Array 1 40117-39479 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJVC01000035.1 Escherichia coli strain ME2L-19-450 NODE_35_length_40117_cov_17.749012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40116 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 40055 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 39994 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 39933 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 39872 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 39811 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 39751 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 39690 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 39629 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 39568 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 39507 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 737-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJVC01000006.1 Escherichia coli strain ME2L-19-450 NODE_6_length_248658_cov_19.254145, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 736 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 675 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 614 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 553 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 492 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 431 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 370 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 309 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 248 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 187 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 126 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 65 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGTGTGGTAATTGGTGGTCTGGCTGGTGGTTTAGTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18036-16238 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJVC01000006.1 Escherichia coli strain ME2L-19-450 NODE_6_length_248658_cov_19.254145, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18035 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 17974 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 17913 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 17852 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 17791 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 17730 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 17669 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 17608 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 17547 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 17486 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 17425 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 17364 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 17303 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 17242 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 17181 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 17120 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 17059 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 16998 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 16937 29 100.0 32 ............................. CGGCGTTCCGTGCGGTAATTGGAATCACACCA 16876 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 16815 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 16754 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 16693 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 16632 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 16571 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 16510 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 16449 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 16388 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 16327 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 16266 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //