Array 1 3153935-3153679 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060395.1 Synechococcus sp. CBW1108 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 3153934 35 100.0 39 ................................... CGCCGCCATCATGAGGAGAAGACTATTTTTCATCTTCCG 3153860 35 100.0 39 ................................... CGCCCCCATCATGAGGAGAAGACTATTTTTCATCTTCCG 3153786 35 100.0 38 ................................... CTAGCCTCCTTCGAAACCGTAGCCACCATGGGCCCCCG 3153713 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================= ================== 4 35 100.0 39 GTCACCACTCGTTGGTGACACCTATTGATTGGAAA # Left flank : TGGCCAAGTTGCTGGAGGGCTATGGGGTGCGCATGCAGTGGAGCGTGTTCGAGTGCCGGCTGCGGCCCCACCAGATGCAGCGCCTCAGGCATGGCCTGGAGCGCATCGCCGAGCCGGCCGACAGCATCAGGCTCTGGTCGCTGCCGCAGCGGGCTGTGGCAGCTGAGCAGATGGGCCGGGATGTGGAGGTGACGGTCTGGCAGGACAAGGTGATCTGACCAGGTTCCCGAGCGTTGTCTCGCGGTGTCGCTCTGGGGGTGCGCGTAGGACCTTCAGTGCAGAACGACTGGCTTCAGAGGCTTGGTCCCTTTCGATCCGCCGCGCACCCCCCGGCGATCGGCCGAAACCCCAGTGTTTGTGTCCTCCTGCGCGCTGCCCTGCGGCGCAGGGGATCTCAGCGTTTTCCACAGGCTTGACGCCACGGCCAGCCGCGGCCAAAGTAGGGAGGTGCGCAAACGGTCTCCGGATCGCCTGCCGCGCAGGCCCTCTCGGGGGCCGCT # Right flank : CTGGGCTCACAAGGGATTCATAAGCACTTAAGGGAACCTCGAAAAACCAAGAATCATACACCTACAGAAGCTTACAAAAAAACGCCTTGCGGCGCCAAATGGTCTAATAAATTGTACATCAAAATGACTGAATTGACTCAGGCGGCTACGTACTAATTATTACTCATGCGAGTGCAAGCCCACGATCCGCTCTTAGAAGATATCGCAGGAAGTTGAATGTCAGGTTCTTGAGAAGCACCGCCAGCTTTCGGGGTCGCTTACTGCAAGGGGTGTCGTAAGCCACCACCCACCGCATCACTCCACCCTCCTCAGCGTCGCTGTGGCACCGTGAGACCGCTGGCGGGGTCGTACACAAAGCGCACATAGGAGCGCACCAGCGCATCGAGCAATTCCCAGCGTGGTCCGCAGCGATCGTTCGCCAGTTGCACCTCCTCCGCCATATGCACCGCCCATGCCCCCATCCATTGGCGGCGCGTGACCGCGTTGAGAAAGACACCTCC # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCACTCGTTGGTGACACCTATTGATTGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 2 3190118-3190740 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060395.1 Synechococcus sp. CBW1108 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 3190118 36 100.0 35 .................................... TGATGGCTACCGCCATCATGAAAAGGAAAAGTTTA 3190189 36 100.0 40 .................................... CCTCCAGGGAAGGAGATGAGTTGGTTGGTGGTATTGCTGG 3190265 36 100.0 39 .................................... GTGGAGTTTCCTCCACCCTGGATGTGAACCCCACCAGTT 3190340 36 100.0 35 .................................... TGACCTGTCACTCCTGTGAAGGTTGACTGACAGTG 3190411 36 97.2 38 ............C....................... GACGGGAGCCGCGGCTCCGTTTGGACCCGGAGCACATG 3190485 36 97.2 35 ....T............................... GCCAATTGGGAGTTACCTATGGTGATTACCTGGTC 3190556 36 97.2 37 ..........................A......... CAAAGAGTCCAGTCCAAATCAGGACGAGTCCCGCAGA 3190629 36 94.4 39 ...............C..........A......... CCATCCGGACATGCCGTAATAACAAAGGGGTACGGTGCA 3190704 36 100.0 0 .................................... | C [3190738] ========== ====== ====== ====== ==================================== ======================================== ================== 9 36 98.4 37 GTCACCACTCGTTGGTGACACCTATTGATTGGAAAC # Left flank : TGGCCAAGTTGCTGGAGGGCTATGGGGTGCGCATGCAGTGGAGCGTGTTCGAGTGCCGGCTGCGGCCCCACCAGATGCAGCGCCTCAGGCATGGCCTGGAGCGCATCGCCGAGCCGGCCGACAGCATCAGGCTCTGGTCGCTGCCGCAGCGGGCTGTGGCAGCTGAGCAGATGGGCCGGGATGTGGAGGTGACGGTCTGGCAGGACAAGGTGATCTGACCAGGTTCCCGAGCGTTGTCTCGCGGTGTCGCTCTGGGGGTGCGCGTAGGACCTTCAGTGCAGAACGACTGGCTTCAGAGGCTTGGTCCCTTTCGATCCGCCGCGCACCCCCCGGCGATCGGCCGAAACCCCAGTGTTTGTGTCCTCCTGCGCGCTGCCCTGCGGCGCAGGGGATCTCAGCGTTTTCCACAGGCTTGACGCCACGGCCAGCCGCGGCCAAAGTAGGGAGGTGCGCAAACGGTCTCCGGATCGCCTGCCGCGCAGGCCCTCTCGGGGGCCGCT # Right flank : CATGTCCGATATTCATGGTCGGGGGATGGATGAATTAATCCAAATCCTGATCACAACAAAAATCACCTTGGATGAATTGACTGCTATTTTTACCAGTCAAAAAGAACCCATGACGAGAACTGAACTCGTCAGACGAGCTCTAGAGATAGACGTCGTCAGAGTTAATGTGAGAGTTGTGTATAAGGAACTAATCCATAAGTTCCCCGAAGAGTATTCCAAGCTACTCAACACACCTATCCCTTCCTAACCCTTATGATGGAAAATCTAGAGGCAATTCAGCTTCAGCTGCAAGATTTATCTTGTCGTCACCACTCGCTAGTGACACCTATTGATTGGAAACTGAGAACGAACTCCATAAATTGATTCACGAAAACAAATATAGTCACCACTTGTTGGTGACACCTATTGAGTGGAAACATGATCATTCCCTTAAGGGCGATGTTTACAATAATGTCACCACTCGTTGGTGACACCTATTGATTTTACGATCAGCCGCCACC # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCACTCGTTGGTGACACCTATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //