Array 1 201379-202993 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEDUQ010000004.1 Escherichia coli strain GDB8P77M GDB8P77M_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 201379 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 201440 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 201501 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 201562 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 201623 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 201684 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 201745 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 201806 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 201867 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 201928 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 201989 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 202050 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 202111 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 202172 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 202233 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 202294 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 202355 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 202416 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 202477 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 202538 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 202599 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 202660 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 202721 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 202782 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 202843 29 100.0 31 ............................. ATTACGCGCCAGCAATGCTGACAGCGGCAAA T [202871] 202904 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 202965 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 218495-219195 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEDUQ010000004.1 Escherichia coli strain GDB8P77M GDB8P77M_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 218495 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 218556 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 218617 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 218678 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 218739 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 218800 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 218861 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 218922 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 218983 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 219045 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 219106 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 219167 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //