Array 1 1063577-1064108 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LR134490.1 Haemophilus influenzae strain NCTC11873 chromosome 1, complete sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                       	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	======================================	===================================	==================
   1063577	    38	 100.0	    33	......................................	AACTTTACGCAAACGGTGTCTTTTGATAATTCA  	
   1063648	    38	 100.0	    35	......................................	ATTGGAATGTTATCTTCAATAACAAAATTTGAATG	
   1063721	    38	 100.0	    32	......................................	GTTACTGTATCTAATACATCATCAAAGTTAAA   	
   1063791	    38	 100.0	    33	......................................	CCATAGTACTTACTGCACTTTCAACTAAAGACT  	
   1063862	    38	  97.4	    30	T.....................................	GACTGTTTCTGTTGCAATCCACGATCACAC     	
   1063930	    38	 100.0	    31	......................................	TTGAAGTCATTTAAAATAAACATCACTTGTT    	
   1063999	    38	  97.4	    34	T.....................................	ACGGCAAAATAAGCCGTCATCCCCACATCACTAC 	
   1064071	    38	  94.7	     0	G..................................A..	|                                  	
==========	======	======	======	======================================	===================================	==================
         8	    38	  98.7	    33	AGTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC	                                   	       

# Left flank :   TTAAATTCTAGGAAGAAAAAAATGGCACAATATTTAATTGGTTACGATATTTCCGATCCTAAACGACTACAACGGATTTATCGTCGAATGACAAATTATGCGACCCCCATTCAATATAGTGTATTTATTTTGGATGACACAGAAAAACTACTTAAGCAATGTTTAGCAGAGATTATGTTAATTTTCCACAAAAAGGAAGATGATTTGCGCGTCTATCCCTTACCAGCCAATGCGGCTCAATGGCGACTAGGTAAATCAAGTTTACCTGATGGGATTTACTGGACGGCCTTGCCTACAGCCTTAACCTTATAAAATGCTACTGGAGTATTTCACAAACTTTGCTAAAATATACCGCACTTTTGGCTGAGTTTTGAAAAAAATAAGAATGATAAAAATTGTTCAATATTTAATCAAATCAATACCCAACTATTCAAACATCAGAAAAAGTTGGGAAGTGGCTCTGGGAAGCCTTGCCACACAAGGCTCTAACACCCCACTGC
# Right flank :  CTCATGGTCTTCAGGAATGTCTTTGTTCACGATAGGTCGAAAGACATCGACTGCCTAAAAGGGATGTACATCGCTAAAGTGCGGTTAGTTTTCAATATAAATTGGAAATCGACCGCACTTTTTATTTCCTTTCATTTTTACAAATTTGTATTTTCGCCTTTCTATTTATGACTTTTCTATAATTCACTCCGTTAGTAATTGATTTTTAGCTCAGAGGATTGAGCGCTAATTTAGTTTGTTAAAAATCTATAAAGAGAAAATAGAGAATTAAGCAATTATTGGCATATAAAACAATTGTTCTAATTTAAAAATGTGAGGGAATTAAAATGGCTGGAATTAATAAAGTAATTATTATTGGTAATTTAGGGAATGCACCAGAAATTCGAGCGATGCAAAATGGTGATACGGTTGCTAATTTTAGTGTGGCGACATCTGAAAGCTGGGTGGATAAAAATACACAGGAAAAACGTGAAAATACCGAATGGCATCGTATTGTGCTT

# Questionable array : NO	 Score: 3.20
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     AGTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC
# Alternate repeat :   TGTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:52.63%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-5.50,-3.30] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-4] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.78,0.27   Confidence: MEDIUM] 

# Array family : NA
//