Array 1 3777672-3776423 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXUZ010000001.1 Escherichia fergusonii strain RHB08-C04 RHB08-C04_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3777671 29 100.0 32 ............................. GTTTGTTTTGCTCTACAGCGCGGGTAATTTCG 3777610 29 96.6 32 ............................C AAATTGCGACCATGAACATTACCAGTTTGGGA 3777549 29 100.0 32 ............................. CCTGAAAAAAATGCTTTAATTGGATTCCAGAA 3777488 29 100.0 32 ............................. GGTATTGGCATGGATGCCGCTGTCGGCAAGTG 3777427 29 100.0 32 ............................. GCTACATTCGCTGATTGGAACTTCCATTTCTG 3777366 29 100.0 32 ............................. TGCTTGCTGTGCCTGCCATCATTGAGGATTTA 3777305 29 100.0 32 ............................. GGCGTCAAACTCTTTGTCACTCATACCAAAGA 3777244 29 100.0 32 ............................. CAGGCGTGGAAAGTTTTTCAACCGGCGCGGCA 3777183 29 100.0 32 ............................. GCGGGTGATATAGCGCGGGGGCTGTGGGTGTA 3777122 29 100.0 32 ............................. GCAACGCCCGATATTTGGCATCTGGCGCATGT 3777061 29 100.0 32 ............................. GCTTTGATCTGGACGAAGTGGGCGAGGATGAC 3777000 29 100.0 32 ............................. TTTCTGAATATAGGGAGTGCAATCCATCAACT 3776939 29 100.0 32 ............................. GTTTCACGCTACGTTCGACACCTCCGCGACAA 3776878 29 96.6 32 ............................A CCTGTCATCCGACACATTATCAGTTCTCGCCC 3776817 29 100.0 32 ............................. TTTTCCAGCCAGCGCGGCAGATGGTTTGTAAA 3776756 29 100.0 32 ............................. TGCTGATAACATCTTCTGTGATGTCATCCTCG 3776695 29 100.0 32 ............................. GGTTAATTGTCCGCGCTCGTCAGCCAGCCCAT 3776634 29 100.0 32 ............................. CCATTGATGATCGTCGTACAAAAGATGCTTCT 3776573 29 93.1 32 ............TT............... CCCGGTAGCCAGGTTTGCAACGCCTGAACCGA 3776512 29 93.1 32 .................A........T.. GCAACGACGGTGAGATTTCACGCCTGACGCTG 3776451 29 89.7 0 .T.........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATATTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTGAGA # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAACCCCATCAAGACGCCTTGGCCAGTTCCTTAACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACATCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3793427-3792483 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXUZ010000001.1 Escherichia fergusonii strain RHB08-C04 RHB08-C04_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3793426 29 100.0 32 ............................. GCAGACGGCAAAACAGTTGGGAGTCTCAACAA 3793365 29 100.0 32 ............................. ACCAGGGAAAGTGCCAGCCTTATCCTGTGTTA 3793304 29 100.0 32 ............................. TAGCGCCGATCTGGCGGCTTTTCAGTATATTG 3793243 29 100.0 32 ............................. CGATTATTTTGGAGTAACTATTTTTCGTGAAA 3793182 29 100.0 32 ............................. AATCCCGCGCCCGTGAACTCGACTTACTCGGC 3793121 29 96.6 32 ............................A TTGATTTAAAGCGGGTGCCCGTGCGCCAGCAG 3793060 29 100.0 32 ............................. TAAACGATGAAATCGTTTTTACTCTCTCAGCA 3792999 29 100.0 32 ............................. GGGTGCTAGAGAAACAAAAAACAATACTCAGC 3792938 29 100.0 32 ............................. CCAGCGCCTCGACTGGTCGCCAGTAACGAGAA 3792877 29 100.0 32 ............................. CCGGTTATGCTTCGGCGGACGTAGCAAAGGTG 3792816 29 100.0 32 ............................. CTTATGGAGCTTCATCGGTGGTTCTGGGAGCA 3792755 29 100.0 32 ............................. GAATTATTGCTGAGGCTGAACAGGGAGGGGGC 3792694 29 96.6 32 ............T................ AAATTTCATAACGTCAATTTCGACGGCTGCGG 3792633 29 100.0 32 ............................. TTGGCGAGATTGTTAATGTTGCGATGTCTCAA 3792572 29 93.1 32 ................T.A.......... GCTTCAGATACATATACTTTAAGTGCAGCGCT 3792511 29 75.9 0 ........A..T...A.AC.A....T... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 97.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCCATTTTGCCCATTCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ATAATATCGACGATACCAACCTAATATTATCAAACGTAAAAATTCCAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATGCCTCCTGAACGGCGTGAGTCAAAATATTGCATTTTTATCAAAATTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAACATGAAATATATGAATTGGTGAGTTATAAAGATTATCTGTACTCAACAGGCCATGAACTTGTTGATTTTCAAGAGGGAGTATTACGATTTCAGAAAATTAGGATAAAATACAGACAAGAGCTAAAAGAACTCGGTTATCCTGTAGGTAATTAATAAATATTGTCTTTATGGTTGGAAAACGTAATTTTTTATATTGTAAATATTAGATTAAAACAATAAGTTAATATCATGCTTTTACTTTTATTCTCGATAATACCTAATTTCATTAAATACGTTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATTA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //