Array 1 207111-207322 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINAA010000075.1 Escherichia ruysiae strain C15-8 c_000000000075, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 207111 29 100.0 32 ............................. GAGGCCGAAAAACATGAGCATCATGAACTCAA 207172 29 100.0 32 ............................. CTTTGCACAACGGCACCCTGAGTGGATTGTTA 207233 29 100.0 32 ............................. GGGCAGATCGCCCGCCGCGATACGCTGGCAGA 207294 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGTTGGCGACGCTGACCGATGATAAACCGCGAGTAATTGCCCTTCAGCCGATTAGCCAGAAGGATGATGCCACGCGTTTGTGTATTGAAACCTGCATTGCGCGGAACTGGCGTTTGTCGATGCAAACGCATAAATATTTGAATATTGCCTGATTAAACATTTATAAGCGTTGAAAATGAGTGGAACCTGTAAATAACTCCACTCATTTATATTCTTTGTCGCCTCTGAAACTACTCCATTTTGCCCATCCTGGACTAATCATTACCATTCTCTACAAATGCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTGAAGTTTGGTAGATTTTAGTTTTTATAGATTTATTTTAAATATTTACCTTTTCAGTCAATGGATTAAGTGCTCTTTAACATAGTAGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GCATCACCCGTCCTCTATTTCCCATATTATTTTTCGTTCCCTGTATCAGCAATAAACAACATATCCAGGTAGTTCAAAATAACTCTCTACCCCCGAGAATTTCACACTTATCAACACAAAAAACTCAATTTTAATTAAACTGGCATTTGTATAATTACTTAAACTATTAAAACCTTCTACTATCTTGTTTCATTTTCAGCAATATATCCGGCTATTAATTAATTTTTCAGAATAAAACTAAAGAAGAGTTTGATTTTTGAACTTATTGTTCATTGATTAAGGAATGAATCAGTATAATTTGCGGTTGTTTTTTGAGGTTAATTAGTAGTTTTGCATAACCCATTTTATGCACTATTGATAAATAGTTCTTATGGGTAAAGATATTCAGTTCATACTTTAAGTGAGAATTGATAAAGTACGATTCGCGTTGTCCTTTATTCTAAGGATATCGATTGCAGTTAATATTCCTTGTAAAAACAGGGATAAACCGGACTTGTTCT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.90,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 333548-335201 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINAA010000022.1 Escherichia ruysiae strain C15-8 c_000000000022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 333548 28 100.0 32 ............................ AAATTGCTTCCGACCATAAAAAACAACTAGAG 333608 28 100.0 33 ............................ ATTAATATGGGCGCTCGGGTCATTGCGTTTTCT 333669 28 100.0 32 ............................ ACGAATAAAACCCCGTCCAGTCTGCGCGGTCT 333729 28 100.0 32 ............................ GCATCAGACTGATTGCCGCCCAGCACCAGCAA 333789 28 100.0 32 ............................ TGCTCGCGGCGCTCTTTGCGCTCCAGCTCTGT 333849 28 100.0 32 ............................ TCATGCCCAGATGAGACAATCTTCAGAAAATC 333909 28 100.0 33 ............................ TTTGCGCTGCGGCACAGGTTGCGGAGAAATAAT 333970 28 100.0 32 ............................ GCAGATATCTCTATTGCTAAACTACCTGTTCG 334030 28 100.0 32 ............................ GCAGATATCTCTATTGCTAAACTACCTGTTCG 334090 28 100.0 33 ............................ AGTTCGGGCCGAACAGCTCAAGGCCGATTTTTT 334151 28 100.0 32 ............................ GACAATGGGCGAGGAGCGCCGGGATCTGATCG 334211 28 96.4 32 ...............A............ TTAACAGGGCTATTTTTATTTACATTATGTGA 334271 28 100.0 32 ............................ TTAACAGGGCTATTTTTATTTACATTATGTGA 334331 28 100.0 32 ............................ GGCGAACGCTGCACACCACGGCGTTTCATCAT 334391 28 100.0 32 ............................ CCGCGCGAACTGGTCGCGCAGCCGTGCGAGAT 334451 28 100.0 32 ............................ GTCATACGTGTAAACAGTATCGCTACCCGGAT 334511 28 100.0 32 ............................ GCGATGGGCGTCCACGAACCACCTGGGCGCAC 334571 28 100.0 33 ............................ TCAATAATATTATCAATATAAAATATTCGGTAT 334632 28 100.0 32 ............................ GATCAATGCGGCGCTGATTTCTCGCTGCGCCG 334692 28 100.0 32 ............................ AGGTCTGTAGCGTCCTTGTAATCTCTCGCTTT 334752 28 100.0 32 ............................ ATGATCAGCTGGCGCGGAAAGGATGCGGATAA 334812 28 100.0 32 ............................ ACCAAACTGTGCGGCAGCTTTGCGGGAGATGT 334872 28 100.0 32 ............................ ACCAGAATTAATAATTTTTTCATCATTACGCC 334932 28 100.0 32 ............................ GGATACGTTCATTTCGAAACGGTGAACGGCCT 334992 28 100.0 32 ............................ AAGATAAGAGGCAAAGCGTTCAGTGGCATCAT 335052 28 100.0 33 ............................ ACCGAAACAGCCATGACCTGGCTTAAAGATCAT 335113 28 96.4 32 ...............A............ GCGAACGTCAAAAAGAACTGGTGGCAGCAGGC 335173 28 85.7 0 ...........A........T...C..T | C [335196] ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTTGCAGGTTCAACTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGTCAGGAAGCGCGTAACTGGCTGGCTGAGAAAGGTTATGACCGGGCAATGGGTGCACGTCCGATGGCGCGTGTCATTCAGGACAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGTTGGTGGACGGCGGCCAGGTCACCGTTGCACTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCGCAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATGGTGTAAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCCTGTATGGGGTTACGGACTTTTTTCTTTGTGAGGTGAGGGCGGTTGTAACCCTAATTTTTATGGTTACTGTAACTTATTGATAATTAATGCTGCTGGAAGGTAAGGATAAAAAAGGGTAGCAGCAGGGAAATTAGATAGTTTTACTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAATGGTAGACGTTTGGTCATATCATGACGCTCTCAACTTCAAAACATTAGTCTTAGCACACAATAACAATTGTAATAATTGCGACAGAAATCAATTTCCTGCACAGAAATCAATGTTGTACTAATCCTAACGCCTTCAAACAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGACCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGGGGGCGGGTGGAGTATGTTACCAGTGAAGGTAAGGAGTCGTACTACTGGAATATCCCTATTGCGAATACCACGGCATTAATGTTGGGGATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCGGGGGTGATGGTAGGATTTTGTGGTACGGATGGCACACCGCTTTACTCCGCCAATGAAGTAGATGTTGATGTCTCCTGGCTCAGCCCACAAAGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 344381-345249 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINAA010000022.1 Escherichia ruysiae strain C15-8 c_000000000022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 344381 28 100.0 32 ............................ TTGTATGAATCAGCCAGGATTTCGTAGGGTTT 344441 28 100.0 32 ............................ GGCGCGGGAGTGCTTGATTTCGTATACGTCAT 344501 28 100.0 32 ............................ CACAGTTCGAAACCCACGTTTGCTGTTACGAG 344561 28 100.0 32 ............................ TTGCGCGAGGAATACGAATATCTGGACGGCAC 344621 28 100.0 32 ............................ GAATTTTGGTGCAACAGCACCGGCCACCGGCG 344681 28 100.0 32 ............................ GTTCCGCAGCATTTTATAAACTACGCCTCATT 344741 28 100.0 32 ............................ TCGCGCGACGTCATTAGCTCCCTCCGAGCATT 344801 28 100.0 32 ............................ GCGTCCTGTGCGCATCGCTTCAGCTTCCATGA 344861 28 100.0 32 ............................ TGCGGCCCGGCCTCATCACTCTGTGCTACCTC 344921 28 100.0 32 ............................ ATTGTTAAGAATCCTGAATAAACTTATTAATT 344981 28 100.0 33 ............................ CGTCCGCCATTTTCGCCTGTCGCGCGGCAATGG 345042 28 100.0 32 ............................ ACCTCAATACTCAAACAGGGATCGTTTCGCAG 345102 28 96.4 33 .............T.............. AGAATGCTGGCACTTAATCCAACAGGAAATCTT 345163 28 96.4 32 .........T.................. GCTAACGCGGAGATACGCCCCGGCTGCGGGTG 345223 27 89.3 0 ...........C........-...T... | ========== ====== ====== ====== ============================ ================================= ================== 15 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAACTGAGAGGTATACGAAGCCATCTATATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGTTGCCTGACCTCATGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAAAATTTATTTAGATTGGTTTGTTTGGTTATGCATTGTTCACGCAGTTCATCCGACCAGGATTGTGACTGTATATGCTCTGGGCAATTATTTATCAAAAGCTACGCTGGAAATATGAGATTGAAGACATTCCAATCGACCCTTTTTTCAGGGTGAGATGTAACGCATTGATTTTATTTATTACTATTTTGATGCCTCGAAAAAGGGTATGAATTGGGGATTTTGTAAGTTTTAACAGTAAATCAATAGGATAGTCTGCTATTATTCCA # Right flank : AATCCATAACCCCATATTTATTTTCTTCCTTAACTCCAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGCAACGTTTCAAGAACGGTGCCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAGATAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //