Array 1 516604-514684 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCNA01000001.1 Haloarcula sp. CBA1128, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 516603 37 100.0 34 ..................................... TATATGATGCCACAGGAGTCGCAGCGGTAGCCAT 516532 37 100.0 35 ..................................... ACGCCTGATGCAAACCGAACGCCACACCGACGGCG 516460 37 100.0 36 ..................................... CGGTCGGCGAGCGTGTCCTCGCCAGCCTGGCCGAGC 516387 37 100.0 35 ..................................... GGAGTTCGTGAACGGGACTGATAACTCAACATCCA 516315 37 100.0 35 ..................................... AGACACCCATGGATACACGGCCCGCCAGAAATCCT 516243 37 100.0 35 ..................................... ACGTCGATGTCGACGCTCCCGACCGATGTCGAGAC 516171 37 100.0 35 ..................................... GGTACACCCTGCCGGTCCACAGTACCAACAACTGG 516099 37 100.0 35 ..................................... TCGGCGGCCGTCTGCTTCGAAGCAGATTCACCCAT 516027 37 100.0 36 ..................................... TGCATGACGGACGCAGCCGTTGTACTGCCAACGTAC 515954 37 100.0 38 ..................................... TTCGCGCCGTCGGTCAGCTACGTCGCTGGCGAGGGCTA 515879 37 100.0 37 ..................................... GCGTTGTATCAGACGACACCGCCGACGCGAACGCCGA 515805 37 100.0 34 ..................................... AACTCTACCTCACTCACCGTCGCCACCTCCCGAG 515734 37 100.0 36 ..................................... ACGGCGATGGAGCGTGACGGGTCGGACCCGCGAGCC 515661 37 100.0 36 ..................................... CGTGGGGATGAGTGACGATACCGCCGAATCCGCCCT 515588 37 100.0 35 ..................................... ATATCGGAACTGGAGCACTGCAGCAAACCGCCAAG 515516 37 100.0 37 ..................................... ATGACGGTCGGCCGCTCGTCTAAGTCCTCGGCAAGCT 515442 37 100.0 35 ..................................... TGCGCCATGAGGTTTTGTCCGGACTGCGGGGCACG 515370 37 100.0 34 ..................................... GACACGACCGTCTTCGCCGCGCCGAAGGCCGCCG 515299 37 100.0 36 ..................................... AGGTTGCCGGATGACGACGTGTCGACGATGAGTTCG 515226 37 100.0 35 ..................................... CTGGTGGCGGCGTCGCCACTGGCTGGCATCGCGGC 515154 37 100.0 34 ..................................... AGTAGCGGTGGCTGACGATTCGGCAGTAGATCGG 515083 37 100.0 36 ..................................... CAAGCAAGCGAAACTATGCGTTAGGTGAGTTTAATT 515010 37 100.0 36 ..................................... ACGGCGTGACCTATGTTGTCGGTTCAAGCGTTGAAT 514937 37 100.0 36 ..................................... GCTCATCCTGGAGGATATACGATCATGAACCTACAA 514864 37 100.0 35 ..................................... AACTCGATGATGATGTCCCGCTCGCTTGCCCACTC 514792 37 100.0 35 ..................................... TAGACGGCTGTCGAGGGGTCAAGACTGACCGGGAG 514720 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 27 37 100.0 35 GTCGCGACGTGGTAGAAACCCAGTGCGGGATTGAAAC # Left flank : CTGCAGCTGAAGGGGAGACGATTGCAAACTTTGGCGGGGGTCCGCGGGAGATTTTCTTAGCGTTCACGATTGCTGCATTGGTCACCACAGACCAGATCGACACGGTATTACAGTTCACTGATATCGATGGAGAGGTGCGACAGCTCCGACTACCGGAATTGATGACATCGCCGCCCTCGAAAACCCACACGACGCTGCAAACCGTCGCAACAGCAGGCCAGGAGACGACACTTCCAGAGATCGCAGAACAGAGTGGACAGTCTCGAAGTACTGTCGGTCGGCATCTTGATGCGCTTGAATCGGCCGGTGCTGTCAAAACAGAAAAGCGAGGGAAGACAAGACATGTTCAATTGACGCTGGGAGGGCAACTTCGGTTTGCTCGACTTGATTGATTCGTCGACCTTTTTGAAGGTCGTGTACGGCGGGGGTCCACGATCAGTTGGGTCTTTCTCACCGATTATGCGAAAGTTATAGACTCTCTGGTTCCAAAATCACCCCCT # Right flank : GCTGGGGATTCAGCTCAATCGCAGAGCCGTGTTTTATCATTTGTACTTTTGAAAACGTAGAAACAGGCCTCCAATTTTCACTTTCACTCTGGATGGCTCGCCCTTTTTATTGAACCTCAGTATTCCTCTAACAAGCGATGATCACTGACGCCAGAGCACTCCGGCCCGAGTACGTCCCAAGAGATCTCCACCATCGCGACGGACAGATAGACCATCTCTCTTCGGTTCTTGCACCATCACCTCTAAACCGTACCGAGGATATCTGTCTATTCGGACCCAGCGGCGTCGGAAAGACCACGATTGCGAAGTTCGTTCTCGGCCAGCTTGAAAGGGAGATGCTGGATCTTCGGTGGGGATACGTGAACTGTATGCGCGACAATAGCGCAAGCGCAGTACTGCACGAGTTCGCCCGCGAGGTCGGTATCGGTTCCGACCTCCGGAGAGAGGGAACCCCACGCTCGGTCGTGATCGACCGGCTTCGCAATCGTGACGAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGACGTGGTAGAAACCCAGTGCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : NA // Array 2 526363-529003 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCNA01000001.1 Haloarcula sp. CBA1128, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 526363 37 100.0 36 ..................................... GGGTTCCACGTCACGTCAGTCCAGGCGATGTCTGAT 526436 37 100.0 37 ..................................... TCGCCCGTAACGGTATAGAGCTTCTCTGTACTGAGCG 526510 37 100.0 36 ..................................... CGGTCTTGATGGCGCGACGGTGGGATTCGCGCGTGC 526583 37 100.0 35 ..................................... TCCGTAGTCGGCTGGGCTGCAACGACGTTCCAGAC 526655 37 100.0 35 ..................................... TATCCGAACCCCATGCCCGATCTCGAGCAGCAGGA 526727 37 100.0 36 ..................................... ATCACGACGTTGATTACCATAACGATAGCCAGCGCG 526800 37 100.0 32 ..................................... CCGTCCTCGAAGCCGTCAAAAACGACAGTCTG 526869 37 100.0 34 ..................................... TGTTGTTCATGTGACTCTCTCCGCCGTCTCACGG 526940 37 100.0 37 ..................................... CGCAACTTCGCGAGCGACGTTCTCGAACCCGGCGCGG 527014 37 100.0 35 ..................................... ATCGTTCGCGGCGCGGAGGACTCCAACGGCAACCG 527086 37 100.0 34 ..................................... CGACCAAATCATCTCCCGTCACCCTCCGGTTCGG 527157 37 100.0 35 ..................................... GCGTCTTCGCGAGTGTCAAGCCGCGCGACGGTGTT 527229 37 100.0 32 ..................................... TTATCATAGTGCGCTGGCTCATCGCAATAGAT 527298 37 100.0 38 ..................................... ATGGCGAGTAACACCGACCGTACCGGCGGCGCAATCGA 527373 37 100.0 34 ..................................... CGTTCTCCGACGCGATCAACCAGGTCGAGCAGGT 527444 37 100.0 34 ..................................... GTCCTGTTGGCCGACCACAAAGGGTATGAGTTTG 527515 37 100.0 37 ..................................... AGCAGGCGTGAGCCTATCAGACTACGGAGCGCGGTCC 527589 37 100.0 35 ..................................... TCGTTGGAGCGAGCGGATACGCGCCATATGTCCCG 527661 37 100.0 34 ..................................... ATGGCGATGAGTGAGAACGAACTTGAGGAGGTGC 527732 37 100.0 37 ..................................... CGTCGGTATCGAACTCGGTGCCACACTCGTCGCAGCG 527806 37 100.0 37 ..................................... ACACGCGTGATGGGGCCGCCACGCTGGTCGTCGCTAT 527880 37 100.0 35 ..................................... TGCTAGCCGTCACAGTGTTCTCGGCGGCGCTCGTG 527952 37 100.0 36 ..................................... CGGTTTTGCGAACAACTCGCCAACCGCCGCGATGAC 528025 37 100.0 35 ..................................... AGGCCCGGGGCGGTTCTCCTGCGGCCACGTCTCAA 528097 37 100.0 33 ..................................... AGGATGTCCTGCTTGCCCCGTGGGCCAAAGAAG 528167 37 100.0 37 ..................................... ATTATCTTCAAGATAGCTACCACCGAGGTAGCCAACA 528241 37 100.0 32 ..................................... GGGCCGTCCGACTCGCGGAGCTTTTCGAGCAG 528310 37 100.0 36 ..................................... GCTAAGTGGCTGTATCACCGAAACTGGGTAACAGTC 528383 37 100.0 35 ..................................... CATATACGGCGGTTTAAGCCGCCGTCCGTTGCTCT 528455 37 100.0 37 ..................................... GCGTCGTATCGCGACGCTGGCGTTCGGTAGCTATGTG 528529 37 100.0 37 ..................................... GCGTCGTATCGCGACGCTGGCGTTCGGTAGCTATGTG 528603 37 100.0 35 ..................................... AGACTCCGTTAGATGCGGTTTGTAGCCGCCAGAGC 528675 37 100.0 34 ..................................... CATCTCCGCGAGTGGGAAATCGAACTCGTCGAAC 528746 37 100.0 37 ..................................... ATCACCCTCGGGTCGGAGGGAAACGACTGTGCGGCCG 528820 37 100.0 37 ..................................... TCTCTGGCCTCACTGTGTCGGATAACGCAGGGGCCTC 528894 37 100.0 36 ..................................... AGCATGGCAATGATGGCGCTGGTCGTTCGCTCCGCT 528967 37 86.5 0 .......................AC...A....CG.. | ========== ====== ====== ====== ===================================== ====================================== ================== 37 37 99.6 35 GTCGCGACGGGGCAGAAACCCAATGCGGGATTGAAAC # Left flank : GTATTTTGAGTACGAGGTGAGCCGACGAAAAGCGATCCACCAGCAATCGATTCTCCTTCGAAAAGCGATCACTGGGGAGCTTGATGCATACCACCCGTTGGAGGTCAGTCGGTGAGACTCGCAATTACCTATGATGTTAGTGACGACGCGAACCGGCGCCGAGTGTACCAGACGCTCGAACGGTATGGCGCGTGGCGGCAGTACAGCGTCTTTGAGGTTGATGTTTCGAAGGCGGAACGGGTCGAGTTAGAGGACGAACTTTCGAATCAAATCAACGAGAGCGACGGTGATCGGATCCGAGTGTATCGTTTATGCGAGTCGTGTCTTGATGATATCACTGACCTCGGTTCCGGCCCGCCCGATGACCAATCGAACGTGATCTAAGGGTAGTCTTCGTGGACCTTTTTTAATTCTGTGTACAGCAGGGGTCCACGAAGAACAGTTCTTGAATGACTCACCAAGCGCAATCTATAGGGCCTATGAAAGATATATTACCCCCT # Right flank : CTTATTAAACAAGTCGTAACAGATAGTCCGATTTCCACTCGAAACACGCTGTGTCTACGCACTGATCACGCCGTCCGCAACCACTATCCTAACGGAAACTGAAGTAATCGTAATGCGAATCGAAGCTACCGACGGGAACGAACACAAGGTCTGGCTCACCGACAGCGAAATCGAGGACCTTCGCCGCGCCACGAACAGCCAGCGCGACGACCTTATCATCCAACTGGGCGCGTTCGTCGGTCTCCGCGCTTTCGAGATTCCACAGGTCCGCCCTGTTGACGTGAAGGCGACCGACAGCGGACAGTACCGCCTCCGGGTTCGCGCCGGCAAGGACACCAGCGGCAACGGCGGGAAGCCCCGTGACGCCTATCTCCCCGACAGCGTCGAGCGGGACCTCCAGCGCTACCAGAACGAGCACAACATCGCTCCGAAGGACTCGTTCATCGACCTGAAGCAACCCGGCGTCCGCGCGGTCGTCCGGCGCACCGCTGCCCGAGCTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGACGGGGCAGAAACCCAATGCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.60,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA //