCGTGAAACGAATTCGCGGAGAGGGTATGCTGGCCCTGCGCCCTTATCGGCTCCTGGGGTACTGCCATGCGTGGTCGTAAGCCCTCGCCCGTGATGCTCTCCCCTGTTGATCGCCCCATTCTGGAAGCCGTTGCCCAAAGCAGACGATTGGCTTGGTATCAAGTTCAACACGCGCGGATCATCTTGGCCCTCGCGGGTGGAGATCGGGTCCGGGATCTCGTCGCTCGGTTGGGGTGTAGTCGCTCCACCGTCTGGAGGGTGTGTCGCTGGTATGCGGACGGTGGACTGCCCTCACTCCTGTCGGACGACCCACGGGTAGGGCGGCCACAGGAGATTTCCCCCCTCCAACGTGCCCAAATCGTCAAGTTGGCCTGCTTGGAACCGGTCGCCAAGGGGTTGCACATCACCCACTGGACCAGTCGGGATCTGGCCCGCCAAGCGGTGACCGACGGGATCGTCGAAGCCATCAGCCC # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATGAACGCAGTGACGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA // Array 3 120430-111584 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIDE01000020.1 Fimbriiglobus ruber strain SP5 contig20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 120429 36 97.2 36 ................................G... ACGGACAGGTCGTTCATCTGCCGGTCTGTCGGAATG 120357 36 97.2 35 ................................G... AACACCCTCACCGGCGGCGCCGGCGGTTACACCAC 120286 36 97.2 35 ................................G... GCGTGGTCGCGGGCAGGAGCGACGGCGTTGGTCTT 120215 36 97.2 35 ................................G... CACCGACTCGCTTCCTCGCGAACGTAGGGTGCCCC 120144 36 97.2 34 ................................G... AGCTTGCCGTCGTCTTGCACGTTTCAACCTCCTT 120074 36 97.2 35 ................................G... TCGTGGATGGTGCATCGCCAGACAGCGGAAATGAT 120003 36 97.2 47 ................................G... ACGTAGGTTACCCGGTGCTGATCGTCGCCGTTGACCCGGCCAACATG 119920 36 97.2 35 ................................G... CAAGGTCGACACCGGGGGCGGGATTTTGCTCGAAA 119849 36 97.2 36 ................................G... AGGTGACATGCTGGCCTCTGGCGTCACTTCGCCACC 119777 36 97.2 35 ................................G... CTCCAGTGGATCATGTGCGGGAGCGCGACGGCGGT 119706 36 97.2 37 ................................G... ATGTACCGTGAACAGTCGCCGCAACTCCTCACCCAGT 119633 36 97.2 35 ................................G... ATGCCCGACCCGTTGCCGGGCGTGTTGATCGCGGG 119562 36 97.2 35 ................................G... ACCTACCCGGACAAAAAAACCGGGGCAAGTGCCCC 119491 36 97.2 38 ................................G... GGGCCGGTCGGCCGGGCCGCCGCGAACTTCATCGACGG 119417 36 97.2 36 ................................G... TTCAGCCGGCAGGATCGCGTTTCGCAGGAACTGAGT 119345 36 97.2 37 ................................G... CCACCGTTAGAACTGGCTTTCAGTTCGGTGATACGGT 119272 36 97.2 35 ................................G... GGGACACCGCCGACGCGGCTATTACCGCGAGTCAA 119201 36 97.2 35 ................................G... CTCGATCGCAAGGTCATGGTAGCGTACGCCCAGGG 119130 36 97.2 36 ................................G... TCCGCCTCCGGGCCAGTGGCCAACGGTTGGTGGAGG 119058 36 97.2 35 ................................G... ACACGTCGTTCGTTTGCGGCGGGACGTACGAGGAC 118987 36 97.2 35 ................................G... TTGTGAGTCGCGACACCGACATGCTCGCTGTTTTC 118916 36 97.2 34 ................................G... CCCCCGCCGCTATCCGTTCTGTTCGCGTTTGCCC 118846 36 97.2 38 ................................G... ACGTGGCGGAAACGCGCTGTACGCCATTGGAAGTCAGT 118772 36 97.2 35 ................................G... CCGATCTTCCCCCGCTTCCCCTTGCCGCCCAGCCG 118701 36 97.2 36 ................................G... TCTAGTACCCGGTCAGGCTGGCCCCCTCATCGCCCC 118629 36 97.2 34 ................................G... TTGGTCGAAGAACTGGCCGAACGCCGTCACGCGA 118559 36 100.0 35 .................................... GCATCCCAATCGATCAGGCCGGCGAGACGAGCGTT 118488 36 100.0 35 .................................... ACGAAGCTGGGCGATGGAAAGCCGAGATGATCACC 118417 36 97.2 36 ................................G... TCGTAGGACCACGTAATCAGGTAGTGCGTGTACTGG 118345 36 100.0 35 .................................... GTGACCGGGTGGGCGGTCAGCAGCGGTTTGATCCC 118274 36 100.0 35 .................................... AATAGCCTTGTCGCGTTAATGTTCCGTTGAGTGCG 118203 36 100.0 35 .................................... CACACACCAGGACACGCAGCACCTTCCTGGTACTG 118132 36 100.0 35 .................................... CGGCCCGGGAAGCGCAAGAGCTGGCCGGGTTACAG 118061 36 100.0 35 .................................... AAGCGTTTTGCTTTGGCACTGACGGCTGTCGCGTT 117990 36 97.2 35 ................................G... TCGCGGTCGAGGAGTTCAATGAGTAGTTTTTTCTC 117919 36 97.2 41 ................................G... TCGTGGGGGTCGCCGCCTCGGCCCCGCCAGCGGCCGACTAC 117842 36 97.2 35 ................................G... TGCCGGGACGCCGCGGCCAGGTCTTTCGCGTCGTC 117771 36 97.2 36 ................................G... CCTCGACGGTCTCGGCGTTCGGGTCGCGGGGCCGGG 117699 36 97.2 36 ................................G... CCGGACCTGGTTGGGCTGATGGCGGAGCTGATCGCG 117627 36 97.2 35 ................................G... TGCGCGATGAGTGAGCCCGAATACGTGGAGTTCGA 117556 36 97.2 36 ................................G... GGTGGCCGGGATATCTCGTGGACCGAGTACCAGAAG 117484 36 100.0 37 .................................... AGATGAACGGGCGAGGGTACGACTGGCCGGTAGTGAA 117411 36 100.0 35 .................................... ATATCTAAGGCACCGTCCGTGATTAATGCCGCTTT 117340 36 100.0 35 .................................... TGGTGGATTATCGACGGCTTTCGGATTACGCTAAC 117269 36 100.0 36 .................................... AACCCCCCCCCAAAAACCGACGAGCATCGACCGAAT 117197 36 100.0 35 .................................... ACGGTCTCGGCGCTCATAGGGTTTGCAGCGGCAAG 117126 36 100.0 35 .................................... ATCAAAATCCGGCAACTCTTGGCCGACTACGCAGC 117055 36 100.0 35 .................................... GGGACGGCCGCGCGGGTGCCGTTCCGCAAGGCATT 116984 36 100.0 35 .................................... CTCACGGGTACAGGTCCAGTCCACGACGCGGCCCG 116913 36 100.0 38 .................................... GCGTATACGTGGCAACAGGTTCCGGCAGGGATCAAGAG 116839 36 100.0 35 .................................... AAGCCTCCCACTTATCCCGTTCCGGACTGGTGAGA 116768 36 100.0 38 .................................... GCCGCTTTGAGAACTTCCAACGCGTCGTCATCGATCAG 116694 36 100.0 34 .................................... ACGACGATGGCGGGGAAGACGAAGAAGAGGAAGA 116624 36 100.0 34 .................................... CTTTACGAGCGGGAGAAGCCGGTCATCGTGCCGT 116554 36 100.0 36 .................................... CTTTGGCACAAATTCGGCTGCCCAGAAGGTGATGAC 116482 36 100.0 37 .................................... TGGGCGACGGCCCGTGCCGGTTGAACGGGATCACGAT 116409 36 100.0 37 .................................... GCTGGGTTTCACGTTTATGTCCAACTGCACGCCTAAC 116336 36 100.0 36 .................................... ACACATCCACCTTGTCGACTAAGCCAGTAGTATACG 116264 36 100.0 36 .................................... CTGATCTGGTGGCTCGAGCGCAAGTTCCCCGGCCGT 116192 36 100.0 36 .................................... AGCCACGGGCACGGCTGGAAGTGGACTGGTGTATCC 116120 36 100.0 36 .................................... CAAGTACCGCCTCGTCATATCCAGCTCGGTGTGACC 116048 36 100.0 37 .................................... ATTTGGTTCGTCAGAAGTCGAAGGAAGGCTACACCGT 115975 36 100.0 35 .................................... CTGCCGGCCGCTGGAGTCGGCGGGTTCGGTACGGG 115904 36 100.0 36 .................................... GCCGTGATCGTACCGACTGCCCCACCTGTCCCAATT 115832 36 100.0 37 .................................... GCTTTGGCATCGGGCGGGAATTGGGTTCCGACGGCGG 115759 36 100.0 35 .................................... TGGTTCCTCAACACGCTGATTCGGAAGCGAGTGAT 115688 36 100.0 35 .................................... ACGTCTGTGGTATGACCGAGCCCAGCGGCAACGTG 115617 36 100.0 34 .................................... TGGATCTCCAGACCGGCCAATTCGATCCGCCGGT 115547 36 100.0 34 .................................... GTTCTTTGCCCGGTCGCTGTCCCGCTAGTGGATT 115477 36 100.0 35 .................................... GCGTCCGAACCAACGGGGTACGTCAGGCTGGCGGT 115406 36 100.0 35 .................................... GCGGCAGCTCGGAAGCGAAAGCGGCGGTCGGTGGT 115335 36 100.0 35 .................................... AATAGCTGCTGCTCCGTCGCGTTCTGGCCCTCATG 115264 36 100.0 34 .................................... TCCGCAATGGGATCCGAGTTGCGGAATTCGTCCC 115194 36 100.0 34 .................................... ACGCTCGTGCTGCTGACTTGAAGGCAGCACAAGA 115124 36 100.0 36 .................................... TCGACCAGGACGCCCTGGACAAGGAATGGATCGGAC 115052 36 100.0 35 .................................... AGGTACAGGTCGAGGGGCATGACCGCCTCGATCCC 114981 36 100.0 35 .................................... GTGTTGAGGATGGTGCCCAGGTAGGCGTTGTCGGG 114910 36 100.0 37 .................................... ACCTGAGTTTCGGGGGGTGGGATTGGACCGAACCGGC 114837 36 100.0 35 .................................... TCCGTCAGCTTGCCGAGCAGCCGAAACGCCACACC 114766 36 100.0 36 .................................... TCGAGGCTCATTCGGACTCTCTCTCGGGTGGAAGGA 114694 36 100.0 35 .................................... ACGAGCCGCGGGACGACGGGCGGCCGTCGCTCTGG 114623 36 100.0 34 .................................... GCGAAGAACCTGTCCTTGCAAGGGGCTTTGGGGC 114553 36 100.0 35 .................................... TAGTCAGACCTCGTAAAGATGGTGGGTGAAAAAGA 114482 36 100.0 36 .................................... ATCCTGGCCGTGCTGGAAGAGGCGTTCGGGGTCGAG 114410 36 100.0 35 .................................... ATCTCGCTCGGGTTCGCCGCGTAGACCAACTGCTC 114339 36 97.2 36 ................................G... ACTGTTAAAATCAGCACGATGAACGCTATCGTTTGC 114267 36 100.0 36 .................................... CCCGCGAAGAAGGGTGCTGATAGCTTCGGCGACAAG 114195 36 100.0 35 .................................... CTGCGGATTATATTACGTCTAATGCCGAGGATATT 114124 36 100.0 35 .................................... TATGTGGGTCCGTTACAGCACAAGATTCCCAAGCG 114053 36 100.0 36 .................................... TCTGCTCCACTCTGGCCAATGTCTCCGCTCCACTCT 113981 36 100.0 35 .................................... TTCATCGGCGATGGTGATCCACGATTTAAGCGTGA 113910 36 100.0 36 .................................... GACGAAATGCCCCGCGAGTGCTTCAAGTTCAAACGC 113838 36 100.0 35 .................................... AACTTCTACAATGATCGAGCGTCCGTCTGGAGCGA 113767 36 100.0 36 .................................... TTCGAGAATTGGTGTGAAACTAGTTTGCTGTTGAAA 113695 36 100.0 35 .................................... TCCTGTTGGGCGACGAGCGGGTTGGACGTGGCACT 113624 36 100.0 34 .................................... AACGTGGGTCTGACACTCTCACAGCTGGAGCAAT 113554 36 100.0 35 .................................... ATAGTGAGCAAGGTGACGAACGACAAATGGACGGT 113483 36 97.2 35 ................................G... TCCCCGACCAGGGCGATGATGTCCGCCACCGCCGC 113412 36 97.2 34 ................................G... GCGTCGACCACCTCGCGGGGGACGGCCCCGGGGC 113342 36 100.0 35 .................................... TTCTGCAACACCGCCTGCCACGCGTCGGCCGCGAC 113271 36 100.0 37 .................................... GCCACCCGCGGAACTGGACGTGGCCGGGCTCGACGAC 113198 36 97.2 36 ................................G... TTTGCCCCGACCCGGCTGACGAACTGCTCCGGTGCC 113126 36 97.2 34 ................................G... GATGAGCGCGCGAAAGCCAGAGAGCTATTGGACC 113056 36 97.2 36 ................................G... ATCCAATCGGCCGATATCGTGTTGTTTCCATGGGTC 112984 36 97.2 36 ................................G... AGTTGGGGGAGTGATCTCGTGCAAATCACCACTAAA 112912 36 97.2 37 ................................G... GCGGTCACGGCCCACATTTCCTTGAGCCACTTTTCGC 112839 36 97.2 35 ................................G... ACCCCGAAGGGTCAGGATAAACTCACCCACGCGTC 112768 36 97.2 35 ................................G... TCGCGGTCGAGGAGTTCAATGAGTAGTTTTTTCTC 112697 36 97.2 41 ................................G... TCGTGGGGGTCGCCGCCTCGGCCCCGCCAGCGGCCGACTAC 112620 36 97.2 35 ................................G... TGCCGGGACGCCGCGGCCAGGTCTTTCGCGTCGTC 112549 36 97.2 35 ................................G... CCTCGACGGTCTCGGCGTTCGGGTCGCGGGGCCGG 112478 36 97.2 35 ................................G... GTCTGCGGGGCACCTTACGGCGGCGCCCCGTTCCC 112407 36 97.2 35 ................................G... TCGCAACCGGTCTTTTTGTGGATGCGACTTGCTCG 112336 36 97.2 35 ................................G... CCAACGGCGCCGCCGACCCCGACCGTCGGCCGGGC 112265 36 97.2 39 ................................G... AAGCAGCCGGAGAAGTCCGAGGAGATCGGCCGCTACTGC 112190 36 97.2 35 ................................G... CCGGGGTCCAGGTCGTCGACCACGACGTACGCTCC 112119 36 97.2 36 ................................G... CCGGACCTGGTTGGGCTGATGGCGGAGCTGATCGCG 112047 36 97.2 35 ................................G... TGCGCGATGAGTGAGCCCGAATACGTGGAGTTCGA 111976 36 97.2 36 ................................G... GGTGGCCGGGATATCTCGTGGACCGAGTACCAGAAG 111904 36 97.2 36 ................................G... CCTGTGTTTCAATCCCAGGCCCCGACCAGTGCGTAC 111832 36 97.2 34 ................................G... TCGACAAGATGGAAGTGTCCGACTGGACGGTCGT 111762 36 97.2 35 ................................G... ATGGTGCCGCCGTAGCCGGGATGGTGCTTCACGTC 111691 36 97.2 36 ................................G... CGGTTGCTTGGATGGGCTTCCATACGGCACCCCCGG 111619 36 97.2 0 ................................G... | ========== ====== ====== ====== ==================================== =============================================== ================== 124 36 98.6 36 GTGATGAACGCAGTGACGCCGAAAGGCGTTGATCAC # Left flank : ACCGGCTGCGAAAGTGCGCGAAGCACATGGAGGGGTATGGCCACCGGGTCCAGTATTCGGTGTTCCGGTGCTGGCTGACCGGTCGGGAAGTGGAACGGCTCCGCTGGGAGCTGACCGAACGGCTGGACCGCGATGACGACGTGATGCTCATCCCGTTGTGCGGGACGTGTGTGGACGGTATCGTGGGGATCCACGGGAGCGAACGCCCGCCGGAGTGGACGGACCGGCCGCCGCGGCACGAAATCGTCTAGCGGCGACCGAATCACGCACCGACGCGTGTCGACGGACAGAACGGGGCCAACCGGCCCTAACCCATGCCCCGAGGCCGGGCTACCGATCTTTGACAACGTATGTCGGTGCATGATCGACGAAATACCCTTATTTTTCAGGGAAACGGCCCCGAAGCCGGTTGCTGAATGGACTTCCCGAGGCTGTGGCATCGGGAACCTTGAAAGGAGGTGGGATAATTCGTTACAGGGCCAGAGTTTGTAACGTGTGCG # Right flank : TTCCCACGGGCTTAGAAACCATCTCAAAATAGGCGTCAACCTAACCCATTGAGGCGGAAGAGTCTACGATACCAGATCAAGGAACACGCTAACTGGACTAAGCCCAAATAATTCTTTCCGTTTTTTGCATAACGGACCAAGATGGCTCGGCAACGATTCAGCCAACTCAGGGTACGCTCAACCACCCAACGACGCGGCTTGCCATCCGGGTGCTTGGCCGTGACCGTTGTCTTCTCCTCGCCGATTCGGCGGATGTGAGGGGTGTATTGGGCCTCACTCGCCGCAGACTGGCCGGACGGATTATCGTACGCTTTATCCAAACACAGATGTTGCTCGTGTTCTTTGGGATCCGGCCGCTCGATGACGATCGCCTCGATCGTCGCCTTCAATAACTTCGCATCGTGTCGATTCGCCCCGTCAATGACCACCCCCAGTGGTCCACCCTGTTCGTCCACCACGATGCTCCGCTTCGTCCCGTTTTTCCCTCGATCCGTTGGGTT # Questionable array : NO Score: 2.93 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATGAACGCAGTGACGCCGAAAGGCGTTGATCAC # Alternate repeat : GTGATGAACGCAGTGACGCCGAAAGGCGTTGAGCAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 430895-426348 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIDE01000007.1 Fimbriiglobus ruber strain SP5 contig07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ================================================== ================== 430894 38 100.0 37 ...................................... GAGTAACTCGCATCCTTCATGCGGGCACTCCGCATAA 430819 38 100.0 37 ...................................... GATGGAGATACTGGTAGTCACCATGGTACTGGTTCTC 430744 38 100.0 50 ...................................... GTCGGCGTTCTGGTGGTTCTGTCCCCCGCGCAAGTGGAGGCGCAGCCCCC 430656 38 100.0 37 ...................................... GAGGAACGCATTCTGTGCTCCCCGTTCGGCCTGGGAC 430581 38 100.0 38 ...................................... CGGAACATCGGCACCATTTGCGGCTCGGGGCCTTCCGG 430505 38 100.0 38 ...................................... CAAGAGAACAAGGAACTATGCATCTTATCGAACGTCGC 430429 38 100.0 38 ...................................... AAGGAACTAGGCTTCAACTGGTCGTATCCAGTTTTTGC 430353 38 100.0 40 ...................................... GTTGCGGCCAACAATAAAAAACTAACTGCTGCCTTACCAA 430275 38 100.0 36 ...................................... GAATATACATCAAGAACGCGTCCGAAATGCGCTCTT 430201 38 100.0 39 ...................................... TTGACAGTTGCCGCAAACTCCGCCATGCCAATAAATCAA 430124 38 100.0 40 ...................................... GCTTTATCCGGTGAAGGTCTTTCCAAACCTTCCTCCGATC 430046 38 100.0 39 ...................................... CAGAGACTCCAGTAAGGGTAAATGGGCGAAACGTACCAA 429969 38 100.0 37 ...................................... GTTTCGTCCACCAAGTCTTCACCACCGGCGAAACCGA 429894 38 100.0 42 ...................................... GTTTAGCAAGTGACACTTAAGTCACCGCCAAGGAGTTGTTAC 429814 38 100.0 39 ...................................... GGTGACGTTGCGCATGGAACAGATTCCTGTGTGAAACGG 429737 38 100.0 38 ...................................... TTGGTGCCGGACTCGATGACGGCGGTGATCAACTTAGC 429661 38 100.0 35 ...................................... TTGTAGTTGCCAAAATCGATCGAGTGGAAAACCAA 429588 38 100.0 40 ...................................... TGTGTTTTGGCGACACATCATTTGGGAGAAAAAGCATGAC 429510 38 100.0 44 ...................................... CAGCAAACCGCTGCTTGTCGAACCACCCTTTGAAGGCGGTCCAC 429428 38 100.0 37 ...................................... GTACCTCCGCTTGCAAAAAACGCTGCCGCTGGAGGCG 429353 38 100.0 36 ...................................... CTTCCATTTCATACTGTGCGAAGTACGGGGATTCCA 429279 38 100.0 38 ...................................... AGACGCTGACGGCGACGATTAAGGACGTCGGGAAGAGT 429203 38 100.0 37 ...................................... TCACTCCGAGCCACCACAGCAGGAAAATTCCCGCCTC 429128 38 100.0 40 ...................................... GAGGAATCACCGGCTCGGCCGATCCGCCGCCGGCCACGAG 429050 38 100.0 36 ...................................... TCGTCACCTTGTTGTCGTTGTAGTCCGTGAAAATGC 428976 38 100.0 41 ...................................... AAGGAATTAGGTAATCCAAAGACACTAGAGAATGAGTTTCA 428897 38 100.0 39 ...................................... ACAAGCGCCGCATCTCTGCCCAGTCCTCCTGCGCCTGGG 428820 38 100.0 46 ...................................... GGAGAGAGGACACAATCTTGGGGGCTCTCCTAGCGAGCCCTGCACC 428736 38 100.0 37 ...................................... GGTAGTAGACGTTTATAAGGGTCATCGCGACGATCAT 428661 38 100.0 38 ...................................... GTTCACCCTGGGCAGTTCCGAAAAGCACCTTTCATTGT 428585 38 100.0 36 ...................................... GTTCGACGAGGGTAATTCCGTCTGGAACCTCTCGCC 428511 38 100.0 35 ...................................... ATGATTTAAAGAACGGGGACAGAAGATGTCGGTAC 428438 38 100.0 39 ...................................... CTTTCTCTCGAGTGGAGAGTAAGCCGCAGACCCATTGGG 428361 38 100.0 37 ...................................... TTTCAGTTCTTCCTCCTCTCTCCTACGCCTCCTATAG 428286 38 100.0 36 ...................................... TCGACGGCATTGCGGGACGGCGCAAACAAGCGCCGC 428212 38 100.0 39 ...................................... GATTATGCCTACGACAACAAGTGCAACCATCCCCATCGG 428135 38 100.0 35 ...................................... GCGACGGCAAGCCGTTCAACGCCGGGACGTCGCGT 428062 38 100.0 37 ...................................... CCGCTGGTCGGGCTGGAGGCGGCTATGCCCCCAGACG 427987 38 100.0 42 ...................................... ATCCGTGTCGCCGGGCGATGTCGTCCGGGGTCGGGCCGTCGT 427907 38 100.0 46 ...................................... CGGTTCTCTCCGAGAATCGGGGGCCTTTATGCTGGCGCCAGCATAA 427823 38 100.0 40 ...................................... CAGGGTTTCCCCCTCCGCCTTGCCCGCCGGCCAGTGCTTA 427745 38 100.0 39 ...................................... GACGCTTTGCGAGACGTCAAGGTTGATCCCGAATAACGT 427668 38 100.0 37 ...................................... AAGATCGTACCTTCCGTCAGAACGGTCACCTTTTTGA 427593 38 100.0 40 ...................................... ACTGTGATTCGCGGATGTCGTTACCCACGAACCGGCGGCC 427515 38 100.0 36 ...................................... CTATGCAGACGTACGCAATCTGAGCTTCAGGATTTT 427441 38 100.0 39 ...................................... TTTACGCCAGCTCGCAAAAGATCATGTGTCAGATCCAAC 427364 38 100.0 37 ...................................... CCAGGTCATTGCGACTGATCGCGTACTCGTTAATTAC 427289 38 100.0 38 ...................................... GAAAAACGCGGCGGGTGAGTAACGGATTACCCACCTCC 427213 38 100.0 37 ...................................... CTGGGGTTTCGCGCGGCTGCGAGCCGCGCGATGTAGG 427138 38 100.0 39 ...................................... AAACGCTCCCCAGCATCGTCTTCATCGATGCCGAAGAAC 427061 38 100.0 39 ...................................... GGAATGGCCTCCGTCGCTTCACCTGCCAGCGAGAGAAGC 426984 38 100.0 35 ...................................... TAGCGTATGGCGCTGTGTTGGAACACAGCGGCGAA 426911 38 97.4 37 .T.................................... CTTCGGCGAGTGGCAAAATATTACTCCAGCCATACCT 426836 38 100.0 36 ...................................... GATAAACGGGTCTCTGCTCTCCCAACGGGAGAGGAC 426762 38 100.0 38 ...................................... CCACACCCGGTCGAACCGCAGCTGTCGGCGGGGGCGGC 426686 38 100.0 36 ...................................... TCATCGGATCTGACGGCGACGCTCTCTCGACAAAGT 426612 38 100.0 39 ...................................... GACGCTTTGCGAGACGTCAAGGTTGATCCCGAATAACGT 426535 38 100.0 36 ...................................... TCGTCTCCGGCAATGGGTAAAACGACACCCGGGCCC 426461 38 100.0 38 ...................................... GTGCTAAAGAGGATCTTCGCACTCTTGACCGAACCTTC 426385 38 68.4 0 ...A................CG...C.A...CCAGCGT | ========== ====== ====== ====== ====================================== ================================================== ================== 60 38 99.4 38 GGCGCCGATGTGGTTGGCCGTACAGTGGCCATTGAAAC # Left flank : TCTCTCTCGTGCGACCTGATCGAGCCGCTGCGCGTGCCGGCCGTGGACCGCTGGGTGGTGGGAGCGTGTGGCCAGGACGAGATCGCGCCGGACCAGTTCGTGGTGGAGGAATCGGGCGGCTTTCGTCTGCAACCGAAAGCCTTCGGCACGGCGGTTTATTTGTGGGAAAAATCCTGGCAGGAAGCCGGAGCCGACGATACTCTTCGGGAGTGGATTGCGGCTCTCGCTACGTTTTTGCGTGAGCGGTCAGACCCGACAGACGAGTCTGAGAGTCCCGATCTTTGACAATTTGGGTAATCTGGGTATTTGCCGCCCCCCTCCGGAACCCTCAAAAACGGGGGGGGGTTCGGCAAACTCGCAATCTTTCCACTCATCACGACTTACGTCAAATTTCGAGGTCCGTTTATGAAGTCTGACATTGGCGCAAATAACAAGATGACGGGGGGTTCGGCAAAACCCCTTGTTAAGTGCTTATTTAGCCGCTACTTATGAAGGGGGGA # Right flank : CAGAAACGAAAGCGGGGCGGGGTACTCGGTTTCTTCCGAGCGCCCCGCCCCGCTTGCCGTTGGTAAGGACTGCCCGGCAGATGCCGTCCCGAGTCAGGAGGTTCACGAATTGTCGGGAGCGTTCTTCGACCTCGCTTCTCGGGAACGGATCTTTCGGTCGATCGCGAGCCGCAACCGCGCAAAAACTGGTCTCGGCCCGCGCGCATATCGATGCACGACGATCAAATGCGGTCCACGGAACCACCCCTTTCAACACGGAGCGATTTTCGGAATAGTATATCATGGCGTGGTTTGCGGAAAACTCCGGGAAGGATCTCCCATGCTCCTGAATGCCGTCCTGTCGCGATTCCTGACCGCCACCCCGTTGGCCGTCGCCGCCCGCGGAGCCCTCGAATACGCGCTCGCGACGGACGCCGTCGACGCTCTGTTCGACCAGACCGTCGGGCCGCGGGCCGGGCGAACCCTCCTGTTCTCCACGTGCGTCGACTTGATGTCGACCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCGCCGATGTGGTTGGCCGTACAGTGGCCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.90,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA // Array 1 660751-659494 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIDE01000004.1 Fimbriiglobus ruber strain SP5 contig04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ========================================== ================== 660750 38 100.0 36 ...................................... ACACGCCGCAAGACGAGTGGTTCCCCGGCTACTGCG 660676 38 100.0 38 ...................................... GTGATTTCTTTGCCAAACATGCAGTGGTTTCCCCACGC 660600 38 100.0 39 ...................................... TTGCTCTCCCTGCTCCCTTTGGACACAGAGAATCGCCCC 660523 38 100.0 37 ...................................... GTAAAGTTGTTGGCGAAATGGTAATACGTCGAACACG 660448 38 100.0 36 ...................................... AATGATCCAGCTCCAACCGCTCCCGCTATTGCAGGA 660374 38 100.0 37 ...................................... CTTTCGCGGCGGCTCGTGCGCGTCCCCGTACGCGGTC 660299 38 97.4 38 T..................................... GTTGCGTGGTACGTCGGCCCGTCGTCGTCAAACGCGCC 660223 38 100.0 39 ...................................... GAGCAAAAGGTCGTTCGGCACTTCACCCGCCTGAAACTC 660146 38 100.0 36 ...................................... CCGGCAATCCCGAACGTTTCCATCCCGTCATCGGCA 660072 38 97.4 42 ...............T...................... TTCTATGTTGAGGGGTTCGAGTACAACGGGAAGAAGTATCAG 659992 38 100.0 40 ...................................... ATGTCGTCACCGAAGACGATGACCATGACGAACACCACAC 659914 38 97.4 36 A..................................... GACCAGCTTGCGACCCATTTGCGTGAACCTCAACGA 659840 38 100.0 42 ...................................... CGGAGGTTCAGTAAGAATGTGACGCCTGCGCCAACAAGTACA 659760 38 100.0 37 ...................................... TCTCCACGGCAACCTGAATCGGCCCGTACTCACTTTT 659685 38 100.0 42 ...................................... GTGCAATTCCCGACCGGGCTTACAACGCGGAGCAGTTGCCAT 659605 38 100.0 36 ...................................... TTCATTGAGTCGGCGGTATTGCCGGTGAAGTTCGAC 659531 38 81.6 0 ..T.T......AC..A.............T.......T | ========== ====== ====== ====== ====================================== ========================================== ================== 17 38 98.5 38 GGCGCCGATGTGGTTGGCCGTACAGTGGCCATTGAAAC # Left flank : ACTGGGCGTGCCGGGGTTGCTCGGCGATGGCCGCCGGTTCGACGTGGTTGTAGGTGTACTGGACGACGTGCCGGCCGAGCCCGCGGAGAGCGTTCTGAACGTCGTGCTCGAATTGCTGGGTCCGTGCCGGGGTGATGGGCTCCGACCGGAAGGCGTCGACGAGCGCCTGGAGTTGGTCCCGGGACGCGGTACACAGATCGTCGAGGGAGCGGTCCCGAGGGCTGGGCGTGTCCGATTCGCAGGGGGCCGTACACGTGGCCATGACGAGGGTCAGGGGGATAGAAAGGGTCATGCGGCGTTCCTTCGCTCGATGAGTCGTAGTAAACCCAAAGAGAGTCGGAACGCCGCACTTTTTCAAGCACAAACGGCGAATGGCATGGAGGGCGAAAAGGGACTCGCAGCGTGTTTCCCGGCCCGAACGCCAAAAACCCCGGCATTTCACAGCATCAGAGAGACTTCACCCTTTGCTCCTCCAAAGGTTTTGCCCTTCATCCTCCAGC # Right flank : GACATTAAACGCGTCGTCGGACGCGTCACTGGGGGCGATCGCCGCCAGGAACTCGTCCGACAATATCACTGCTCCAGAAGCCGTGGATCACGGTTTCGGTTCAGACTGGCAAGTGTTCCCGGATGACCCTCACCCCCGCACCCGATCCGCAAACAACTTCAGCCCCGTCTGGTACGCCGGCACCCACTCCGGCCGCGGGACGACGGGAGCCCGGAACTTCACGATCGCGGCGACCGCGTCGGCTACCGTGTATCGTTCGCGGATGCCGCGTTCGCCCCGGAGGTGCGTTTCCAGACCCGCCAGGGCCGCGGCCGCAGCCCCGAGCGCCGGGCCTTCGGACGACACCAGTCGTTCGAGCGGCCGGTTCAGCACACTCGCCAGGATCTCGCCCATCAATTCACTCTTCGCGATCCCGCCCGAAATGGTGACGCGGGTAATCTTCTGGCCAGCCGCCTCGTGTTCCTTTACTGCCAGCGCGATCAGGTACGCCAGCGCCTCGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCGCCGATGTGGTTGGCCGTACAGTGGCCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.90,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA // Array 2 663868-662516 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIDE01000004.1 Fimbriiglobus ruber strain SP5 contig04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================================== ================== 663867 37 94.7 39 ................-.......T............. GAAAACCATGTTCCGCTTTCCCCATAGCTTATACCCCGA 663791 38 100.0 39 ...................................... GCAAAAAAACATGTCAAAGACCCGGAGAATAACGACGAC 663714 38 97.4 36 ............A......................... TCGGAGACCTTCACGTCGGTGACCGCAACGCGTAAG 663640 38 100.0 37 ...................................... AAAAAGAGCCCCTCCCCGTTTAGGCCGACGTGAAAAA 663565 38 100.0 37 ...................................... GGTTTCTCCTCCTTTCCCCCACATTTAAGCGGGGCGG 663490 38 100.0 36 ...................................... CAACAGCACCTGTTGCACAGACCACATGGCTTTAAG 663416 38 100.0 40 ...................................... CAACTGGGTTCGTCACTTCCCAGTCGCGTTAAGGTCACGC 663338 38 100.0 37 ...................................... GGGGAGCCACAGATTTAGACTGCCTACCGGGCCGAAC 663263 38 100.0 56 ...................................... TCGACCGGTCGGTTGCGACCTTGCTGTTAAGCGCTTGGGCGCGGGCCCAAGCCTCG 663169 38 100.0 51 ...................................... TTAGGCCCGCAGGCGGGCCTTGTAGGAGCATTGGCGCCATTTCCGGCGCGG 663080 38 100.0 38 ...................................... CATGCTGTTGCTGCCGCTTCACGCGCACTGAAGATATC 663004 38 100.0 36 ...................................... GAATGAGAGCAAGTTGTTCGTCATCGAAGGCATCGT 662930 38 100.0 39 ...................................... GAATGTCTTCCGGTAGTTGCCAGCAGAAGTGTCCGGGAG 662853 38 100.0 38 ...................................... TTGCATTCCAGGAGTTGGTGCTCCTGACCGGGACGAAG 662777 38 100.0 36 ...................................... GGAATCACGAAGGCAGTGGTGCCATCGAAGCACCGA 662703 38 100.0 37 ...................................... TGGGGCTTCAACCCTTGAGAACCATCCGGAAACCGAG 662628 38 97.4 37 C..................................... TCACAAGGCCCGGTCGCGCCGTGTTGCGCCGGGCCAT 662553 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ======================================================== ================== 18 38 99.4 39 GGCGCCGATGTGGTTGGCCGTACAGTGGCCATTGAAAC # Left flank : CATCGTCTGGGTGGCCGACCGCAAGCACACCCTGATGGTCGCCCGCAACGACGCGACCGGGGAGATCAAGTACTTCCTGACGAACGCCACGGCCGAGCCGGTGGCTCGGATTCTCGCCGTCGCCTTCCGCCGGTGGACGGTCGAGCATCTATTCCGGGTCGCCAAACAGGAAGTCGGACTGATGCACTACGAGGGGCGGGATTACACGGGGCTGATGCGGCACCTGACCCTGGCCGTGGTCGTCCTCGGATTCGTCGCCGCCCACACGGAGCGGCTCCGGGGGGAAAAACCCAGACGTGACGATGGAGCAGGTGTGCCGGGCGCTCAACGTCCGGTGCGCGATCCTGTTCCGGCGGCGACGGGGAACCGGGGCCACCCAACATACCAGCGACGTAATTCAATACCACCAGCGGCGAAACAAGCAAGCCACCCGATCTCATAAGAAGCAGCGGCACAAACGTGTTACGTAAAATACGCGCTGTACTGTTAACTTCTCCTTG # Right flank : TTTGCTCCGGTTGAAGTCTCTCTAACTCGCTGATTATGCGGCGATTCCCAGCTCGTTTGGCTCCGAAGCGACGTGACCCCTCATGATGGGCTGCGGCCGTGCGGCCAAGACCCGCCCATACACGACGTCCCAGACCCCGCTCAGGAGGATCACCCGCAGGTTCAAGATCACTTGCGCCCCCTCTTTCGTCCACCGCATGCCGCTGAGCTTCAACCGCTGAGTGAACACCGTCTTGCACGCCGCCTCGGTTACTCCACTGCCCAACGGAACACCCACCCGTCGGTATCTCGCGTAGTCCATGTGACCCATCCGGTTTCGCAGGTACGCGTACGCCCGGTCGTACTCCTTCTTCTGGGTCCGGGTCAGCGTCCGGGCCACCCGGAACGCCGCGGCCGAGTGCAGCACCCGGTTCACCCCGCCCGGTTGGAGCATCCACTTCAGCATCTTCTTCGCCCACCCCACGGCCCCCCGGTCGCCACCGAACAACACGTTCGCCAACG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCGCCGATGTGGTTGGCCGTACAGTGGCCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.90,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : NA // Array 3 665791-665279 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIDE01000004.1 Fimbriiglobus ruber strain SP5 contig04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================================== ================== 665790 37 97.4 53 ................................-..... CCTCCCTCCGGAGGTTCGCGACCTCCCGCTCGAGGGCGGCGAGTCGCCGCCAG 665700 38 97.4 41 ...............A...................... AATGAATCCCCGCCAAGCCCCCTCACCGAGAAGGGCGTTCC 665621 38 97.4 37 A..................................... GCATCTGGCCGGGGATGGGATCGCTACCCGTAAGCAG 665546 38 100.0 39 ...................................... TCGCCAGTCCGAACAGAACCGACAGGGTCTTGCGAGACG 665469 38 100.0 37 ...................................... TGTACGGGTATGCGATACCCGGGAACCCGCCGTTAGC 665394 38 100.0 40 ...................................... CATAAATCTCTGTCAAGAGAGGATCCCCCAAAGGGTTCCA 665316 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ===================================================== ================== 7 38 98.9 41 GGCGCCGATGTGGTTGGCCGTACAGTGGCCATTGAAAC # Left flank : TGGCCATTGAAACAGGAATGATTACGGGGTTCTCACCCAGATCCTCACAGGCGCCGATGTGGTTGGCCGTACAGTGGCCATTGAAACGGGTAATGGAGCGTTTCTTCCTGTCCTACGTGCATTTCGGCGCCGATGTGGTTGGCCGTACAGTGGCCATTGAAACGCGAACCTCCTCGCCGAGAACCGTCACCTTGTGGCGGCGCCGATGTGGTTGGCCGTACAGTGGCCATTGAAACGTGGGGTCACAAGGCTACCGCTGTCACTATTGACAAAGCCCAGGACCGCCTAACCGGCGGAAATCTCAGCAGAATCCAGAAGGGATGGGTGATCGGAACGGGCCGAAGCCCCATCCGACAGATCGAAACCGTATGCCAATCCAGTCGCCACACTCTCGACGCATCCGCTTGTATTATCAGCAATTGCGGCAAGGATCACGAACAATCCATTTGTCAATAGTGACAGCGGTAGGTCACAAGGCCCGGTCGCGCCGTGTTGCGCCG # Right flank : TCAGGCATCCTCAAAAGGTTACCCTTAACAGTACAGCGCAGTAATTTAATAGGATGGGAGGGAAGGATTTAGGAGGAATCACATGACCGAGCAGGAAATCGTGGGCGTCGGCCCGGCGTTCGCCCGGTATCTGGGCCGGTATCGGGACGTGTTCCGGCAGGACCGCACGGCCGCCCACTTCGACACGTATTGTCGGGGCCTGTTATCCGACCTGCCGCGGAAATCGATCGAACCGATCGCGTTGGCGAGCGGGACGACGGTCCGTACCCTCCAGTTGTTCGTGACGACCTCGGTGTGGTCGTACGACGAGGCCCGGACGCGGTTGCACCGATTCGTGGCCGATACGCTGGCCGATCTCCCGACCGATCCCGTCGGAACGGTCGGGGTGATCGACGAGACGAGCAGCCGGAAGTGGGGGGATCACACTCCGGGCGTCCAACGGCAGTACCTGGGGTGTGTGGGCAAGGTCGACAATGGGATCGTGACCGTCCACGTGGGGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCGCCGATGTGGTTGGCCGTACAGTGGCCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.90,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : NA // Array 4 666751-666055 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIDE01000004.1 Fimbriiglobus ruber strain SP5 contig04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================================================================== ================== 666750 38 100.0 37 ...................................... CCGGCAACGCGCCGAGTTTGACCTCCGCCGCCACCCC 666675 38 97.4 36 .................T.................... TGTCAAACTATTGTCGGGGTTGACCCCCCGCAATAG 666601 38 100.0 50 ...................................... CCGAGTCGTCCCATTTCTTGAGCTCCCCGGTCCGACCCGACGGGTCGAAA 666513 38 100.0 36 ...................................... CAGAAGATGAAGGCCGGCACGTCCTGCTGGACCAGG 666439 38 100.0 86 ...................................... GCGCATCCTGCGCCATAGATAATCGCCGAGCGGAGGACATAAATGTCCGCCCCCGCAGACCTGGCATCGACGCGCCAGATCTCCTC 666315 38 100.0 36 ...................................... AGGAATGATTACGGGGTTCTCACCCAGATCCTCACA 666241 38 100.0 38 ...................................... GGGTAATGGAGCGTTTCTTCCTGTCCTACGTGCATTTC 666165 38 100.0 35 ...................................... GCGAACCTCCTCGCCGAGAACCGTCACCTTGTGGC 666092 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ====================================================================================== ================== 9 38 99.7 44 GGCGCCGATGTGGTTGGCCGTACAGTGGCCATTGAAAC # Left flank : CCGGCCCTGGATTTTCTTGCCCGCGTCATACCCGTTCCCGCCCGCGTGTTCGGTCCCCTTGACCGACTGGCTGTCGATGCTCGCGGCGCTCGGGGTCCGCTCGTGGCTCGGGGCGTGGACTTCCCGATACCCCTCCCGGAGGACATCCAGGAGTTCTTGCCAGGTACCGTCGTCCCGCCACTGGGAGAAGTACTCGTACACCGTACTCTTGGCCGGGAAGTCGTGCGGGAGCATCGACCACTGACACCCCGATCGGTTCACGTACAGGATCGCGTTCATCACCTCCCGGAGGTCCACCGACCGGGGCCGCCCCCCCGGCCGGGCGGCGGGCAAGACGACTTGAATGATCTCCCATTGGAGGTCGGTCAAATCCGTCGGGTACGGTTTGCGAACGGTCGCGTCCATGACCTCGCTCCTGGAGTACGAAGGAGCAACTAACTTAAAATAGCCGCACTACTTACGGCAAGGTCACTTTTCGGACAGCCTCTTAGTGAACTCGA # Right flank : GTGGGGTCACAAGGCTACCGCTGTCACTATTGACAAAGCCCAGGACCGCCTAACCGGCGGAAATCTCAGCAGAATCCAGAAGGGATGGGTGATCGGAACGGGCCGAAGCCCCATCCGACAGATCGAAACCGTATGCCAATCCAGTCGCCACACTCTCGACGCATCCGCTTGTATTATCAGCAATTGCGGCAAGGATCACGAACAATCCATTTGTCAATAGTGACAGCGGTAGGTCACAAGGCCCGGTCGCGCCGTGTTGCGCCGGGCGCCGATGTGGTTGGCCGTACAGTGGCCATGAAACCCTCCCTCCGGAGGTTCGCGACCTCCCGCTCGAGGGCGGCGAGTCGCCGCCAGGGCGCCGATGTGGTTAGCCGTACAGTGGCCATTGAAACAATGAATCCCCGCCAAGCCCCCTCACCGAGAAGGGCGTTCCAGCGCCGATGTGGTTGGCCGTACAGTGGCCATTGAAACGCATCTGGCCGGGGATGGGATCGCTACCC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.56, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCGCCGATGTGGTTGGCCGTACAGTGGCCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.90,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : NA // Array 5 669301-667745 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIDE01000004.1 Fimbriiglobus ruber strain SP5 contig04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ============================================== ================== 669300 38 100.0 36 ...................................... GTTTTCGATTTTGAGCACAAATGGCCTCAACTCTTC 669226 38 100.0 37 ...................................... GAGAACACCTCCCCCGGATCATTCTCCCCCATGAAGA 669151 38 100.0 38 ...................................... TTTCAACGGAGAAATCGGATTACTCGTCCGCTTCTCCG 669075 38 100.0 38 ...................................... GCGATTGCGCCCTGACCTGGCCCAAGAACTTGTATCGG 668999 38 100.0 36 ...................................... ATGCAGAAGGAGATTGGGATGCCGAACAACCAACGT 668925 38 100.0 36 ...................................... AATGGACCTTCATCCGGCTGTTGCTGCTGACCCGTC 668851 38 100.0 38 ...................................... AAGGGGGGCAAGTTAGCCCGCGCCCCCTGTCCAACCGC 668775 38 100.0 38 ...................................... TTGGTGGATAGGATTAATTCATCCATCAGGTCCCGTAT 668699 38 100.0 37 ...................................... AAGAACCTCACGGTTCATGTTGCGTGGGAGGCCGTGT 668624 38 100.0 38 ...................................... ATGGTTTCGATGATCCCTCCATGGACGGATACCATCCG 668548 38 100.0 46 ...................................... GATGTGACGGACGTTGTCTTTCACCGTGGGCGCGGGCTGGGCCTGC 668464 38 97.4 37 .........A............................ CTTGCAGTAGTAGACGAAGCTGAGCAGCTGGCTCGCC 668389 38 100.0 39 ...................................... CTTGACCGTGGCCTCATTGAGCCTCAGCGGAACCCCGTT 668312 38 100.0 39 ...................................... CTTTTTCGAGCGAGTCGTTGGTGCCGAGCATGACAACAG 668235 38 100.0 38 ...................................... TTCGTACCGCTGTTCGTGTTGCTCATGACATTTCCCCA 668159 38 100.0 41 ...................................... GAACGCCTGTTGTCAAGAGATCTCTCCAAAAGAAGGCTCAC 668080 38 100.0 37 ...................................... TCATGACTCTTCCTCGTACGTGTGAAAAGGAACTAGG 668005 38 100.0 35 ...................................... CTTCAGCTCAAGTCCTTTTGTCTAAGACCCGTAAC 667932 38 100.0 38 ...................................... CCGAGCCCAAGGAGGCCCACTGCACCTGCGCCGATCAG 667856 38 100.0 36 ...................................... AAGTCGCGCTGGATCTGCGCGTTGACATCCAGGAGC 667782 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ============================================== ================== 21 38 99.9 38 GGCGCCGATGTGGTTGGCCGTACAGTGGCCATTGAAAC # Left flank : TTCCGATCGACCGAATGAGACGGTCCCGAGAATCGAGGCCGGCGGCGTAGAGCGTTCGGTGGCGGGCGCGTGTGGGCGGCGAGATCTCGCCGGACCAGTTCGGGTGGAGGATCGAGCGGGTTTCGCCTGCTACCGAAAGCTTTCGGCGCGATGGTATATTTGTGGGAAAAATCCTGGCAAGACATCGGGGCTGAGGTTACTCTGCGGGAGTGGACTGTAACTCACGCCGCGTTTTTGCGCGAGCGGTCAGACCCGAATGAAGAGTCTGAACGTCCCGATCTTTGATAATTTGGGTAATCTGGGCATTTGCCGCCCCCCTCCGGAACCCTCAAAAACGGGGGGGGGTTCGGCAAACCCGCAATCTTTCCACTCATCACGACTTACGTCAAATTTCGAGGTCTGTTTATGAAGTCTGACATTGGCGCAAATAACAAGATGACGGGGGGTTCGGCAAAACCCCTTGTTAAGTGCCTATTTAGCCGCTACTTATGAAGGGGGGA # Right flank : GGATGTTACTCAGTCCGGGTTCACTCCTTAGAGCCTGTCCGGGAAGACTATTTTGATGCAACTCTATATTTAAACGGGGGATAACGCTCTTGTGGATCCATGCGATTGAGGATCAGCTGGATTGACCGCACACGGATCATGGATTCGCTGGAACTATTCAGTCGCTCATAATTACGACTCAACCGCCGGGCCCGCCCGAGCCACCCGAACGTCCGCTCGACGACCCACCGCTTGGGTAACAGGGTGAACCCCTTCACCCCGTCCGGTCGGCGGACGATGACGAGTTCCCATCCGAGTTCCGGGTGGCCGTCCTTCCACCCGTTCAGGGTATGGTTGTGATACTTCCCGTCGGCCCACACGACCTTCAACCGCGGGTACGCCTCCCGGTCCAACGATTCGAGTACGGTCGGGGCCGCGGCCGCGTCGTCGACGTGCCCGGCGGTCACCGCCACGACCATCAACAGGCCCAGCGTATCGACCACGATCGACCGCTTCCGGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCGCCGATGTGGTTGGCCGTACAGTGGCCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.90,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : NA //