Array 1 307954-308782 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEWL01000005.1 Geobacillus uzenensis strain BGSC 92A1 contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 307954 30 100.0 36 .............................. CAATGACGAGCCGCCAACCACCCATCATTAGTCGCG 308020 30 100.0 35 .............................. TAGAATTCCTCCAAGCAAATGTAATCGTGCGCTTT 308085 30 100.0 38 .............................. ATGGATGAGGAAAGTTTGCAGCTGTCCCTTTTTGAAGA 308153 30 100.0 35 .............................. ACGGACATATTGACAGGGGTTCAAACGATTGCGGA 308218 30 100.0 38 .............................. TTTTACCAAGATACAACACATGAAAAAGGCATCCATTT 308286 30 100.0 37 .............................. ATCTCATATCTTCTTAAAGCTTTGCGAAACTCTTGAA 308353 30 100.0 35 .............................. TAGTTATGTTGAATCCCGATCATAGTGTCGATGAA 308418 30 100.0 38 .............................. TAGCGAAGAAAACACCGAAGCACAAAAAGCCGGACACG 308486 30 100.0 40 .............................. TTCGCGCCTGGCGACATCGTTTTGATTTACGACCCGTACG 308556 30 100.0 36 .............................. ATTCCCCCTTAATGAAATTGGCTTGCCAAAAACACC 308622 30 100.0 36 .............................. CAAGAAACCAAAGCACTCGCCCCGAAACGAACGGGC 308688 30 100.0 35 .............................. TACTCACTCGTACCGTTCCAATCGGACTGTTTCGG 308753 30 83.3 0 .C.........C..C..C..T......... | ========== ====== ====== ====== ============================== ======================================== ================== 13 30 98.7 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : AATCCGGCGCTGTCCGACGACATCATCCGCGTCGCCCGCTCGCCGATCCGCAAACTTGGACCGAACGACCGCCTCGTCGCGCCAGCCGTGCAATATTGCGCCTTATTCGGCAACGCCCCGCAAGGCTTGGCTAAAGGAATCGCCGCCCTCCTGCGGTTCGATGATGCCCGCGATGCGGAAGCCGCTGCCCTTCAACAAACAATCGCCCAGCACGGGATCGAAGGCGCGCTTCGGCAATATGCAGGCCTTGAGAGTGGGCACCCGCTTGTGGCGGCGGTGAAGGACGAGTACGGAAGAATGAAGAAAAACAAAAACTGACCGTCTTGCAAATGTCGTCGACCTCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATATTTTTTTGCGTCAAAATCCTACAACCAACACGGCTCAGCAGTATTGACAGAATTTTTGAAACGTGATATTCTGAAAACAGCTCAGAGAGAAAAAGCTTGATTTGATGCGTATGGTTTGGGG # Right flank : CACTGTGTAGTACGGCACAACTTTTTCTGTCCCCCATGCAGGATTTTCACCCCCTGTTTGCGAATGGATAGAATCGAACACGTTCAAAGAGGGGTGATCGAATGGCCATTGACCATGACCGATTGTTCAAAGAGCTGATTCAAACGTTCTTCGAAGAGTTTCTTCTCCTCTTTTTCCCCGACATCCACGAGCATATCGATTTCCGCCATTTGTCCTTTTTGTCCGAAGAACTGTTTACCGATGTCACGGCAGGCGAAAAATACCGCGTCGATCTATTGGTCGAGACGAAGCTGAAAGGGGAAGACGGGCTGATCATTGTTCATGTGGAGAATCAAAGCTACGTGCAACCATCGTTTCCAGAGCGCATGTTTATCTATTTCAGCCGTTTGTTTGAAAAATACCGCACCCGCATCGTTCCGATCGCTGTCTTCAGCTATGAGGCCCTTCGCGAGGAACCGTCCGTGTTCTCAATCGAGTTTCCCTTTGGCGACGTGCTGCAG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 316977-317815 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEWL01000005.1 Geobacillus uzenensis strain BGSC 92A1 contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 316977 30 100.0 35 .............................. TCTCCTTTTAGTGAAACATTGTGGCCGCTATATTG 317042 30 100.0 41 .............................. AAATTTTCCAATACTTTTAATGTACGGTTCAATTTTATCCA 317113 30 100.0 38 .............................. TGGAAGAACACAAAGAGAGAACACAAGAGCAACCGATC 317181 30 100.0 36 .............................. AAAAACGAAGTGAAACGGTTGACCGAACTGACAAAA 317247 30 100.0 35 .............................. GAAGACGCATATCGCTACTTGGCTAGAGTGCTTCC 317312 30 100.0 36 .............................. ACCCGTGACCGCGTCGATCACAACGCCTCGCGGCGC 317378 30 100.0 39 .............................. TTGACAACGACGATCATGTGATCGAATTTTACACACGGA 317447 30 100.0 39 .............................. CACTGGACGTAAATTCGGTTCGAGAGTGATTACAGTAGA 317516 30 100.0 39 .............................. AGTTCGTTTTTTCAAGACACGATGATATGCTGTGTCCTC 317585 30 100.0 36 .............................. TAGCCGGCGCCGGGATAGCCTTTCTTCCTCGCCTCC 317651 30 100.0 36 .............................. TCCCGATGGTCGTTATGGAATACGAGAACTTGCGTG 317717 30 100.0 39 .............................. AAAATCGTGTACCGATGGAACCCGTCAACGATGATGAAC 317786 30 90.0 0 ..............C......A.C...... | ========== ====== ====== ====== ============================== ========================================= ================== 13 30 99.2 38 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TGGGAGCGCAAATCGCCTACGCTCGGTTTACTGCCTTGCCGCCGCTTGTGTATGTGAGTGTGTTCGGGCGCTTGATATTGTCGCCGCTGTTGGCTGGGTCTTTGATCTTTCTATTAGGAATGGATGGCGTGACGGCTCAGGCATTGCTCATTGCCAGTTCGTATCCATGTTCACGCAATACGGCGCTGTATGCGCTCGAGTATGACTGCCACCCCGATTACGCCGCCCAGGCAGTGCTGGTGTCGACCTTGTTGAGCGCCATTACCGTGACAGGCACAGTATATGCGGCCCGTCTGCTGTTTCCGATTGGCGGATGAAAACGGGGGCAAGTTGTCGTCGACCTCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGTTTTTTTGCGTCAAACTCCTACAGCCAACGCGGCTAGACCGTATTGACAGAATTTTTGAAACGTGCTATTCTGAAAACAGCCAAAAGGGGAAAAGCTTGATTTTATGCGCATGGTTTTGG # Right flank : CTGTCTCCTGCCACAGCTGAACCACCGCTGAGTTCAGCTTGTTTTACCGCTCGACATAGGAAAAGGACAAATGCGAAATGGCACATGCCAAAAAAACGCGGGGGGAAACAAGAAGGAATTCGGCCGCGAAGGGCGAATACAGTACGGTGAATCCGACATTGCAGGGAGGGAAAACGTGGCGAAGAAGCGAATTGACCATGACCGGTTGTTCAAAGAGCTGCTGTCGACATTTTTTGAGGAGTTTTTGCTTCTTTTCTTTCCCGACGTGTACGAGTACATTGACGTTCACCATCTCTCTTTCCTCTCCGAGGAACTGTTCACCGATGTGACGGCCGGAGAGAAGCACCGCGTCGACTTGTTGGTCGAAACAAAGGTGAAAGGGGAAGACGGGCTCGTCATTGTCCATGTCGAGCATCAAAGCTACACCCAGCGGACCTTCCCCGAGCGAATGTTCCTCTACTTCAGCCGCTTGTTTCAAAAATACCGCCGCCGCATTCTCC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 145562-144739 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEWL01000009.1 Geobacillus uzenensis strain BGSC 92A1 contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 145561 30 100.0 38 .............................. TATGCTTGCGTTGTATTACCGACTTTTGGAGCATACAC 145493 30 100.0 36 .............................. AAACAGGCGTGCAGCAGTTCATGAACGAATGTTTGC 145427 30 100.0 36 .............................. GACTTTATTTGCTTTACATTTTCATCGTACTATGAA 145361 30 100.0 35 .............................. ACACCTAAATTCGGGATACCAATTGGATGAGAAGC 145296 30 100.0 37 .............................. TCCTTCTGCCGCTTCAAATACCCTTTCACCTTCTCAA 145229 30 100.0 36 .............................. AACGTCCCGATCATCGTCCTGGCGCAGCTCAACCGG 145163 30 100.0 35 .............................. GAACATCTTTTCAGAGCATAAGAAAACGCCTGTCG 145098 30 100.0 35 .............................. TCGAACTCTACTGCCTCCCGCCACTCGCTAGGAAA 145033 30 100.0 35 .............................. ATGATACGGACATGCACATCATAGTTCGGCGCATT 144968 30 100.0 34 .............................. TACCACAGCGATAATCTCAAGGGAACTATGATCG 144904 30 96.7 38 ........T..................... TGATGATCAGAAACTCGAGTCGTTGCAGTCGGTTTTTG 144836 30 90.0 38 ................C..C.....A.... ATAACTCAAACCCCAAGCTGCCTTCTTTGGCTTTGGCT 144768 30 83.3 0 .................A.C.A..GA.... | ========== ====== ====== ====== ============================== ====================================== ================== 13 30 97.7 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TATGAAACGATCGATGGCAAAAAGAAAACGCATTTTTTCGGGCCGGACGACGACGTCTTTCCCCACCTCGTGGAGCTGAATTTCCGCCATAAATACGAAGCGTACTATGGCGTCGAGCCAGCAGAGAGATTGGTGATCCAGCCTGTCCATGTCCACCACCGTCATCGAGTGGTAACACGATTCAAAGATATGTATATTACGGGCTGGTTAGGCCATTATCGTCTTTCCTCTTCTCCCGAACAACTGACGTTTCTATACCACGTTGGCCTAGGCAGCCGCAATTCCCAAGGATTCGGCATGTTTCGGTTAATCAGCGAGTGAGCCATTCTGATTGTCGTCGACCTCCAATCGTGCAAAAACCCTAGGGGGTCGACGACATTGGTTTTGATCGCCTGATCCCTACAGCCATCATGGTTGAACTTGATTGACAGAATCTTCGAAACGTGTTATTCTGATGATGACGTTGAAGGGAAAAGGTTGATATGACAACACTTTTTGGG # Right flank : CGACACCTACGTTTGCTCATCCAACCGGTTTCTTTGTAAACATTTGTGATGAAAAGAACGGAACTCCCTTTTTTGTGCATCACGGTTTTATAAATTTTTGGTTTTTCTATTTTAAGGTTAGAGAGCTAACCACCGCGACAGGAGGCTTCACATCGATGCGCCAAAAACTTCGCGATCTCGGGTTTTCGATCGGCACGCTTCCGACAGGGAAGCGGAATCAAATTACGGATGTGTCCGGCGTTCGGGTCGGGCATGTGACGATTCGTGAAGAGCGGGATGAACGGACGGTGGTCCGCACTGGGGTGACGGCGGTGTTGCCGCATGGGGGGAATTGGTTTTTAGAGAAGGTGCCGGCGGCGTGCTTTGTCCTGAACGGGTTCGGGAAAACCGCGGGACTTGTGCAAGTCGAGGAGCTGGGGACGATCGAGTCGCCGATTATGCTGACCAATACGTTCAGTGTCGGCGCTGTCTGGCAAGGGACGCTTGAGTATATGCTTGCG # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 163968-163077 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEWL01000009.1 Geobacillus uzenensis strain BGSC 92A1 contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 163967 30 100.0 38 .............................. GCCACGTTTCTGCATTGAGCAATTCAATGAGTTTGTCG 163899 30 100.0 37 .............................. CGTACATTTGATACCGAATATGTAGACGTTGACATTG 163832 30 100.0 36 .............................. ACCTCATCATGTTCAGTTATATAAACATATCCGTTC 163766 30 100.0 36 .............................. ACCTACATGTTTGACGCTCAAATACAAAGATACTAC 163700 30 100.0 36 .............................. CTTCACCGAATACAAACGCTTCATCGTCGCGCAATT 163634 30 100.0 36 .............................. CCGTATGGATTGACAGCTATGGCGGCAGTGTATTCG 163568 30 100.0 35 .............................. CTTCACCGAATACAAACGCTTCATCGTCGCGCAAT 163503 30 100.0 35 .............................. CCTTTATCCTCCGTCCGAGACGGTCGGGCGGAGTG 163438 30 100.0 35 .............................. AACATCTATATCAACAGTGGCGGCGGATCCGTCTT 163373 30 100.0 37 .............................. ATTGCCTCTTTCACTAAAGCAGGTGATAGGGTTTGGC 163306 30 100.0 38 .............................. AAGAACCTTGCTTCGTTCGCCAGCTCCCCAAGCTCCAC 163238 30 100.0 36 .............................. GCCTCGTCCGCAAAACAACGCTCACCGCAACACCTC 163172 30 100.0 36 .............................. GCAGCCCAGCTTGCGGCACTCCTAGTTGAGTGCGCA 163106 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 14 30 100.0 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : ATGCGGCTTGAACAGCGGAAAAAAGAGCAGGCATTGCTGGAACAGCGGAAGCGCGAGGAAGAAGAGCAAGCAAAACTTGCCCTGCTTTCCCCAGAAGAACGGCTTGTCGCTGAAATCGAGCAGCTCACCGACAGCCAAGCCGATCAGCAGCGCAGCAAAGACATCCTATATAGTCAAGTCATCCAACAACAAAACAAACAGGCCGCTCAAGCGCTGCTTGCGTATTGGCAACGGATCGGCCAATGGGAAAAAAGCGCCAGCAAAAAGCAAAAAGAAAAAATCAACGTCATTCAACAGCTGCTTAACGGCTCATAACCAAACCGCCTTTCGTTTGTCGTCGACCTCCAATCACGCAAAAACCCCAGGGGGTCGACGACATTGGTTTTGATCGCCTGATCCCTACAGCCATCAAGGATAGACTTGATTGACAGAATCTTCGAAACGTGTTATTCTGATGATGACGTTGAAGGGAAAAGGTTGATATGACAACACTTTTTGGG # Right flank : TTCGGCAGATGATCAAAGAAGGCCTGGAATCCGGGATTAGATTCGGCACAGCGAACCGGGAAATCTGCTTGTGTCTACTATATACATGCAACATAAAGAGTTAACTTCTCATCCTGCACACCCTAAGCGTTGCAGCACTTCCTCCGGACGTTCGTGGATGTAGTGGACAAACCGAGCAATGGCCTGGACGATATCGTTTCGATTTTTGTGAAACACATTGGCGATCACGGTGTCTTTCAGCCATTTCCACAAGCGTTCGATCGGGTTCAGTTGCGGAGAATACGGAGGAAGGTAAATAAAGTGAAAACACTGTCCTTCTTCCCGCAAAAACTCCTTGACCATTTTGGCATGGTGAATGCGGGCGTTATCCAACACCAAAACCATGAGACGGTCTAAATAGCGCTGTTTGAGCATTCTCAAGAAATCCAAGAACGTCGCGGCATTGGCAGCGGTCGTTTGATGAAGCACCGTTTCGCCATCGTGGATGTTGACCGCGCCAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 175115-173280 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEWL01000009.1 Geobacillus uzenensis strain BGSC 92A1 contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 175114 30 100.0 39 .............................. CCGTATCCATTCGTTCTTTCACACACCGAGGAAACAGGC 175045 30 100.0 36 .............................. TCCGGTGCCCAATGCGGTTTAGCAGGGTAGCTGTCC 174979 30 100.0 37 .............................. AGTGTTGTCATAACCCCGCTACCGCAACAAGAACAAG 174912 30 100.0 39 .............................. TTAGCGACAATTTGAATGTGTCGAGCAATTTCTTGATCA 174843 30 100.0 35 .............................. TTAGATGTCGTGGAACATTTCCTGTTCGCGTTCAC 174778 30 100.0 36 .............................. ACAGCTTGAAGATCGATAAAACAAAGTGGTATCGCA 174712 30 100.0 40 .............................. TTCTTGCAGGTACGATTTCAACCGCTCTACTTTGGACTCA 174642 30 100.0 39 .............................. TTAGCGACAATTTGAATGTGTCGAGCAATTTCTTGATCA 174573 30 100.0 35 .............................. TTAGATGTCGTGGAACATTTCCTGTTCGCGTTCAC 174508 30 100.0 41 .............................. TACAATGGAAAAACACGTCAAAAGTATCATGATAGTATCAT 174437 30 100.0 35 .............................. ACGCTAGATGAACAAAAAAATGATTTTGACCTTAT 174372 30 100.0 39 .............................. CGGTTCAATAACGAAGGAGGACGATATTTATGAGCATGA 174303 30 100.0 34 .............................. CCTTTTGACTAATCCGAATACTACGCAGATCGGC 174239 30 100.0 36 .............................. CGAGTTTACAAGGACAGACCGAGCCACTACCCGATA 174173 30 100.0 36 .............................. TTTTTGTTCTACATTTTTTAAAACGGGAGGTCATCA 174107 30 100.0 35 .............................. ATTCCAGGTCTCATCCGTCACCTTTCAGAACAGAG 174042 30 100.0 35 .............................. ATTCCAGGTCTCATCCGTCACCTTTCAGAACAGAG 173977 30 100.0 35 .............................. TTTAGCCACCAAAACACGCTCTACTTTTTTATCGC 173912 30 100.0 35 .............................. ACCTTGACACGTTCAGCAGTGTTCTCCCGTTCCCA 173847 30 96.7 39 .............................T GCTTCTGAGCTGTCCTACGAGCGTCACTATATGTTTTCC 173778 30 96.7 37 .............................T AAATAACCCGTCCGCCGGGTTGCAAACGGGTGGATAG 173711 30 96.7 37 .............................T TTCGCGTTTCCTTTCGCTCCGGCAAACTTCTTCACAA 173644 30 96.7 35 .............................T GAAACAAAATTAAGTGCTATCGATGAGCAATATCA 173579 30 96.7 37 .............................T GCGTGGTTTTCTAGCGAGGGCAATCGGCTAACCCGCC 173512 30 96.7 38 .............................T TCATTTCGCAGCCGCTTGGCGTCGTCCTGTCGCGATAC 173444 30 96.7 39 .............................T CTGCGCGTACATAAGAAGCATTTCTGCGGTGGTTTTTGG 173375 30 100.0 36 .............................. AGATCATCCAACACATCCGCCTCCGAGTCCAAAATG 173309 30 86.7 0 ....................A..CC.G... | ========== ====== ====== ====== ============================== ========================================= ================== 28 30 98.7 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : CACCCCATCGGTTCACTTGCCTGCGGAGCGGCTCGCCAAACTCGCCTCCGTAGCGTCAGCGCCGCTGCAGCCAGTGAAAGAAGCGATGGCGAAAACGGAAAAAGCGGGATACCAAGAGGCGATCATCGGCCGACTGCTTCGAGACATAAAAAGTTAGCACTCGCCCTTGTTCATGCAAGTGTTGGGATTCCAATGTTTGTATTCGTCTTGCCTGCGATGGATGGGCAGGCGGCGCCCCGGTTTTATTCACCGCATGACGAGCGCTTGCCCTCGCTTAGGCAAACAGCAATCGGCAAACAAGGCACGCCAAACGCTAGGAAGCAGTCTTCGTTTGTCGTCGACCTCCAATGACGCAAAAACCCCAGGGGGTCGACGACATTGGTTTTGATCGCCTGATCCCTACAGCCATCAAGGGTAGACTTGATTGACAGAATCTTCGAAACGTGTTATGCTGAAGTTGCCGTTGCAGGAGAAAGCTTGTTATGGCAGCGCTTTTTGGG # Right flank : GTCAGCGCACTATTTTTGCGGAAAGATCCTTATCCCTCCACTTTCTATCTGTTTTTCTTTCCCTATCTTCCTCGAAAAATTTTGACCCACAATCGCTAGTTCAGCCCATTTTTTATGCGAAGTTTTCCAGAAGGCTGGTGAAAAACAGCAGTTTCCCTTGATCAATGGGTGAACGTGTGCAAAGAAGGAACGATGCTACAGTTTTTTCTATTATTTGAGAAACGTTATTGAGAAGCGGCCTACTCCCTTAAATCACCAGCCTTCCAAAATGTCTTTCCGCAGTAGAGGATTCACCGATTTGTTATGAATTAAGAAAATAATAAAATCACTTGCTTGAATTTTGGAAAATAGTTTAAAATTGGTATAGAAATAGATATATTTTCCTGGTTTGTTCATGCTAGATGGAGATTTGAAGAATAGGAGAGAGATTGGCTTGTATCAGCACATTGTATTGACATGCGGCGTTTCGTTATTGACGGGGGCTAGGAATGTCTTTTCGG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //