Array 1 82815-81695 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKTY01000014.1 Klebsiella pneumoniae strain AS012429 AS012429_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 82814 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 82753 29 89.7 32 ............TG............T.. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 82692 29 100.0 25 ............................. AACATCAGTGGAAATCCACTGCGGC Deletion [82639] 82638 29 96.6 32 ......T...................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 82577 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 82516 29 100.0 32 ............................. CGGTAACGCAAATGTGATCCGATGTCGTCAGG 82455 29 89.7 32 .........T...T.A............. AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 82394 29 100.0 32 ............................. CAGGTTATACTGGCAAAACGTCGATGGCTCTC 82333 28 93.1 32 ..........-..T............... TAAATCAGCAAATATTGTTGTCTACCGTGTCG 82273 29 93.1 32 ............TC............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 82212 29 93.1 32 ............TG............... TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 82151 29 93.1 32 ...........CG................ AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [82137] 82089 29 89.7 32 .............T.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT CC [82076] 82026 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAATTGGGACCTGTTC 81965 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 81904 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 81844 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 81783 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 81722 28 89.7 0 ..........A............-....A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 94.4 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGTGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAAC # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.77 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 97847-93919 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKTY01000002.1 Klebsiella pneumoniae strain AS012429 AS012429_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 97846 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 97787 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 97726 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 97665 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 97604 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 97543 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 97482 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 97421 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 97360 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 97299 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 97238 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 97177 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 97116 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 97055 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 96994 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 96933 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 96872 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 96811 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 96750 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 96689 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 96628 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 96567 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 96506 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 96445 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 96384 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 96323 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 96262 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 96201 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 96140 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 96079 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 96018 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 95957 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 95896 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 95835 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 95774 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 95713 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 95652 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 95591 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 95530 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 95469 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 95408 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 95347 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 95286 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 95225 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 95164 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 95103 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 95042 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 94981 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 94920 29 96.6 32 .............T............... GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 94859 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 94798 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 94737 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 94676 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 94615 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 94554 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 94493 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 94432 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 94371 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 94310 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 94249 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 94188 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 94127 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 94066 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 94005 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 93947 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 65 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //