Array 1 1560-131 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIDN01000759.1 Klebsiella pneumoniae strain D37 NODE_759_length_1606_cov_2.73158, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1559 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 1498 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 1437 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 1376 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 1315 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 1254 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 1193 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 1132 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 1071 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 1010 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 949 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 888 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 827 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 766 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 705 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 644 29 96.6 32 .....A....................... GAATATAAAACCAGATTCCATATAGCCCTGTG 583 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 522 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 461 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 400 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 339 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 278 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 217 29 100.0 29 ............................. GGGGTCACTTGGGTGAAACTGAACTAACT 159 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGAGGGGATAAACCGTTAATACCAGGGGGCAGGTTCAGCAGGTCCC # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 959-15 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIDN01000872.1 Klebsiella pneumoniae strain D37 NODE_872_length_959_cov_3.13462, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 958 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 897 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 836 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 775 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 714 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 653 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 592 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 531 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 470 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 409 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 348 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 287 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 226 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 165 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 104 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 43 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTATACAGTATTATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [18.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 660-21 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIDN01000938.1 Klebsiella pneumoniae strain D37 NODE_938_length_688_cov_4.82531, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 659 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 598 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 537 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 476 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 415 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 354 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 293 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 232 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 171 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 110 29 100.0 32 ............................. GACCTGTCATGACGGAAATAGCGGTTATAAAC 49 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGCTGGGTTTTGTCGACTCTGCCGATCC # Right flank : GTCGACGCCCCGGTGTGGGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [10.0-18.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //