Array 1 2947380-2946558 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBJH01000001.1 Escherichia coli strain ZJ1432 1432_Genome1_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2947379 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 2947318 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 2947257 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 2947196 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 2947135 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 2947074 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 2947013 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 2946952 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 2946891 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 2946830 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 2946769 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 2946708 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 2946647 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 2946586 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2974667-2972929 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBJH01000001.1 Escherichia coli strain ZJ1432 1432_Genome1_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2974666 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 2974605 29 100.0 32 ............................. AAAATAAATGATAATCAGACGGTTAGCAACGT 2974544 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 2974483 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 2974422 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 2974361 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 2974300 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 2974239 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG 2974178 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 2974117 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 2974056 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 2973995 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 2973934 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 2973873 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 2973812 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 2973751 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 2973690 29 100.0 32 ............................. TGGCAGGCCGGTAATATGAAAACGACAGAGCA 2973629 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 2973568 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 2973506 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 2973445 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 2973384 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 2973323 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 2973262 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 2973201 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 2973140 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 2973079 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 2973018 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 2972957 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTATCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //