Array 1 308-7 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHHU010000123.1 Klebsiella pneumoniae strain 4928STDY7387849, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 307 37 97.3 29 ....................................A CGTGCCTTCAAATCCAAAAAAGGTTTGTT 241 37 100.0 29 ..................................... GTTTTAAATTCATACATAACGAAACATGT 175 37 100.0 29 ..................................... TAGAAAAGACGTGACAGAGCAAACAGCGC 109 37 97.3 29 ....................................A GGTACAATTTATGGATTGTCACATGTCAT 43 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 5 37 98.9 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : | # Right flank : TGATGAA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [8.3-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 177-8 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHHU010000167.1 Klebsiella pneumoniae strain 4928STDY7387849, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 176 37 100.0 29 ..................................... CGTGCCTTCAAATCCAAAAAAGGTTTGTT 110 37 97.3 29 ....................................T TAGAAAAGACGTGACAGAGCAAACAGCGC 44 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 3 37 99.1 30 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Left flank : CCCACAG # Right flank : AGGTACAA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [8.3-5.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 9-176 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHHU010000172.1 Klebsiella pneumoniae strain 4928STDY7387849, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 9 37 97.3 29 .A................................... TTAACAGCTGTGAAGGGCATTCTAACGAG 75 37 100.0 29 ..................................... GTGAAAGTAAATACCATCGGTTTTCATCA 141 36 97.3 0 ....................................- | ========== ====== ====== ====== ===================================== ============================= ================== 3 37 98.2 30 GTTTTGGTACCATTCTAAACAACATGACTCTAAAACT # Left flank : TCATTAGAG # Right flank : | # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGTACCATTCTAAACAACATGACTCTAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: F [matched GTTTTGGTACCATTCTAAACAACATGACTCTAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [11.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1-150 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHHU010000191.1 Klebsiella pneumoniae strain 4928STDY7387849, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 1 37 97.3 29 ....................................A GGTACAATTTATGGATTGTCACATGTCAT 67 37 100.0 29 ..................................... GATGAAAACCGATGGTATTTACTTTCACA 133 18 48.6 0 ..................------------------- | ========== ====== ====== ====== ===================================== ============================= ================== 3 37 82.0 30 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : | # Right flank : | # Questionable array : NO Score: 4.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.10, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 159-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHHU010000182.1 Klebsiella pneumoniae strain 4928STDY7387849, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 158 26 62.2 29 -----------.AA......................G TTCTACATATGTAATGAATGCTCATTAGA 103 37 97.3 29 .A................................... TTAACAGCTGTGAAGGGCATTCTAACGAG 37 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 3 37 86.5 30 GTTTTGGTACCATTCTAAACAACATGACTCTAAAACT # Left flank : | # Right flank : T # Questionable array : NO Score: 5.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.33, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGTACCATTCTAAACAACATGACTCTAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: R [matched GTTTTGGTACCATTCTAAACAACATGACTCTAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 2613-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHHU010000040.1 Klebsiella pneumoniae strain 4928STDY7387849, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2612 29 100.0 32 ............................. GAAATACGCCAAACGTTTATACCTATTAATCA 2551 29 100.0 32 ............................. CGCTGGAGAAGGCCAAAGCGGCTGGCAAAGAG 2490 29 100.0 32 ............................. TGGAACGGCCAATCGGTCACCGTTCTTGAACG 2429 29 100.0 32 ............................. GAATACCAGGCGCGCGCGGCGACCACTGCCAA 2368 29 100.0 32 ............................. GTTTGGATCTTGTCGCCGTAGCCTGGCCAGTT 2307 29 100.0 32 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGCGG 2246 29 100.0 32 ............................. ACTCGCTCAAAATGCGCAGTCTGCAGACAGCC 2185 29 100.0 32 ............................. CCTCTGAGGACGGAAAATTGATTACCGTTACC 2124 29 100.0 32 ............................. CTGAGGGTCCTCCATATCCGCCAGGTCGAACA 2063 29 100.0 32 ............................. CACAGTTTCTGAGCAGAGAGATAACCCACTGG 2002 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 1941 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 1880 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 1819 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 1758 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 1697 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 1636 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 1575 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 1514 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 1453 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 1392 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 1331 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 1270 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 1209 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 1148 29 100.0 32 ............................. AACGTAATTGGCTTACGGGGCGGTCGGCACAA 1087 29 100.0 32 ............................. TCGCCGCCTGTTTTTGTCTCTTTCCGGGTGAG 1026 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 965 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 904 29 100.0 32 ............................. CTTGCCGTTCAGGGTGTCCACCTGGCCGACGA 843 29 100.0 32 ............................. CGGCAGCAGCTCGACGATCTCGCCCAGCGCTT 782 29 100.0 32 ............................. CGCCACGCGTAGCCAGGTGTAGTCGGTCTCCT 721 29 100.0 32 ............................. CTCCGTCCCGCCGCCGTGCTGGATCAGAACCT 660 29 100.0 32 ............................. CACCCTGGCCTTTTTGCTGTTCTCCTTTTCCT 599 29 100.0 32 ............................. CGTCCCAGACGTATCCTGTTAATTTAGTGCTC 538 29 100.0 32 ............................. GCACAGTACAAAAATCTGAACACGTTAAAAAA 477 29 100.0 32 ............................. CACACCCTGCTAAACCTGGTCGATCATTATTT 416 29 100.0 32 ............................. CCTCCGGATTCATGTCCCATCTGGGCAATGAA 355 29 96.6 32 C............................ GAGATACCGTTTTAATTCAATACGGCGGCGGC 294 29 100.0 32 ............................. GGCAAAAAACGGATCCGCCACGTGGAGTGGGA 233 29 100.0 32 ............................. TCGTTATGAAGTATTGGTCGGGCGTTGGTGGG 172 29 93.1 32 ........T...........A........ AATATTAATCACACATTATTGCGATTGGCTCA 111 29 100.0 32 ............................. ACTGATATCACCGAACTGGCTCGGGCCATGAA 50 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 43 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10-246 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHHU010000067.1 Klebsiella pneumoniae strain 4928STDY7387849, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================== ================== 10 37 100.0 29 ..................................... ACAAACCTTTTTTGGATTTGAAGGCACGT 76 37 100.0 29 ..................................... CTGTGGGGCTTGCTACTTTTCCGGCGCTG 142 37 100.0 31 ..................................... GCGTGTTAGGAGGAGAAAACGAATGAGCAGT 210 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== =============================== ================== 4 37 99.3 30 GTTTTGGTACCATTCTAAACAACATGACTCTAAAACA # Left flank : TTTAAAACAG # Right flank : CTCGGAGAATTATTTTTTCTCCAAAGTTCCGTACTCGCATCACTTATCCATAGCTAGATTTCAGTTTAGAATGAACCACTAATCAATAACAATTTAAGCTTTTTCATAACTCAAATAAAAGTTTTCGTCCAAAATATATTGGAATCTGTTCTGGACCACCCTTTGTTCTAAAAACAGGACATCCACATTATTTAAAGAGATATATTCTACCACTTGTTGCACTTCATCCTCTGTCAAATACGTACACGCATTAATAAAAATCAATAATTTTTTCTTTGATAAATAACGATGTACTTGTGTAATTTCCATAACTTTTTCAAAAATCGTATCACTCGTTGTTTCGATTTTGATTCCAAGAGCTTTGAAAAGTTCCTGCACAGTGATGCCATCTTCTTCCAAATCCATTTCATGTTCCAACAATTCATAGCCAATTAATTGACTAATTGTTCCAGTTAACTTCTCAATCATTGATTTGACTTCTGGTTTATCATTTAATTGTG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGTACCATTCTAAACAACATGACTCTAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: F [matched GTTTTGGTACCATTCTAAACAACATGACTCTAAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //