Array 1 403466-406635 **** Predicted by CRISPRDetect 2.4 *** >NC_017459.1 Haloquadratum walsbyi C23, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 403466 37 100.0 36 ..................................... CCTTCTAATTTGGTGCACCGTTGAGACAGTGACATC 403539 37 100.0 35 ..................................... AAACCGAGTGACTGCCAGGCGTCTCCTGCCTGCCG 403611 37 100.0 37 ..................................... GGGATTGAAGTAGCTCCCGGAATTCTCCCGCTTTAAT 403685 37 100.0 38 ..................................... AAGCCGAATCGCTGGGTCAATTGAACATACTACGGTGG 403760 37 100.0 37 ..................................... GCTATCATCATCGTCACCGCCACCACCGAATGATGGC 403834 37 100.0 36 ..................................... GCGGCTCCGTCTTCACGACTAAAACAGCAGAAGATC 403907 37 100.0 36 ..................................... GTTTATCTTCCTCAGGTTCGAGTTCAAACCCAATTT 403980 37 100.0 36 ..................................... ATTCCTCAGTTTTCGAGATTGGTTGGTGCTAGCCAT 404053 37 100.0 35 ..................................... AATTCTCTCAGACTGTACTGTCGTTGTGAAGCGTC 404125 37 100.0 34 ..................................... CACGTTTGGTTGTCGGGCTGGCACGGTCAACCGC 404196 37 100.0 36 ..................................... CAGTCCCAAGTAGCGCAGCATCGTCCACCCAAGTAG 404269 37 100.0 39 ..................................... TATTTGTCACGGCATTGCCATCTGTATCAGTATCGGTAT 404345 37 100.0 37 ..................................... TGATTATCATTCACACACCATGACACATTCTGCTGCT 404419 37 100.0 35 ..................................... TAACTCTCCAAAGTGTACAAATTGCGGTTCTCATG 404491 37 100.0 37 ..................................... GCAGCCCCCGTCTTCACGACAATAAATCTGGTATAAA 404565 37 100.0 39 ..................................... GAAAATGCAAGTACAGGAGTTGGTAAAACAACTTGTGCT 404641 37 100.0 37 ..................................... AATAGACAACAGTTTAAAGGAATAGACAGTCTTTTAG 404715 37 100.0 36 ..................................... AATTGGATGTATGAGCAGTCTGTGAAAAATGGGTTC 404788 37 100.0 36 ..................................... TGCACGGAACTCTCGAATATCGATAAGATTACCTGT 404861 37 100.0 33 ..................................... ATGACTCCGACAGAGGACCCAGTGAATACTGTT 404931 37 100.0 37 ..................................... ACATGGGCAACTGGCGTAGGGTTGACTGCCGTAGAGG 405005 37 100.0 33 ..................................... AACACGGGATGATGTTCGAAAGCTACGCCGAAT 405075 37 100.0 37 ..................................... CTGATGTTTTGGTCACTGCTCAGAAAAACACGGCAGC 405149 37 100.0 37 ..................................... CTGATGTTTTGGTCACTGCTCAGAAAAACACGGCAGC 405223 37 100.0 36 ..................................... TTTCAAAGCCGACGGCGAACAGCACTGCCGGCAAGT 405296 37 100.0 36 ..................................... CTCTCAGCCTCAACGGCATTCTTTGCAGCCTTAATC 405369 37 100.0 35 ..................................... TATTTGCATGAGCTAACCCACGTTATCGCTGTTTA 405441 37 100.0 36 ..................................... TCCCCGTGGTCAAATCCGCTGTCTTAACTGTATTAT 405514 37 100.0 35 ..................................... AGCACGGCTAACGACGTGGTGGATCTAAGTAAGCC 405586 37 100.0 38 ..................................... TGGTTGACCGGTGAACTGGGAACACCGGGAACACAGAC 405661 37 100.0 36 ..................................... ATTGCTATCATTGGCTATGTGCTGCTGCAACGTGTT 405734 37 100.0 36 ..................................... CGCCGAGGAGGCAGTCGCTGCCGTGCTGTCTGTTCG 405807 37 100.0 35 ..................................... ACTCCGCGAGGATAGTAATTCAAAATTGGTGAAAA 405879 37 100.0 35 ..................................... GATGATCAGCCAGTTCAACATGATGATCCAGGTCG 405951 37 100.0 36 ..................................... GATGAGTCGTGAGCGTAGATCGTCTGTGGTTGATTG 406024 37 100.0 36 ..................................... GATGAGTCGTGAGCGTAGATCGTCTGTGGTTGATTG 406097 37 100.0 35 ..................................... ACCACTTTCCTCGTGGATTCTAACACGTTGAGTTC 406169 37 100.0 37 ..................................... CCGGCGGCTTCGTCCAAGACAATCACGGAGGGTTGGT 406243 37 100.0 35 ..................................... ACCAATAGGTTAGTTCTCGCCAGTGTTCATCATGT 406315 37 100.0 37 ..................................... ACCATCTAGATCAAGACAGAAACCGGTCTGCCTCAGT 406389 37 97.3 33 .......T............................. CCGATCCACCGAAATTCGTGAAGTGACTACCTG 406459 37 100.0 33 ..................................... GATACGAGTTTTCTAACTTGGTTCGGACGGTCT 406529 37 100.0 35 ..................................... AGAGTCCCCGAGTCCGTCGAGATCCGGGAGTCCAA 406601 35 83.8 0 .....................A....CCA..--.... | ========== ====== ====== ====== ===================================== ======================================= ================== 44 37 99.6 36 GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAAC # Left flank : TTGAGTACACTGTCACACGGCGGAAGTCGATTCGCCAGCAGGCGATCCTGTTGCGGAAAGCAATCACTGGTGAGTTGGACGAGTATCATGCCCTGACCTTCTCAAAATAATCATGCGCTTAGCAATTACATACGACGTCAGCGACGACGGGAATCGGCGGCAGGTGTATCAAACGCTCCAACGATATGGAGCATGGCGACAATTCAGTGTTTTTGAAGTCGATATTACCAAAGCCGAGCGTGTTGAGCTTGAAAACGAGCTGGAAGCCAAAATCGAACCCAATGACGGTGATCGCGTTCGGATCTATCGGTTGTGTAAGGCCTGTCAGGACAAGACGACCAATCTTGGTATGGAACCACCTGATGAGCAATCGAACGTGCTCTAGATTAGACTACTTCAACCCTTATTAAATGACTGTACAGCCACAGTCAACGTAATAGGGGTATGATTTTGACTCCTGAGAAAGCTTTTTGAGTATTATACCCGTATTTTAACCCCCT # Right flank : CCCTGCCGTAATCGTCAAACTCGCAATCATGAGGGCACAACTGAGCAGCCCTACTGAATTCTCAGGATTTTCGAGTCATATTCTCACATTATTGATCTCAGTTTAATCGTCAGTAACAACACCTTCACACGAGCTATCCTTACCATCTTTGTCTTCCTGAGCTCAGAGTTTTCTCATGTTCACGGTCGAAGTTCTCCTGAATGACTGCCTTTCTCCTCAAACTCATGCTTATCTGAAGAGATGTTGGCGTTGATAACACCTAAATCCTCTATTGATGAGGATTTTATAATCCAAATTGGTATATTTGCTCTCTATAGATTGTCTCAATATCCTCATAATATGTATGAATATATTCGTCCATTACATCAAGATTCTCTAGTTTTGAACCACCGGGCGTATCACCGCGCATATATTTAACCAACTCTCGGCTCAAATCCTGTTCTACCCCCCAGTAAGTTGTAAATCGATGACGACCATAGTGACTTGTTACTGCCCGGAAT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 2 1391076-1392481 **** Predicted by CRISPRDetect 2.4 *** >NC_017459.1 Haloquadratum walsbyi C23, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1391076 30 100.0 35 .............................. ACGCGATAGTTTCGTGATGAGGCAGTATTGAGAAT 1391141 30 100.0 36 .............................. AAGGGGTAACAATCGACCCAACAGGAGAGCATTTGA 1391207 30 100.0 37 .............................. ATGCAGGAAAATCAGCCTCCGCGAGAGAGTTATGCTC 1391274 30 100.0 36 .............................. GTCCGTGCCGGTGGCAGGATTGTCGTCGCCAGGTGA 1391340 30 100.0 36 .............................. CCCTTCATAGATAACTGTAAGATTTGAGTTGGTTTG 1391406 30 100.0 38 .............................. TGCCCGATAACGCCAGCGACGATTGCGAGCATAAACGC 1391474 30 100.0 34 .............................. CGTTGAGATGTCGGTCGCCTGTTTTTGTGCGCTG 1391538 30 100.0 36 .............................. AGTCATCGGAAGATGCCTCCCTGCTCGCCAGTCGGC 1391604 30 100.0 35 .............................. CGCGCTCGAGACGATGTTGACGCAATCAGCAACGA 1391669 30 100.0 36 .............................. TGAAAGTCGTTGTGTGACCACAATATAACTAATCTG 1391735 30 100.0 35 .............................. CGTGTTCAGTACGTCTGAATTAATCGGACTATCAA 1391800 30 100.0 36 .............................. AAGCCATACGACCGGCGTCGAAAACGGTCCCGACGT 1391866 30 100.0 35 .............................. CGATATTAACGTTTGAATCAAACGAATAATCAATA 1391931 30 100.0 35 .............................. ATAACCACTTAGTTCATCACGAACATACTCGCCGA 1391996 30 100.0 36 .............................. CGGGGTTGTCATTATCAAAAGCGTCTATCATATCGC 1392062 30 100.0 35 .............................. TAACAGCTTCAGCAGCGGTCCCAGCCACGGACAGG 1392127 30 100.0 37 .............................. TTTAGGTGGTTGATTGTCGGATAGATCATCAAAGATG 1392194 30 100.0 35 .............................. ACTGAGGCATTTACTGCAAAGGGTTTCTCGATCGA 1392259 30 100.0 34 .............................. TGTTGATGTTGGCCCAACAACTAACGGCAAGAGA 1392323 30 100.0 35 .............................. ATCACACGTATGCTGACGCAACCGAAAACGCAAAA 1392388 30 90.0 34 C..................C........C. GTCGGTCGATCATCGGCTGCGAGTCGATGGCCCT 1392452 30 70.0 0 A........AG.G.T....C...C.A...C | ========== ====== ====== ====== ============================== ====================================== ================== 22 30 98.2 36 GTTTCAGATGAACCCTTGTTGGGTTGAAGT # Left flank : CATTTGATGGGTGAGAGCTCATATGTATTATTTATCCAGTGTCGTGTTGTCGGTGTTGATATTGCTGTTTCGGTGATATGTATTTGCTCAATTATATTGAATCTGTGACGTGCCGTGTATTATCTACTCTATATCGCCTAGACTGACTTTGTTTATTCTGCGGGTTTTTTATTCACGATCCGCTTTGCGAGGCAGCCATCGATATATCCACCGGGGCGGTGTCCCCCATGATCATCCTGAAGAGAGTGATGTCGTTCTGAATTGTGCATGATTCCGGCTGCTCGATGTGCGATTTTGGAGATGAAATATTCTCTGTATGTAATCAGTTGGGCTGGGTGTGGAGACCACTGATACAGAAGATTACTCACTCATGATTCATCATCCCTCATCTTGTCTTTATTTCCGTCGACCCCCCAGGGGAAAACACCCTATTGGGGGTCGACGGAAAATATTTATTCTAACTTGCCGTGGTTATATTTGTGCCTTGTATATTGGGCATG # Right flank : CTCCAATTCAGGTTGTTTCCAACCAACTACGTGAGATTTGATCATTATTAATCCGCAGATCATCTGTCTTTAGTTAAGCCTCACACCTCGGTTGTGTAGCGGTAGCGAGTGTCTCTCGTAAGATTGGTCGTTGCTTGTGGATCTTCTGAGCGTCTTCGATCAGCCGGTCGAGCAGCGGCGGTGATGAGTATCCGAGGAGCTCACCGAGTTCGTGGAGGATGAGTTGGGCGTGCAACCGATAATGACCGCGACGCGATTTGAAAGTTCATTCTCAATTCTGGAGGTAAGCGGTCTCTATCCGTGACTCCCGGGGAGCGTGAGATCATGAATTTGTCGTTTATATGTGAGTGGTGAAAATTGCTGTATTAATATTTCTCCCGGCTGATTTTGAAGCCCGGTAAGTCAGAAGAAGAAGATTCTAACAGAGTGATAGTAATTCTTAAATGCTTTCAAATCGCTGTACACTTGGCTTACAGCTATCTTAATCCGTTATTTTCTTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGAACCCTTGTTGGGTTGAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 1403321-1404737 **** Predicted by CRISPRDetect 2.4 *** >NC_017459.1 Haloquadratum walsbyi C23, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1403321 30 100.0 36 .............................. AAGCTCGAAGGTGCGCGTTGGTGATGCACCGAACTC 1403387 30 100.0 36 .............................. GACAAACGTGGTCGCGGTGGGGAGTGCGCCCGCCTC 1403453 30 100.0 34 .............................. CACCAACACAATCGCCGGAGCTATCCACGGGAGT 1403517 30 100.0 36 .............................. AATAATTAGATACAGCCAATGAATCTTAAAACTAGA 1403583 30 100.0 34 .............................. AGGCAGTCACACCGCCGATGACGGGAGTGCAGAC 1403647 30 100.0 36 .............................. GACCTGAGATATGATGATGACCCATAAGACAAACAT 1403713 30 100.0 36 .............................. AATCTGCAGAACCCGTTTGTCGCATCGAATGCGCTG 1403779 30 100.0 36 .............................. CTCGCGTTCCTTGTCGTAACGCTCTCGACGGTAATC 1403845 30 100.0 36 .............................. CTCCAGTAGTCTGTCGTCGTCGCTGACGCTGCGTAG 1403911 30 100.0 36 .............................. CCGCCCGGTGAAACGCGGTTTTTGATTGAGAAACCA 1403977 30 100.0 37 .............................. CTTACAGACGGGGAGGGCGATCGTCGTGTCGCCAGCG 1404044 30 100.0 38 .............................. TGCCCGATAACGCCAGCGACGATTGCGAGCATAAACGC 1404112 30 96.7 35 ..................T........... ACGCAGTGAGTCCGTCGATGTCGAGATTACGACCG 1404177 30 100.0 37 .............................. ACACTCGGCACAAAATGCGGTCAGAAACAGACCGCCG 1404244 30 100.0 36 .............................. GGCTTGTGCTGCGTTCTCGGCTGTTTTGCGTGGTGT 1404310 30 100.0 37 .............................. CGGCAATTGGAGGATACTAATAGACATGGCATTAACC 1404377 30 100.0 37 .............................. TTTCCATCGTCGCAGTTAACCCAGATCTCATTATCCT 1404444 30 100.0 37 .............................. ATCCTGCAGTTGCGCTCGCTCTCGCTCGTAATCGCTG 1404511 30 100.0 37 .............................. AAGTTCAGGACTTGTCTCTACAAGCACGTCGTGAAGA 1404578 30 100.0 35 .............................. ATTTTCGTTTAGGGAGGGATCCTGGTGTCGTAGGA 1404643 30 100.0 35 .............................. CGGGATATCCTTGATGAGATGCAACTCAGTTAGGT 1404708 30 83.3 0 ..............T.C.T.........TC | ========== ====== ====== ====== ============================== ====================================== ================== 22 30 99.1 36 GTTTCAGATGAACCCTTGATGGGTTGAAGT # Left flank : TTGAACGAACTGTCGAGCATCCGACGCTGAATCGCAAAGTCAGCTATCAGTACCTGCTCCGGATTGAGGCATACAAAATCAAGAAACACTTGCTTACCGGTGAGGAGTACGAGCCCTTCCAGCGGTGGTGGTAAAATGTACGTTGTAATGGTCTACGATCTGGAAGCTGACCGGACGCAGAAAGCTCTCAAACTCGGTCGACGCTATCTGACTCATGTCCAGAACTCGGTGCTCGAAGGCGAGATCTCAGAAGGCGATCTCACAAAGCTGGAAGACGAAATTGATGACCTGCTGAAGCCCGGAGAGTCAACCATTATTTACGAGCTATCTTCGGATACCCTGCTTAATCGGACGGTTTATGGTGAAGATCCGACTGAGGATCAACGATTTCTGTAGTCGTTTCCGTCGACCCCCTGGGGGAAAGCACCCTATTGCAGGTCGACGGAAAATATTTATTGTAACCTGCTGTAAGCACATCTATGTCCTGCATATTGGGCATG # Right flank : CCTGCTCTGCTTGGAGATCGCGAGCACAGCTCTCTCTGATACAATACACACAAACCCATGAAGAGATACTACCAAGTCAGGAACCGATTATTCGGTTAAATTACTACTTTTATTATCATTTCTGGGAACACAAATCGAAAACGGGGTATTCAATCTGATGTATTGATTCGAGTGAATAAGACAAGAAACGCAAATCATGCGATTATCTGATAGAAAAGTATCTGCTGTATTTACACGGATATGCGCGCTACTTTGCGCGGGCACAATGAGCATGAGTGAGTATGTGCTTTCCGTCACGTCCGACACTCATCCATACGTTGGGGCACATCTTCCAAAGTCAAAAAACACAAATCGGCTGTCAGAGAGCTTTTGAGACAGATGTCTGTATTTCATTGTATGCAGGATCCCCTCCCCTCTTCTCGACATACACAAAAGACAAAACTCGGGATATATCAATAGTCATTGCCGTGTTCTTAGCCTATCGCGTTTCGAGTATATAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGAACCCTTGATGGGTTGAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //