Array 1 117462-118044 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHRT01000001.1 Fusobacterium nucleatum subsp. polymorphum strain KCOM 1001 F119_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ======================================== ================== 117462 39 100.0 39 ....................................... CTTTAATTCCACCAAGTTCTACAGTCATTACAAGTTTAA 117540 39 100.0 39 ....................................... CTTTAATTCCACCAAGTTCTACAGTCATTACAAGTTTAA 117618 39 100.0 39 ....................................... CTTTAATTCCACCAAGTTCTACAGTCATTACAAGTTTAA 117696 39 97.4 37 ......................................A TAATCATGTATAACTGCTGCTTTTATATATTTTCCAA 117772 39 92.3 38 ................T...................CT. TTTATAATTTTCTTTGTTAATCTGTGTTCAAGTCTAAG 117849 39 100.0 39 ....................................... ATTTCTTTTATTTCACTATAAAATCTTCCTTTACTTCCA 117927 39 97.4 40 ......................................G AAAAACTCCAAAGCATTAAGTTCTACAAGTACAGTATTAA 118006 39 74.4 0 ......A.....................TTCCTTTT.T. | ========== ====== ====== ====== ======================================= ======================================== ================== 8 39 95.2 39 ATAAGAGAGAATATAACTCCGATAGGAGACGGAAACAAT # Left flank : GCAGATATATACAAACCAGTTTTAATTAAGTGATAATTATGGATAATTGGGATTTTTTAGATGAAGATTTTAAAAAGGAAGTTTTTGAAGATAACTTTACTGTTATTATAATTTATGATATTATATCCAACAAGAGAAGAACACAGTTATCTAAACTTTTGAGTGCATTTGGATTTAGAATTCAAAAATCAGCATTTAAATGTCTTTTAACAAGAGAAAAATATAAATTACTTATTGAAAAAATTGATAGATATGCAAAGCCTCCAGATTTAATAAGAGTTTATAGATTAAATCAAAATGTAGTAACTCAAATTTATGGAGAAAAATTAGAAAATGAAAATGAGATATACTACTTTTTCTGATGAAAAGTAGACGATATAATAAAAATGGGAAGTTCAATATGATTTTTGATAAAACAAAATATAAATTTTTAAAATTTAAAAAATCACACGATAATAGTTTTATAAACTATTGCAAACAAAAGTTTTTTTGAGTATAGG # Right flank : TGACAAAAAATCAATATCTTTTTATAATATCAATATAAAGAAATAGAATTCTAAAAAAGATAAAAAAGCCTAAAAATACTATGATATTTCAATATTTAATCAAGAATTTCTCACAATTGAAATTTTTACAAAAAGAAATAAAAACTATTTAAGGAGGAATTTTATGAAAAAAATACTATTGTTTACATTGTTTATAGGAATTTGTATGAGTGGAGTAGCAAGTACAAAAGAAAAAAATCCAAATCTTTTAAAACAAGTATATAAAAAGGAAGAATTGATAACATTGGACAAAGAAAAAGTAGCAGGAGGAAACGGAACTTTACATGGGAAATTTGCTTTTACAAGAGATATGGCTACTGAAGATGAAGCTATCAAAGAAATAGGATGGATGACACTAAATAAGGGTGAATCTATTGGAGTGCATCCTCATAAAAATAATGAGGACACTTATATTATTGTTTCTGGAGAAGGAATCTTTATAGATGGTTCTGGAAAAGAAA # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAAGAGAGAATATAACTCCGATAGGAGACGGAAACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.10%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 885911-884226 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHRT01000001.1 Fusobacterium nucleatum subsp. polymorphum strain KCOM 1001 F119_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 885910 30 100.0 35 .............................. TTTAGAACATATTAATTGTAAATTTAAAGTCTTCA 885845 30 100.0 35 .............................. GGAGAGTATGTGGAAGATAAGAAATTAAAGAGTAT 885780 30 100.0 36 .............................. TCAGGAATATATTTTAATTTTTCTATTACACTCTTA 885714 30 100.0 38 .............................. TTATCAATAACATCATCTATTTCATCAAATATAGAAAC 885646 30 100.0 35 .............................. CAAGTAAATGTGAATATGGGTGGAGTTGTAATAAA 885581 30 100.0 35 .............................. CATGTAAGAATTTTTATTAATGAAAATACAATAGA 885516 30 100.0 36 .............................. ATTAAAAATATAAAGTATATTATCCAAAATAATACT 885450 30 100.0 37 .............................. TTTGATTTTTCTATAACAGAAGGAATTAGAACACTTA 885383 30 100.0 40 .............................. CTGATAAAGATATTTGTAAATATATAGAAAATAATTATTC 885313 30 100.0 36 .............................. TGTAGACCTAATACATTTCAACAAACTTATGAGGAA 885247 30 100.0 36 .............................. TGGTAATATCTCAACTACTCTATAATTAATATTTTT 885181 30 100.0 36 .............................. CAATGAGGACATCTTTTTTCTTTTTGTTTTTTCTCC 885115 30 100.0 37 .............................. ATAGGAAATTTTTTTCTTTTTTTAATAAATTTTTGTT 885048 30 100.0 36 .............................. GCTGCTGTTATACATGATTTTCTTTACAGTGAACAC 884982 30 100.0 36 .............................. AATAAAAATATATGAAATAATGAAAGAAACAGAAAA 884916 30 100.0 36 .............................. GATATGGCAAAAATTGTTTTATCTCTTTTTGAAAAA 884850 30 100.0 37 .............................. TTACCAGGTAAAGTAGTAAAAAAATAAATTCTGATTG 884783 30 100.0 36 .............................. TTATGTTCATAGCTTCCAAACATCTTATCTAGCAGG 884717 30 100.0 36 .............................. AAACTACAGGTACTTGTTCGTATATTATGTCTGGCA 884651 30 100.0 36 .............................. CAAGCATTTAATAGTAATATGGAGACTGTAAAATTC 884585 30 100.0 36 .............................. TGTTCTAAATATTCCATTCTTTCTATATAGTCATTA 884519 30 100.0 37 .............................. ATATGAAGTTTTTCATTATATCCTCCTTATTCCGAAT 884452 30 100.0 36 .............................. AAGGATATAGGTGTAAAGATACTTCAAAATCCATTG 884386 30 100.0 36 .............................. GTATTTGTTGGAGATATGACTGAATTTATAACTTTC 884320 30 100.0 36 .............................. ACTATTCCAAAAAAGTCAGGTTTTAATATATTCCCG 884254 29 90.0 0 .......................AA-.... | ========== ====== ====== ====== ============================== ======================================== ================== 26 30 99.6 36 ATTTATGTATTTCTATATTAGAATTTAAAT # Left flank : AGAGAAGAAAGGTCTTAATTCTTCAGGAATAGTAAAAAGAATATGCCTGTGAGGAATATTAAGAATATCATTAATCATTTTTTGAGTCCAAGTAGCAGAGTATTTAAAACCACAAGAAGGACAAAGTCTAGATTTACAAGTAATAGGAATAGTATGGAAATGTCCACACTCAGTACAAGTATATTTAATGAAAGCAGCTTTAATATCGCGACAAAGTAAGAATTTATTAATGGAAGCTTTAATATATTCTAAATGTTGTTGAGTTAAAAAAGGGTTGATAAAATTAAGAATATATGGTAAATTAACTAGGGATAGTATTTCTTTAATCATGAGATATTAGTCCTTTCTGTATATTTTAGAGCAAATAAATTTTACAGAAAAAGAGAGCCAATTGCAAAAGATTTTTTTAAAATCTGCAATTGGCTTTTTTTACTAAAAAACTTATATTGACAAAAAGATATTAAAAAAGTATTATATGGGAGTAGTTTTTTTAGGTAGCT # Right flank : ACAGAAGAAAGGGATTGAAAAATAAAAACTTAATGCTGTTATATAACAAAAGAATAAATAAAAAATTAAAAGGATTAACTCTAGTTTTTTATATAAGTTAATCCTTTTTAATAAGTTAAATTAAATTTATTCAATTTTTTTAAGGGGAGTACATTTTTTATTATGTTAAGTATAGCTTTATAAAGTGAACTAAGAATTAAGTATTCATAAAGTAACAGAAAAATTAAAAAAACGAAATTCAACTAAAATATTAATATAATGAACACAAAAATTTAAGATAGAAAATAAAAATTATCAATTATTAAATTAATAAAATTTTATTAAAAATTAAGCGAATTTCACAATAAAAATATTGCATTTAATCGTAATTGGTGTTAATATATACTTAATAAATTTGAAAGATAAATTTAAAGTTTTATCTACTAAAAATAGGGAGTGATTATAATGAGTTTTTTAGGGCAAGTTAGAAAAAAAGCCTTACAAGCAAACAGAAGAATAGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTATGTATTTCTATATTAGAATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:90.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 1791478-1790471 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHRT01000001.1 Fusobacterium nucleatum subsp. polymorphum strain KCOM 1001 F119_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 1791477 37 100.0 37 ..................................... GTAGTTTTTCGCAGTAATCAGAAGTTCTTCTTCCTAG 1791403 37 100.0 34 ..................................... TTAACATTTACATCGACCTCCCAGTCATTTTTAT 1791332 37 100.0 34 ..................................... AACAATGATGAGAAGATTATGTTAAGATATTTGC 1791261 37 100.0 40 ..................................... TTAGAATACCATTTTTACTGATATTCTAAGAGTATTTTTA 1791184 37 100.0 34 ..................................... AACCAAAGAAGTTATAAATATCTACTTCATTTGC 1791113 37 100.0 35 ..................................... TTATAACACAATTCATATTAGCATACTTACCAGGA 1791041 37 100.0 37 ..................................... TTTAATCTTGCTATAAGCTTAGCCTTATCTTCCTTAA 1790967 37 100.0 40 ..................................... ATTGCTTGACCTATCAAAGCTCCTAAATTTTCACACACAG 1790890 37 100.0 42 ..................................... CCATCTGATACTGTTGTAGATAGCAATGCTTTTGCATTTTGT 1790811 37 100.0 38 ..................................... ATTGGGTCTATAATACCTAATTGTGCTATTGTGAAAGT 1790736 37 100.0 37 ..................................... ACATTCCTAATTGCAAAGCTAAATCAATATAAGACAT 1790662 37 100.0 39 ..................................... TTCTCCCAAGATAATAACCTACTAAAGCAATACTACCAA 1790586 37 100.0 42 ..................................... TATAAGTGTATGCTGAATCAAAGTATGCTTTTTGTACTGTAA 1790507 37 94.6 0 ...........C............C............ | ========== ====== ====== ====== ===================================== ========================================== ================== 14 37 99.6 38 GTATTGAAGGTAATCCATTTATAATAAGGTTTAAAAC # Left flank : TGAAAGTTATGATGCTTGGATAGAAACAATAAGAAAACAAATAAAGAAATCTGAAAGCACTCTAACAAATATAGAGTTTAAAAAGGTTGAACTAGAAGCAATACAAAAATATATAGCATAATAAAAATTAAATATCAGCTGATATAAAGAAAATGGAGTTTGACAACTCCATTTTTCTATAAAAAAATATATTGAAATTTAATATAAAATTATGTATAATAAGTTATAGTTTACAAGTTAATAAAAATGTTGTAAAATATAGAAATAAGAAAAAAATTATGTAGAAAAAAGGTTATAAGGTCAATTTTTTAACATTTTATATTTAGATTTATATTAAAGAATAAGATGCTCACTATTTTAAAAAAAAGTAAAAAATCTGTAATAAAAATTTAATATAAAAGGTTAAGAATCCGTGAATTACGGAAAAATGTTCAAATTTTGCCACCATATAAAAAAAACTTCTTTCTAACATAAATACGACATTCATCCCTTTGGTAAGG # Right flank : CTACATACTTTTATTAAAAGATTAAAATTTCATCATTTTTAAATTTTTTAAGTTCTAAACTTAGCAATTATTCGAAGTCAGTTTATAATGAATTTTTTTTATAAAAAAATATCTATTTAAAAAATAGATATCTAAACACAAAAAATGGAGTTTGTTATTAAGCAAACTCCATTTATATATTCTATATATTATTTTTAGAATTTGGATACTATAAAAAATTCTACTAATACTACATATAATATTTATTATTTTTTTAGTCTAAAAATTATTTGTATAAGAACTATTATTACTAAAAATTTTATTATAGTTAAAAGCATAATATAATTCCTCCTTGAAAAATAAATAAAAAACTATAAATTGGCAATAATTACTTTAAGTGTTATAGTTACAAAATCTTTTAGTATACTCATATTATCAACTCCTTTTTAATAAATTTTGAAAGATAAAACTATTTTTTTAAAAGCCAGTATAAAAATAATAAATCTAACATTTAATCACTC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTGAAGGTAATCCATTTATAATAAGGTTTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 4 2073183-2074658 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHRT01000001.1 Fusobacterium nucleatum subsp. polymorphum strain KCOM 1001 F119_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2073183 30 100.0 36 .............................. ATTAAGAAAATTTGATTTCGGAAGTTACGAAATTTC 2073249 30 100.0 34 .............................. TCAAAACCTAATGAATTATGAGATAAAACTTTTA 2073315 30 100.0 35 .............................. AGGATTATAAATCAGAAAATGGAAGTTACCCTCTT 2073380 30 100.0 35 .............................. ACATTCCAATTTTTAAGAACAGGATCATCTTTATT 2073445 30 100.0 35 .............................. TTTTCTTCCTCCTATTAGTCGAATTTACGGCTTTT 2073510 30 100.0 37 .............................. TAGGTTAAAGCATCTATTAACCTATTTTCTAAATTAT 2073577 30 100.0 39 .............................. TAAAAACAATGCTTTTCAATAATATTTGGACATTCTTTT 2073646 30 100.0 37 .............................. GCCATTAAAATATGAATTTTGAACTTTATCATATAAC 2073713 30 100.0 36 .............................. TCCAGCAGATACTTTTAACTATACTGTAAAGGCTTA 2073779 30 100.0 34 .............................. TTAGAAAATATTAAAAATATATCAAATGAATTAC 2073843 30 100.0 36 .............................. ATTGGAAATAATAGAGTAGGAGGAACAAATGGCAAC 2073909 30 100.0 35 .............................. ACGAAAGAAGAGTTTTATATACCATGTCCAAAATG 2073974 30 100.0 36 .............................. TAGATAAAGATGCATAGTGTATAGATTGATAGTAAA 2074040 30 100.0 36 .............................. TAGCCTCCTGAATAATAGCATATTTCTCTTGCTAAA 2074106 30 100.0 35 .............................. TAGTTTATTCACTCCCTTTTTATTATTTGTGTTTA 2074171 30 100.0 34 .............................. TAGATTTCTCTAAAGACTTTGTTATTACTTTTTT 2074236 30 100.0 37 .............................. TTTTTTAGAAAAGTAGTAATTATTGATTCTGCCTCAT 2074303 30 100.0 35 .............................. CACATAACCAGCTCATCATAGCCTTTTGAAAGAAT 2074368 30 100.0 36 .............................. TAATTATCATACACAATATACTTATAGTATATAATA 2074434 30 100.0 34 .............................. AATGGAATTTCTAAGGCTGTTCCTATCTGCTTTA 2074499 30 100.0 36 .............................. AGAGAGATTCTTTCTTCTTGTTTTCCTGGTGTGTCT 2074565 30 100.0 35 .............................. AAAGTAATCTCAGAAAAAATTCCATAAACTGCTTC 2074630 29 86.7 0 ............T...-....G...A.... | ========== ====== ====== ====== ============================== ======================================= ================== 23 30 99.4 36 ATGAACTATAAACTTGAAAAGTTTTGAAAT # Left flank : TTTTCCTTAAAAAATTCATATTAGTTTAGGAGATGAGAAAAATTGAAAAATATAAACTATAATTATGCTTGGGTGTTTTATGATGTTTCAGAAAAGAGAGTAAATAAAGTTTTTAAAATATGCAAAAAATATTTATCACATTTTCAAAAATCTGTTTTTCGTGGAGATATAACTCCCTCTAAATTAATTAGTTTAAGAAGTGAATTGAAAAACATAATAGTTGAAAATGAAGATTTTGTCTGTATTTTAAAATCAATAAGTCCTGATGTTTTTGGAGAAGAAACTTTGGGAAATCCAACTCCAAATGGAGAAAATATATTTTTATAAATAAAAAAATTTCCCAAGCAATATTCTAAAAAAATATTTAAACTTTCCAAAATATGAATGTTTTAGAAAAAATTAAATAAAAAGTAGAATTGCTTGGGAAAAATACATAAAAAATACTTGTAATATTGAGAAAAATAAGGTATTATAAATCCATAAAGCTTGAAAAAATAGCT # Right flank : TTCAAAGTCTTCTTTCTTTTTCTTTTATCCATCCATAGTAATTTGTAAATAAAAAAGTGATCCTATCATATAGAATATAAAAAAATTAAATATAAATAAAAATAAAAATAAAATAGTAGTTTAAATATACTATTTTTATAAAAAAATACTGTAAAGAGAAAAAATAACCAAAATCATCTAATTGGAGTCAAATATTATATATCAATAATATGGAAGTGAAATATATTGGAAAGAAAAGAATTAATAGATTTAATAGAACAAATAAAAAACTTTGAAGGAACAGAGGAAGAAGAAGATATTCTTTTAGAAAAACTACAAAATTTAGTTTTGGATCCAGAAATATCTGATTATATATACTGGACTGATATGAGTTCAGAAGAAATAGCAGACAAAGTATTGGCTTATAAACCAATCATATTAAAGAATAAGTAAAAATCTATTAAAAATTCTTGAAACAAGGAGGAAAGTATGAGAAAATTTTCTATACATGGAACAGAAGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGAACTATAAACTTGAAAAGTTTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 5 2428664-2430805 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHRT01000001.1 Fusobacterium nucleatum subsp. polymorphum strain KCOM 1001 F119_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 2428664 37 100.0 36 ..................................... TTCAATTAATGGATAGCTTCTTCCAATAGGATTTGA 2428737 37 100.0 38 ..................................... CTCTGATTCATATAGTCCTTTTACATCCATATCTATGT 2428812 37 100.0 38 ..................................... CCCTAATCTTTCTTTATTTCTCTTTTGTTCCTCTTTTA 2428887 37 100.0 36 ..................................... CAAACATTGGACCTACTGCACCAGTACTATCATTTA 2428960 37 100.0 35 ..................................... TTACAAAATGTAAATTAACTTTTTATGTATCCCAT 2429032 37 100.0 42 ..................................... TCCAGATGTTTGTAAATCATTATAACCTAATGCATCAAATTC 2429111 37 100.0 38 ..................................... GTACCTTTATGAGCTTCTTTGAATATATTAAATGATTT 2429186 37 100.0 39 ..................................... TAAAAATATTTTTAAAATTTACTAACATAAGTGATAGGT 2429262 37 100.0 36 ..................................... TTAAGCCCAAGAGCATATACTGTCTCTCTACAATGA 2429335 37 100.0 37 ..................................... TCTTGCAACATCTTCAGCTGATGAACTTGATTGATAA 2429409 37 100.0 37 ..................................... AGAATGCTACTAACGGAGATTTATATGATTTAACTAA 2429483 37 100.0 41 ..................................... GTTAACTGTAGCACTTCCGTTAAAATATTCTTCTTTCCAAA 2429561 37 100.0 41 ..................................... TTCATTAAAACCTTTAATTTCTCCAGTTTTCAAAATTTGGC 2429639 37 100.0 39 ..................................... TCTTTTAATATATAATAATCTTTATCTTTAGAATCATTC 2429715 37 100.0 42 ..................................... AGAATGACTCAAATGCAACAACCAGTTAATAATATGAGTACA 2429794 37 100.0 39 ..................................... TAAAAATATTTTTAAAATTTACTAACATAAGTGATAGGT 2429870 37 100.0 36 ..................................... TTAAGCCCAAGAGCATATACTGTCTCTCTACAATGA 2429943 37 100.0 37 ..................................... TCTTGCAACATCTTCAGCTGATGAACTTGATTGATAA 2430017 37 100.0 37 ..................................... TGTAGCTATTAAAGAAAGTCCTTATGATTTTTCTATA 2430091 37 100.0 39 ..................................... AAATTAAAATAACAACAAATAAAAATCCTTTTAACATAA 2430167 37 100.0 35 ..................................... TAATCTTAGTAGGAAGAACAGGTGAACATTTATAG 2430239 37 100.0 33 ..................................... AAATGAAACAAATCAAGCTATAGTGGGTATAAG 2430309 37 100.0 40 ..................................... AGCAGCTGCAAAAGCATCCATCGCATTAGCCATATTAATA 2430386 37 100.0 37 ..................................... CCGGAACCATAGAGTTCCACCCATTCTTTCCATTCTT 2430460 37 100.0 39 ..................................... TAAGTCGAACGTAGGCTCAACCCTTGTAGCCTCATCAAA 2430536 37 100.0 42 ..................................... GTTCCTCTTAAGTTAGCAAACATGATTTCTTCTATTTCCTTT 2430615 37 100.0 41 ..................................... ATATCTCCCTCATAAATTTCTTTTCCATTTTTATCTTTTAA 2430693 37 100.0 39 ..................................... TCTTCATTTGTAAGAAGTCCAAACGCATAATCAAGTCCT 2430769 37 94.6 0 .....A..............................T | ========== ====== ====== ====== ===================================== ========================================== ================== 29 37 99.8 38 GTATTGAAGGTAATCCATTTATAATAAGGTTTAAAAC # Left flank : ATAAAAAAAGTATTCTTTTTTCTCCCAATAGCTGTCCCTTGAGTTGAAATGTATAGATCCATAGATATTTCCCCCTATATTAAAAAATTTTTTAAATAAAAAATGTAATAAATATAGTTAAAATAGTTTAAAATAATAAAAAAATAATTATATATTATATATTAACATATATATTAAAAATAAAATAGAAAAACTTTAATAAAATAAATATTCTTTTAGAAAAAAATGTTTACAAATTTATAAATATGTAGTATAATATAATAAATATAAAAACATTAGTGTAGAAAAAAGAGTATAAGGTCAATTTTTTAACATTTTATTTTTCTGTTTGTATTAAAAATTAAAATTCTCACTATTTTAAAAGGTTAAGAAAAAACAATAATAAATTTTTAGTACAAAATAGTTAAAATCCTCAAAATACGGAAAAATGTTTAATTTTTGCTACCATATAAAAAAGACTTCTTTCTACCATAAATACACCATCTATCCCTTTGGTAAGG # Right flank : TTTAAAACTCTTATCGTTGTATCAAAGTTAATACAAATAAGAGTTTTTTTATTGCTATTTTATTGTAAAAAATATATAAAATGTTATATAATGATATATATAATTATTGGAGGTGGAGAGAAATGATTTCATTTGGTAAAAATATTCAAAACAGAAGAATTACACTAGGTTTAGATGTTAGTGAATTAGCACAACTTGCAAATTATGTAAATAAAAGCTATATAGAAAGGATAGAAGATGAGAAAATGTATCCATCTGCTAAAAAACTTCCAGATTTAGCAAAAGCTTTATCTTGGAGAATAGATGATCTTTTTAAAAACGTTGAACTTGAAGAAGTTGAAACAGAATATACTTTAATACAAAATGCAATAAGATTTATAAAATCACTTGATAAAAAAGAAATATCTTTAAAAACAATCACTCTTTCAATAGACACATATAAAAAACATTATACTTGTTTATTTGATAAATATATTAGAGAAAATTTTTTAAATAAGGTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTGAAGGTAATCCATTTATAATAAGGTTTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //