Array 1 31326-31791 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTCM02000049.1 Hassallia byssoidea VB512170 NODE_78_length_47669_cov_31.3037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 31326 37 100.0 36 ..................................... AGACCATAGCTTCCAGTCAGAAGTAGTTAACTGGTC 31399 37 100.0 34 ..................................... GAGCTTACAGTTCCTGCTGCCCCCAAATACAACC 31470 37 100.0 34 ..................................... GAAGGCTTGCCCGTTTTTCGATATTATTGAAAAA 31541 37 100.0 33 ..................................... CAAGCACCTTACCCGTTTTTTCATTCTACGGTA 31611 37 100.0 35 ..................................... TAAATGTGGTAATAGTGAATGTCATAGTATTTTTA 31683 37 94.6 35 ..T.............G.................... TAAAGCCATGTTGAGAGCAATATTCGCTATCAAAC 31755 37 94.6 0 ..T.................G................ | ========== ====== ====== ====== ===================================== ==================================== ================== 7 37 98.5 35 GTCGCAACCCTTCTTCCAGCTATGGGAGGGTTGAAAG # Left flank : AGCAAAGGAATTAGCACTTTCTGCTTACAATCTTCGCCTAGCTAGGCGAAGTTGACAAATATCTGAACCTTGACAATAAAATAATAAATAGCGCCGCAGTTCATGCTGCTTGCAGCCTGTGAACTGTGTTAAATGAGGGTTAGTTTGACTGTAGCAATACAGTCTTGCTTTCTGACCCTAGTAGCTGCTCACCCTGATGCTGCTGTCTTCGGACAGGATAGGTGCGCTCCCAGCAATAAGGGCGCGGATGTACTGCTGTAGTGGCTACTGAATCACCCCCGATCAAGGGGGAACCCTCCCCAATTCTTCATTTGACGCTTTTTAGCAAAGTGAAATTTGCTAGAAGATTCGCGCAAACTCTGAAAACCTTACCATACAAGGAATTTAGTTATAAATTTCTTTTGTGAACAATTCAAAAATTACATCCTGGAAGGATATTTGACGAGGTTCGCGCAAGTAAGCTCTGGAAACGTTGCTAGGCAAGGGTTTGATCTAGTGCC # Right flank : GATATTTGAAACTGAGATTAGTTTTGGGTTTCAGTAAGTATTAAATTTAGGGGTGGGTTGAAAGCAAGTCCTTTTATCCGCTTGTTTGAATTGTTCTGTATGATAATTACAGAGTGTATTATCTTAGCGACATTAATTTGTCACCATTAAATGAGCGACACCTAATTTGCCACGACGACAACTAGTCTGGCTCAATGACAACAATTTGTCACCGACGACATATAATTAGTCACTGTACATTAAGTATAAATTGTAGCCAAAAAACTACAACTTTTAAATAGTGCGGATAAAAGGACTTGAACCTTCACTCCTCTCGGAACTAGAACCTAAATCTAGCGCGTCTGCCAATTCCGCCATATCCGCATCAGTTTTCTATATTAGCATAACAAATCATCTGTGGCAATAGGGAATTGGGAATTGGGCATGGGGCAATGGGCATGGGGGAGCCAGTGCGTTGGGGAGGCAGTGCGTTGCGGGGGTGGAGGAGTTTGTAGCACCTG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAACCCTTCTTCCAGCTATGGGAGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 91736-91906 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTCM02000009.1 Hassallia byssoidea VB512170 NODE_15_length_129165_cov_31.7487, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================ ================== 91736 25 100.0 48 ......................... TTTAGGGAGAGCGATCGCATGATACTGCAAGATATTGTTTCAATCCCG 91809 25 100.0 48 ......................... TATATTGAACTCTACTATCAGTAAATACGATATTTTGTTTCAATCCCG 91882 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ================================================ ================== 3 25 100.0 48 CAAGCGGGAATCATTAATTTGAAAG # Left flank : GTCTACGGGAGGGCTAAAATTAACTTTGACAAATTCTGGAATGTCAGATTCTTTCAGATTACCAAGGCGCAAAATTTGGCTTGCTTGTGCAGAAAAGCCCATCCCCGCAAAGAAATAAGCTGCTAGTGCTAATGCCTGTCGCTGTTCGGTTGAGAGAATAACGGGGAAATTTGACTCTACCAGTTCGTAAGGATGGTGAGGCGCACTTTTAATTTCTATACCGCAGTCTCTCAGCTTGCGAATTGTGCGCGTGAGTTTTTGCTTGATATCCATGTCGTCTGATGACTTGCCGTGTGCTTCCATAAATGGAGATAGTAAGTCAACTAATTCTTCTCGCTTCCGTGGCTTCTCTGCTAGCTGTTTGAGGATTTCTAGGGCGAAGGCGATTTGGTTGTAATTAGTATCAAGTTTATATGACATAGTTTCTGGAGAAGTTAGTTAATTTAAAATTAACCTCCTCAAGCAGAAAACTTTAAAGTTTCAATACCACGGCAGCATCC # Right flank : GGCCAGGGAAACTAGGTGATTGGTGTTGTTCCTCGATGAGTTTCAATCCCGCTTGCGGGATTGAAACAAATTAAGAGCGATCGCTTTTATGCAAATGTATAGTTACTTTCAAATAAATGAAACCCGCTTGCGGGATTGAAACTATGGCTCGTGGGCAAAAATGCGGCGTGCGCTATCTTTCAAATAAATGAAACCCGCTTGCGGGATTGAAACACGGATAGCGTCAGTAGGCAACATGACCTTAACCTTTCAAATAAATGAAACCGGGCAACGAAATTGAAACTTCCCCATAAAGAAATAGAATTCATCGACGATCGCAACTTTCGGTCATTGCCAAAGCGATATACTAGACAAGTAAATTAACAAAATTTAACAATGGTAGAACGCCCAATCAAAAAATCGGAACGTCAGCCCTCTTCAGGTAATGACAGCAAGTCAGAAAATTCGGATTCTATGCCGACTCCTCAATCCAATCCCAAAAGCTCAAAACAAAGTGATGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCGGGAATCATTAATTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 91936-92188 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTCM02000009.1 Hassallia byssoidea VB512170 NODE_15_length_129165_cov_31.7487, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 91936 37 70.3 38 .C.CG.TGAGTT.C..T.................... AAATTAAGAGCGATCGCTTTTATGCAAATGTATAGTTA 92011 37 100.0 34 ..................................... TATGGCTCGTGGGCAAAAATGCGGCGTGCGCTAT 92082 37 100.0 33 ..................................... ACGGATAGCGTCAGTAGGCAACATGACCTTAAC 92152 37 81.1 0 ...................G.GCAA..AA........ | ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 87.8 35 CTTTCAAATAAATGAAACCCGCTTGCGGGATTGAAAC # Left flank : GCGCACTTTTAATTTCTATACCGCAGTCTCTCAGCTTGCGAATTGTGCGCGTGAGTTTTTGCTTGATATCCATGTCGTCTGATGACTTGCCGTGTGCTTCCATAAATGGAGATAGTAAGTCAACTAATTCTTCTCGCTTCCGTGGCTTCTCTGCTAGCTGTTTGAGGATTTCTAGGGCGAAGGCGATTTGGTTGTAATTAGTATCAAGTTTATATGACATAGTTTCTGGAGAAGTTAGTTAATTTAAAATTAACCTCCTCAAGCAGAAAACTTTAAAGTTTCAATACCACGGCAGCATCCCAAGCGGGAATCATTAATTTGAAAGTTTAGGGAGAGCGATCGCATGATACTGCAAGATATTGTTTCAATCCCGCAAGCGGGAATCATTAATTTGAAAGTATATTGAACTCTACTATCAGTAAATACGATATTTTGTTTCAATCCCGCAAGCGGGAATCATTAATTTGAAAGGCCAGGGAAACTAGGTGATTGGTGTTGTT # Right flank : CTTCCCCATAAAGAAATAGAATTCATCGACGATCGCAACTTTCGGTCATTGCCAAAGCGATATACTAGACAAGTAAATTAACAAAATTTAACAATGGTAGAACGCCCAATCAAAAAATCGGAACGTCAGCCCTCTTCAGGTAATGACAGCAAGTCAGAAAATTCGGATTCTATGCCGACTCCTCAATCCAATCCCAAAAGCTCAAAACAAAGTGATGACCGCTCAAAGGGTAGAGGCAAAAAAGCATCCTTTAAAGATGAATCCAGGCAATCGGTTAATCCAGCCCTAGCGCGGGGTCCGAAACCTGTTAAACCTCAGCCGAAAGTCATCATAGAACCGGAAAGCGAATCACAACCAATTTCCGAAGAATCTCAAGATTAAAAAGTAGAATTATCAGGATAATTCAAATAATCACAATTGAACCATTTGAGATTCTTTGACGTTATCGATATTTGATAGCGAAATCCTTGAGAGTCCGAATACTGCGTAGACGCGGAGCG # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.39, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAATAAATGAAACCCGCTTGCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : NA // Array 1 21799-21399 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTCM02000109.1 Hassallia byssoidea VB512170 NODE_208_length_21937_cov_31.5554, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 21798 37 100.0 36 ..................................... CTTTTTAACTGATGATGAGTGCTTGAGTTTTCTCGG 21725 37 100.0 34 ..................................... ATTCAACTATAGAGCGTCTTTCTACGATTCAACA 21654 37 100.0 35 ..................................... TATTCATGTCCGATGTCTTGATTTGGGATTGGAAA 21582 37 100.0 37 ..................................... ACGGAAACTTTCAATTATGACGGAAAAACTGGATATT 21508 37 100.0 36 ..................................... CAGCGACCCGATGTCTTTTACCGCACCTCTGCCAAC 21435 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 100.0 36 GTTTCAACAACCATCCCGGCTAGGGGTGGGTTGAAAG # Left flank : TAGACAAATGGGGACAGGCTTCATCAAAAATAGTCGTGGGTAATTGCGGATCTACAAAACAAGCCTGTCCCCATTTGTCGTGGGTTTTTGCAAGGGTTGAAAGCGCACAAGTAGAGGAAAACTGGGACGAGGACAATG # Right flank : TATTATTTTAGTTTTCATCATTACAATTTTGTGAAGAGGGTTGAAAGGCGCACTTCGTTCGGGATTTATCCTGAATATTTGCAGTTATATTAGAGTTTGGTGAAGGTTAAGCTTGAACCAGCCCCATAAAAAAGTCGGCGACATTAATTTGTTAACGACTATCACAGCAAGTTCGACGACATTAATCTCTTAACGACGACATTTAATTAGTTATTCGACAACATTAATCGGGATGACTGGATTCGAACCAGCGGCCCCTTCGTCCCGAACGAAGTGCGCTACCAAGCTGCGCTACATCCCGCCAGAAAAATGGCATATCATACACAGCATAACATGAACCCCGATGAATTACAAACTATATAAGGACAAGGGGACGACTTGGGGGAGCAGGGGTTTCACAAAAACTAGACAAAAATGGACAGGCTTGTTTTAAAGATCCTCAACACCCAACGAGTCACTCAGATGTTCGCGCTTCGCGTCTCCGAAGGAGAAGCCTGTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACAACCATCCCGGCTAGGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 1 14734-14548 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTCM02000113.1 Hassallia byssoidea VB512170 NODE_220_length_21091_cov_31.0582, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 14733 38 100.0 36 ...................................... TATAGCCCCATTCAGGGGTTTGTCTGTTTAAAATTG 14659 38 100.0 36 ...................................... GATGATGAAGATGCAATCGCGCTGGTGAACACCTCC 14585 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ==================================== ================== 3 38 100.0 36 CTTTCAACCCACCACAACCACGGGAGGGCTTTGGAAAC # Left flank : GGGGAATTAGCTCAGTTGGTAGAGTGCTGCGATCGCACCGCAGAGGTCAGGGATTCGAGCTCCCTATTCTCCATTTGTCCATTAAATAATTATTGTCAGTTTTAAAGAATTAATGTCCATTTTGACGAAGTTCAGGGACATAAGTTACGTAATTTAGCGACTTTCAGCTATCAAATCAGTTTTAAAGAATTATTGTCCAGAGTTGAAACCAGTTTTAAAGAATTATTGTCCAAAATCAACCTCTAAAACTCGCCTAAATATATCTTCTCTAATTTAATAGATTACAGCACAACGCTTGGCTCTTGAACTACAAGACTAGCTTTAAAGCGCTTTATTTGCAGTCTAATTACAAAAATCTACTACCTCTTCTTTTACTGTTTTCACCCAAGCAGAGGCTCCATTACTAAAAATAGTTGCGTTTTAGGTGCGATCGCAGCGCTCCTTTCAAACCACCCTAATACAAAATTATATAGCCAAAGTGGCGTCTTCAATGATAATAA # Right flank : CCCACCCGTGAAAACTCTTGCCAACAATGGCTTTTGAAGGCAAATTTGGCAAGCCTTCTTTAATTACTATTTTCTACAGCCAAGGAATAAAATTTTATTCATAACTGAAACAGTAATACGATTTCTTCTTACGATCGCTACTCATGGTGACAACATCTCCACCAAATCAATAATTTTTTGTTTGTGTAATTAGAACTAATTACTTATTCGTCTTCGCCAGATAACGATCGCCCCTTGACCCGATCGCTATCCGAAAACCTCGGCATTGTCGCACTTGTTCAATAATGCTTTTAATCTACCACAAAACATTGTCACACATTGTTAAACATTATTGAGCCTTGTTCCAAGGTTACAGGAGTATGATGAACTGGCAACAAATCTTTGTAGTGTTGATGAGCCAGAGCGATCGCGTACAAACTTCCATATATTTCCCCAAGGATATCCACGAGGCTTTGGTGAGATGGGCTGAGGAAGAAGACCGTCCCATCAGTAATCTTGTG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCACCACAACCACGGGAGGGCTTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA //