Array 1 930409-931109 **** Predicted by CRISPRDetect 2.4 *** >NC_017390.1 Erwinia pyrifoliae DSM 12163, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 930409 29 100.0 32 ............................. CCTCGCGTCCGTGCGGGGCTTTGCTATCATTA 930470 29 100.0 32 ............................. TTTATGACGCTGATTATTATCAGGCTAACCAT 930531 29 100.0 32 ............................. CCGGAAATTTATTTGTGAGTCGGGGAATTTGG 930592 29 100.0 32 ............................. CGGGTTAAATGACGTCATGGCGACAGCATGAA 930653 29 100.0 32 ............................. AGTATCGAATAACGTTACCGTGGCCACCATCC A [930674] 930715 29 100.0 32 ............................. GGGAGAACTTGCTTATTATCTCAAACAAAGCG 930776 29 93.1 32 .............A......T........ CCGTGTTGAAGCCATTGGTGTTACCTCTATTT 930837 29 96.6 32 .............A............... GACGTAACAGTAAATGCGCCGGTTCGCGACAA 930898 29 100.0 32 ............................. AGGTTAGAAACGAACAAGTCGGCATCAACGCC 930959 29 100.0 32 ............................. CTTTGATGATAATTTTCTTGCTTCTATTACTA 931020 29 100.0 32 ............................. TCCCGCTTTCACACAGGCCGGGATTAGCCGCT 931081 29 93.1 0 ............CC............... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.6 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : AAAAGGCAGGGGCGGTTAACTCCCTGTCTTTTTCAAGTTCCTTCAACCCTTACGGGCGCCCGGTCAGTTGCTTAATGGTAACGATAATCAGCAAACTGACGTGCAGTATCTGCAACGTCAGCAGGATTGCTCCCTGCGTTATCACCTGCATCTCCTTGATAAAGGAGCGTGCGCGCAGCCGGTGAATGCTGTTGGGCTACCCTTCACGGCGCGTACCGGTTGTTAGCAGGTACAGGCAGCACCGTTGCGCAAAGCGGCCACCAACCGCTGCGGAACAGGAATCAACCCGGTCTTACAAACCGGTTTTTTTTCGTCTTTACGCTGCCATTTCCGCTATATTGAAGATGTTCACTCAGCCGTTTGCCCCGCATATGTGGCCGTGTATCAAGCCGATTTTCCCTGCTTTAAGTCGCGAATCCGTGCGCGCTTTAGAGTGGGAAAAAGTTGGTAGAAATATGGAGTGGTAAAAAACTTTCTAAGATCAGTGAGATAGTTTTAGA # Right flank : GCTGGTACATTTATCCCTACCGTTCTATGATTAATGCGAATCGCACGATCTGTGCTAATAGCATGATTAAGGAGGAGACCATGTTAAGTTTTACCGCCAATCAGGCGAAAACGCAGTTTGGGGATTTGATGACCAAAGCGCAGCGTGAGCCGGTTAGCATCACCTGTAATGGCCGTCCTGCGGTTGTTGTCGTTCCTGCCGAAGATTACGCGGTGCTTGAACAGCTGAAGCTGGAGGCTTTACGAACCAGGCTGACCCGCTCCATAGCCCAGATGGAAGCCGGACAGGTTCACGATGGTGACGCGGTGTTCGACGAGTTGATGAAGGATCTGTAATGGGAAAATTCACACTCACGGATGATGCTAAAGAGGATATGAAGGAAATAAGGGCATATTCTGTTCAGCAATGGAATAAGGAGGTGGCGAAAGTCTACCTGGAAGGGATGCGCCTTACCATGCAGATGCTGGCGAATCATCCTGATATTGGTGATGATGTCAGCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 941242-942187 **** Predicted by CRISPRDetect 2.4 *** >NC_017390.1 Erwinia pyrifoliae DSM 12163, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 941242 29 100.0 32 ............................. CCTTCCAGCCCTCTGAGTGAGGGCTTTCCGTA 941303 29 100.0 32 ............................. GCTTAATGCCTTTGCCGATGCATTTTCCTTTT 941364 29 100.0 32 ............................. ACAGTCAACCAGTACCACTCCATTTTTTTCGT 941425 29 100.0 32 ............................. AAAGTTTGGCAGATGCGCTACAAGATTGAAGG 941486 29 100.0 32 ............................. GAAAAAATATCCGACCTCCGCGAAAAGCAGGA 941547 29 100.0 33 ............................. CCTGGTTGTAGGAGTGGGGCCGACCCGTACCGG 941609 29 100.0 32 ............................. GCCACTAGAATCAGCAGCCCGCATCAATTGCC 941670 29 100.0 32 ............................. ACGGATGTTGATATTGGGGACGTAATAGGTTG 941731 29 100.0 32 ............................. GTCAGGTAAAAGGACACTCGGTGGAAATAATT 941792 29 100.0 32 ............................. CATGGCCACCCGGCCAACCACGATCCAGTTAT 941853 29 100.0 32 ............................. CTGCAATAGCAGTACTCGTGCCTTTTTCTTAT 941914 29 96.6 32 ............................A TATGAATGAATATCTACGCAGTAAATGGGAAT 941975 29 100.0 32 ............................. GTGATCTGCGCTGCTTCTGCCACTGTGCATTC 942036 29 100.0 32 ............................. TTGTCGCAATCGCTGCTGGTGAGTGGTTCGTG 942097 29 100.0 32 ............................. TGCGGGTTGGCCAGATTGGGCGCACGGCTCAT 942158 29 96.6 0 ...........A................. | C [942163] ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.6 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : CGCCGGAGAGATATCCCCACCGCCACCCCCACCGCCACCCCCACCGCCACCCCCGCCGGATGCCCAGCCGGTTGCCATTCCTGAACCTCAGTCGCTTGGCGATGCAGGGCACCGGAGTTCGTAAAATGAGTATGCTGGTGGTGATTACTGAAAATGTTCCTCCCCGCTTGCGGGGACGTCTTGCCGTGTGGCTGCTGGAAGTGCGTGCGGGCGTGTATGTGGGTGATGTTTCGCGCCGCGTCAGGGAGATGATTTGGCAGCAGCTGGATCAATTATACGAGGAGGGCAATGTAGCGATGGTATGGGCCACCAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGGGAGAATCGGCGTCTGCCGGTGGACCTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTTTGATAGGTGAAAACGGTGCTTTTTCAGACAGGATAATCTGGTAGATTTTAGCGGGTGGAAAAAACCTTTATAATTTAAGTGGTTGGTTCTAGA # Right flank : GATGAAGGTCGTTACCACGCAATATGTATTATTGACAGATGCTAAGCGGGCCTCCTTTTAAACCAGCCAGAATACAGCTATCTCTGTAGCGAAAAAGGTGTATTTGTCCGGTAAATCCCTCTTTGGCTGGTGGGTCGATATATTTCCCCATGCGTGGGTCGCTGGTTAAAATGCCTGCTATTCTGAATGACTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGCGGCGTTCAGTTTCGATAGTTCTTTCTGAAGAAAATTCATCTATTTTTCCCTGTGGACCACCAATTGATACTTGTGCAGAGTACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGACTGATAATATACCGGTCAGGTTCATCGTAAATGATAATGCTTTTAGAAATGCAATCCTCCATATTGGAAAGTATTATCCACGGGGCGAAGAACCATCCGCAAGAAAATAATATGACGGCGGCAATAAAGAAGTAACAGCGCCTCATG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 951515-952424 **** Predicted by CRISPRDetect 2.4 *** >NC_017390.1 Erwinia pyrifoliae DSM 12163, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================================================================================================================================================================================== ================== 951515 28 100.0 32 ............................ ATCACCGCTTCCCCCCTACCTTTGCAGTCTCG 951575 28 100.0 32 ............................ TGCCGGACAGCGTGATGATTTTCAATAAACCA 951635 28 100.0 32 ............................ GTTCCAGGCTTGCCGCACATCACCAGCCCACC 951695 28 100.0 32 ............................ ATTGACGAAATTTTGACAACGCTGAAACTGCC 951755 28 100.0 32 ............................ CCCGTTGTGGCTCAAAGCCGGAGATCAGCACC 951815 28 100.0 32 ............................ TCTACGGCGAGTAGAAAATAACTATCAAGCAG 951875 28 100.0 32 ............................ GGAAACGAACAGCGTTTTCCACTGCATTAATG 951935 28 100.0 32 ............................ CATTCGTCTTGCCATCTCTTCGACCGGCAGCA 951995 28 96.4 32 ...........T................ CGGGATAGCGCCGGGAAAATCAGTTGCAACGC 952055 28 92.9 32 ...........T.........C...... CTGAAACCGTCAGGTTCCGGGTACTTTTTCTT 952115 28 92.9 195 ..............T.C........... TAGACCGGTGCTTTTTTCTGTGAGCCGGTAGAGGTTCCCTGCCGTACCGCCAGACAGCGTATAGCGTTAAACACGCTCCACACCGGCTCTTTTAAAATAAATTCCCTCATCCATAGCTATATCAATTATTGCAGATCAGAAAAAAATATCCACTGGCGCTATCATCAGATCAGGCGTACGATGAACGGGTTGAAA 952338 28 82.1 32 T..T.....T.A...A............ ATAGCGATATATATTATTGATAGTTAATGATT 952398 27 82.1 0 T..........TG.......-...T... | ========== ====== ====== ====== ============================ =================================================================================================================================================================================================== ================== 13 28 95.9 46 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGTTTAATAGGGATAAACCTTCATTTGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCGGGCGAAGGCGATGAGATGCTGCACCCGTTCCATATTCACGGCACCCAGTTCCGCATCCTGTCGGAGAACGGCAAGCCCCCGGCCGCGCATCGTAGCGGCTGGAAAGATACGGTGCGCGTTGAGGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAATCACCCGGCAGACAGGGCGCATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATACCGGGATGATGCTGGGTTTTACCGTAGCGTAATAAAAGTGGGTGGCTGCAGCGGGATAATTGTCGGAACATGGTTAACGCCTCGCGTACCCTTTTTTTTCGTCCGTCCTCAACCTATTGATTTATATCGCGTGGTTGTCAGGGTGAAAAAAAAGGGTTAAGCACAATAAAGTGGAAAAAAGTGAATGCGGTAAGCCGTTTAGCGCTGTAGAGTAACG # Right flank : ATATATTTGCAACGGTTCTCGCTGCCTGCGGTTGCGTTAAAACCGTATTGAAAGATAAGCAAAGAGGTATGTAACTTTCCAGCCAATATCATCATTTCACAGATATCCGGGAAGCAAATAACCGCTTCACAAGGAAGCGCCATATGGAAATGATTAAGCCCTCCGATTTAAAAACCATTCTGCACTCAAAACGTAGCAATATTTATTATCTGCAATACTGCCGGGTGCTGGTGAACGGCGGCCGGGTGGAATATGTTACTGACGAAGGTAAACAGTCTCTGTACTGGAATATTCCTATCGCCAACACCACTGTGGTGATGCTGGGTACCGGTACATCGGTAACCCAGGCGGCGATGCGTGAGTTTGCCCGCGCCGGGGTCCTGGTCGGGTTTTGCGGCGGCGGCGGAACTCCGCTGTACGCGGCCAATGAAGTTGAGGTCGATGTCTCTTGGCTGAATTCACAAAGTGAATACCGCCCCACGGAATATCTTCAGCACTGG # Questionable array : NO Score: 4.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-1.33, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 961957-962284 **** Predicted by CRISPRDetect 2.4 *** >NC_017390.1 Erwinia pyrifoliae DSM 12163, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 961957 28 100.0 32 ............................ TCGGCGCTGCCGCTGCTCAAACTCGCCGTGCT 962017 28 100.0 32 ............................ ACCATCACTGACAGCGAAGCCCGGAATAAACC 962077 28 96.4 32 C........................... AGTCCCGGCACCACCTCAGCGCCCAGCCCTGT 962137 28 100.0 32 ............................ AGCTAGAGGGGGTAAATAGCGTGGACTACAGC 962197 28 100.0 32 ............................ AAGTCGCGAACAGATTTCGGGGGGTTTTTGCA 962257 28 89.3 0 ...........C............TT.. | ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGATTTAAGCGCACTACAGCAAAGCGGCTGGAATAAGTGTCTTAGGGATTATATCGCCTGTAGCGATATCGCCCCGGTTCCGAAGGGGGCGGCGTGGCGCACCGTCCGGCGCGTCCAGGTGAAAAGTAGCGCTGAACGCCTGCGCCGCCGTTCGGTAAATAAAGGCTGGCTAAGCGAACAGGAAGCCGCAGAGCGAATCAGCGTACTCAACGAGCAGCGCAGTAATTTGCCGTTTTTGCAGATAAAGAGTGGTTCTAATGGTCAGGCCTGGCGGCTGTTTATTGAACATGGCTCGCTGGTATCTGCCCCCAGCGATGGCAGCTTTAGTTCCTATGGGTTAAGCGCCGCTGCTACCATCCCCTGGTTTTGACCCTTTTTTTTCGGCTAACGCTAACCTGTTGATTTCAGGTGGCGTTAGCATAGCGGTTTAAAAAAGGGTTTTACTGCGCATTTTAGGTTTTTAACTTGTTTTATAGCGAGTTAGTCTGCTTTACTAACG # Right flank : AGGATTCAATAACCCATTCCCTTGCCTGAGTGTATGCTATGCACCACGGGCTTCTCGTTAAATGCACATTATGCTGACAGGCAGAAAATATGTTATCCGTGGCGCATCTCTGGCAGCGCCAGCTGTTCCATCGGTGCGCCTGACCTTACCTGTGCAGTGCAGTCTCACCGCCGTTGTATGCGGAAATTATTAAGACGGTTGTTTCACGGCAGTTAAATCAGCTGAATGTAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGCATTTTTATCGCGGGTTTTTTCACGGTTTTTTTACAACTCATTAAGAATAATCTTATATATATTTTGTGCTCATCATTTCGGTGTTGAGGTTGTTTTTAGATTTTTTCGATCAATAATTTCCGGAATTTTCACTTGGAGTTGGCCATTTTTTTTTCTTCTTTTTCTTCGATAGTAGCTTCGCCGGTAGTGCAATTGCCGTTTTTTGATTTGAATGAAATGCAAAGTTAAACTA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //