Array 1 678-100 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGNW01000017.1 Escherichia coli strain TUM15665, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 677 29 100.0 32 ............................. TCTGGGCCGGATTCGATCCCGCGCGTACCGGA 616 29 100.0 32 ............................. TACAATCCCGCATCGAAACTGAATACCCCGAT 555 29 100.0 32 ............................. TTGCCCAGGCTTTTGCGAAAATTTGTGATTTG 494 29 100.0 32 ............................. ACACGGGGCAGATTGAGCAGGACTGCGACCTC 433 29 100.0 32 ............................. GCAGCAGATTTACAAACAGATCGGAGATTACT 372 29 100.0 32 ............................. CGCGGCCTGCGCTCGCGTAAAATCAGTTGCAG 311 29 100.0 32 ............................. TCCGCGCAAGCCTATATAAACCAGATTGATCA 250 29 100.0 32 ............................. CGAAATCGCACGCGCTTCCCGCATGGGGGAAA 189 29 100.0 32 ............................. TGTAAAAGTCTTGGTTTTGGCGCATCATTTGT 128 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGATTGTGCATTGAAACCTGCATTGCTCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGATTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGCGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTCGGTATAGGATTACTTTAAATATTTAGCTTTTCAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAATATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25590-26655 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGNW01000004.1 Escherichia coli strain TUM15665, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25590 29 100.0 32 ............................. ATGATCCAGCGCGGCGGCTCATATGAAACTGG 25651 29 100.0 32 ............................. TGCGTGTCGGGCTGATTCGTCAGCTTCTTGGT 25712 29 100.0 32 ............................. AACGACGCACAGGATATAATGCTTGGCCTGGG 25773 29 100.0 32 ............................. TGACCGCCGATACGTTTGCTGGCGCGGCAGAA 25834 29 100.0 32 ............................. GTTACCGCGACTCATGCGACGATAAAAAATAC 25895 29 100.0 32 ............................. GTGCCGCGACTCACCAGATAGAAATAACGCAA 25956 29 100.0 32 ............................. GCTACCCCATTTGCACGCTGAGTTTGATTTCT 26017 29 100.0 32 ............................. GAGTAACCACGGTGGCAAAAATATCAGGGGTG 26078 29 100.0 32 ............................. CCACATCCAGCATTTGCTGAGGTGAAATCCAG 26139 29 100.0 32 ............................. TTAACTTCCTGCGTCTGCTTGGGGGAATGGCC 26200 29 100.0 32 ............................. TTAGCGTGTGATTTTCCGTGTTATAGGTTAGC 26261 29 100.0 32 ............................. GCGGGATTGTTCCGTTTGCCCGCGCCACCAGC 26322 29 100.0 32 ............................. GGGCCGACGGTCGCAGTGCTGGACCATTTCAA 26383 29 100.0 32 ............................. AAGGGGACGGCTACGGGACGCCGCCTATTGAC 26444 29 93.1 32 ............T......A......... GAAATAGCTTTTGCTGATCATCACGGTTTAAC 26505 29 100.0 32 ............................. TTTCGCGGTTGCGCAGAGCCGCCGCCGAGGCA 26566 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 26627 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCTATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACGCCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //