Array 1 507-121 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDD010000156.1 Flavobacterium psychrophilum strain 96233 contig00156, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ============================ ================== 506 41 100.0 28 ......................................... TCTGCAAAAGCCTCATCTCCAATAGTAG 437 41 100.0 28 ......................................... CTGAAAAAAGCACCATTTTCAATATCAG 368 41 100.0 28 ......................................... TCTGCAAAAGCATTCTCTCGAATAGTAG 299 41 97.6 28 .................................T....... CCGCCAAAAGCACCTCGATTAATAGTAA 230 41 97.6 28 ....................................G.... TCTGCAAAAACATAATCTCCAATAGTAG 161 41 78.0 0 ................G..G..C.........TT.TTG..T | ========== ====== ====== ====== ========================================= ============================ ================== 6 41 95.5 28 TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAA # Left flank : | # Right flank : TTGTATAAAAGCAGATTCTCCAATAGCAGTCACAATATAGTTTTTTGAATTATAAGCTACTGTTTCTGGTATTACCGCAACTCCACTAAAATCAGGGTTTCTAGCTACCTTAGCAGTAAAG # Questionable array : NO Score: 2.64 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 31962-32616 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDD010000032.1 Flavobacterium psychrophilum strain 96233 contig00032, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 31962 46 91.3 30 T.G..T...G.................................... TAACTTAAAATAAATAAACGCCATGACACA 32038 46 97.8 30 ..........................................T... TCACGATCTAATGACGAAAACAATACAAGT 32114 46 100.0 30 .............................................. CCAAAATGGTTGTATGATTCTGAACTAATA 32190 46 100.0 30 .............................................. CAGTAGGAAAAAAAACAATTGATGAGTATT 32266 46 100.0 30 .............................................. TTCAAATTTACATGCACTTAACAGGTTTCA 32342 46 100.0 30 .............................................. AGACCCCTGTAAACGATTGTTTAGATATTA 32418 46 100.0 30 .............................................. ACACAGCTGAAGCACTTGACGAAATGATGC 32494 46 100.0 30 .............................................. CGTTGTTGGTTTGCGACTCTTGCGGATTTG 32570 46 93.5 0 .......................................G...T.T | A [32612] ========== ====== ====== ====== ============================================== ============================== ================== 9 46 98.1 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : TAAAAATGGCATGTTTTGGTGGTTCTTCTAATGTTTTCAAAAAAGCATTAAATGCTGCAGATGATAACATGTGAACCTCATCGATAATATAAACTTTATATTGTCCCGTTTGTGGGGGGATACGAACTTGATCGATTAGATTACGAATATCATCGACCGAATTGTTTGAAGCCGCATCGAGTTCGAAAACATTGAAAGCAAAATCTTCGTTCGGGTCGTCGTAACCTGGTTGGTTTATTTTTCTGGCTAAAATTCTGGCACAAGTTGTTTTTCCTACGCCACGAGGACCAGTAAATAATAGGGCTGATGCCAAATGATTTGTTTCTATCGCATTTAGTAACGTATTGGTAATGGCTTGCTGCCCCACCACGTCTTTAAACGTTTGCGGACGATATTTACGAGCCGATACTACAAATTGTTCCATAAAAAAATATTCGAAAGCAAATATAATGGTAATAAGTGAAAATGCAAAAGTGAAAAGTGAAAAGTTTTAAAATGTT # Right flank : CCCGCAAAGTGTGTAAGTTAAAAAGTTAGGCTTGAATTTTATAATCTGAGCCTTTTGTCAAATATAAGATTAAATTGATTTAAAACAATACCCCAATTTTGTATTGGCATTGACCATTTTTTTGTTGCTTCTTTTAAAGCTAAATA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 161-3544 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDD010000047.1 Flavobacterium psychrophilum strain 96233 contig00047, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 161 46 100.0 31 .............................................. TTACTCTGAATAAGGTTGTTTTGATGGCGTG 238 46 100.0 30 .............................................. TTTACAGACGAAAAGGATAGTGCATTACTA 314 46 100.0 30 .............................................. AGATTATTTTGATTACATCAACGAAATTAA 390 46 100.0 30 .............................................. GCTCTACAATTCCAGCATCATATAGTTCAA 466 46 100.0 30 .............................................. TGGCGGAATTAAAAGACCAAATGGGTTTCG 542 46 100.0 30 .............................................. ATAATTTTTTCAAAAGAAACTCAAGAAATT 618 46 100.0 30 .............................................. GCCATCTTTTTTTTATTAAAACCCGCCTAG 694 46 100.0 29 .............................................. TGAATTTAAAAAAGGATACAATTGGGCTT 769 46 100.0 29 .............................................. TTGGAATTTTATCGAATAATAAAGAAATT 844 46 100.0 29 .............................................. AACAAATTCCTTAAATGATGAGTTTCCAA 919 46 100.0 29 .............................................. AGGCAAAATAACTGGGTAAACCAACGAGC 994 46 100.0 30 .............................................. AAATTGCAGAATTACAAGCAGTAATAGACG 1070 46 100.0 30 .............................................. CTGCTGGTATGGCGTTATTTGGCGACCAAT 1146 46 100.0 30 .............................................. TTTTTGCGCTTACCTGTTTCTCATAGCCAT 1222 46 100.0 30 .............................................. CTTATGAGAATACAAAACAATATTCAACAT 1298 46 100.0 30 .............................................. AATTAAAAGAGACCGCATTGGCACCGTGCC 1374 46 100.0 30 .............................................. AAATTGAATTAGAAAACACCGAAAAAACAG 1450 46 100.0 30 .............................................. GTATCGTGTTAAAAGCAGTTGCGATTATTG 1526 46 100.0 29 .............................................. CATCTGTCAATAACTTGTTGAATGCAAAC 1601 46 100.0 30 .............................................. TGCCGTTGTTTCGGGTTGCCGTCCCTTTTT 1677 46 100.0 30 .............................................. ACGATGCTGATAGAGTAGCGAAGCAATACT 1753 46 100.0 30 .............................................. TCAGGTATTCGGACAAGATTATAGCGTTAG 1829 46 100.0 30 .............................................. GCAAACACGAAGGAATACTTTGCAAACTAC 1905 46 100.0 29 .............................................. ATGTTTAGCCAAATAGATGAAGAAGATGG 1980 46 100.0 30 .............................................. TTGAAAAATATTACGATGAAAGATTCCTTG 2056 46 100.0 31 .............................................. TTGCGATTTTCTGCGATGATTTCAGCATCTT 2133 46 100.0 30 .............................................. AAAAAGAAAAGATTTGACATACACGATGGA 2209 46 100.0 30 .............................................. AGTTACTGCTCCAATTTTCATTGACAACAG 2285 46 100.0 30 .............................................. CGCTGTTTTCTGAAAGCCATCTTCTTACCA 2361 46 100.0 30 .............................................. TTATTGGCAAGTATTACATTATGGGTTCAA 2437 46 100.0 30 .............................................. CAATAATCTTTTTTAATATATTCATTTACT 2513 46 100.0 30 .............................................. CACTATCGAATAACTCTTTATGAGAATCGC 2589 46 100.0 29 .............................................. TAGATGATGATAGCGAGCTATGTCCTTGG 2664 46 100.0 29 .............................................. AATACACCTAATAAATTAAGTAACCAAGT 2739 46 100.0 30 .............................................. TGCGAATCTCTTGGGAGCTACCTACAGAAT 2815 46 100.0 30 .............................................. GAGAAAAACTAGCATACGAGATTAGAGATG 2891 46 100.0 30 .............................................. CTAAATCTGTTCGTATATCGTCAAATGATA 2967 46 100.0 30 .............................................. AAGAAGACAAGGCAATGAAAGAAATACTAA 3043 46 100.0 29 .............................................. ATAACAGATGGCGCACCATTAATCTACAC 3118 46 100.0 30 .............................................. ACAAAAGTGAATTACTTACTAATTCAACAT 3194 46 100.0 30 .............................................. AAGCTTTAAAAGAGGAAGAATCTAAACTTG 3270 46 100.0 30 .............................................. CTTTCAATCCAGTAGATGAGTTGTGTTTTA 3346 46 100.0 30 .............................................. TTGATGCTCATCTGCCAGATTACTATGTAG 3422 46 100.0 31 .............................................. TGGGCCATAAAATCAAAAGTTGTCAATTTCG 3499 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =============================== ================== 45 46 100.0 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : AAATATATAAAATGTTAAAAAGTTATTTCCGAAAATTTTTGAGCTTTTTGAATTAGCTCAAATTTTCAGAATAACTTTTTAACTTACACACTTTGTGTTATACTGCCTATTTTAGCTTATAATTACCAACCAAAAAAAGATATATCTTGTTCAGGTAATGG # Right flank : CATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGCTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTGTGTACTTCGGCATTTTCTCTGCTGGCACAAAACCGCATATAGATCGAAAATTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTGGGCAGGTCAAAAAATACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 3959-3432 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDD010000068.1 Flavobacterium psychrophilum strain 96233 contig00068, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== =========================== ================== 3958 41 97.6 27 -......................................... ATCTGCAAAAGCCTCATCTCCAATAGT 3890 42 100.0 27 .......................................... CTCTGCAAAAGCCTCATCTCCAATAGC 3821 42 97.6 27 ............................A............. GCCTGCAAAAATACCCCTTCTAATAAC 3752 42 100.0 27 .......................................... ACTGAAAAAAGCACCATTTTCAATATC 3683 42 97.6 27 ............................A............. AGCTGAAAAAACACCCCTTCTAATAGT 3614 42 92.9 27 ...T...................T....A............. GCCTGCAAAAGACCCTTCTCCGATAGT 3545 42 97.6 27 ................................G......... TCTATCAAAAGCAGCATCTCCGATAGA 3476 42 81.0 0 T..A..G.T......G.......T..........TT...... | TTG [3462] ========== ====== ====== ====== ========================================== =========================== ================== 8 42 95.5 27 AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : | # Right flank : AAGCGCAAAAGCATTCTTTCCGATAGATCTAACGAAATTCCCAACGTTAACCGACGTTAAACCTTGACAGGAAAAAAACGCAGATTCTCCAATAGCAGTCACAATATAGTTTTCTGAATTATAAGCTACTGTTTCTGGTATTACCGCAACTCCACTAAAATCAGGGTTTCTAGCCACCTTAGCAGTAAAGGGAGCTTCTGAAGAAGTAATGGTATATCTTATATGGTTTGCTGTAAAATCTTGTGCTATTCCTAAAAAAGGAATTAAAATGACAAATAATAATTTTTTCATGTTTTTTGTTTTTAATTATTGTATAATAATTGTTTTTGTTGCCTTACCTTGGTTTGTCATTACTTCTACAAAGTAATTTCCTTTTGCAAAGCTTGAAACATTTATTTCTGAATGATTAGTTGTTTTTATTAACTGCCCTAATGTGTTGTAAAAATTCACTTTTTCTAATTGTAAGCCCTCTTGTAAGGTTATGTTTAAAATTTCTGAAA # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.12, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : AGTCACAGAATTAGGAATTGTAACTGATATTAAACCAGAACA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //