Array 1 53056-53484 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYKT01000015.1 Geobacillus thermodenitrificans subsp. thermodenitrificans DSM 465 contig18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 53056 30 100.0 35 .............................. TCAGCTATCTTGCATATTCGTTGAACAGAACAAAA 53121 30 100.0 40 .............................. TGGATTTCGAGGAATTGCGAAACCACTTGATGGAGCTAGG 53191 30 100.0 35 .............................. TACCAAACAAACCATGCTTTTTTCTCTTCATTGTC 53256 30 100.0 37 .............................. AAAATTTATTAACTGGAAGAACGAAGCGGTTAGCAGA 53323 30 100.0 35 .............................. TTACGACGAGTACACATATGACCCGAACGCCGGGG 53388 30 93.3 37 .....................A..G..... CCCTCACCGAGTCCGCGCATTTTTTCTCCTAAACCCC 53455 30 93.3 0 .....................A..G..... | ========== ====== ====== ====== ============================== ======================================== ================== 7 30 98.1 37 GTTTGTATCGTACCTATGAGGGATTGAAAC # Left flank : TGAGACGATCGATAGAAGAAAGAAAACTCATTTTTTCGGGCCGGATGATGAGGTATTTCCCCATCTCATTGAGCTGAATTTTCGCCATAAATATCAAGCGTACTATGGTGTCCCGCCGGTGGAGAGATTGTCAATTCAACCCGTTCATGTCCACCAACGCCATCGCGTTGTGACACTATTCAAAGATATGTATATTACAGGGTGGTTGGGGCATTACCGTCTCTCCTCTTCTCCCGAGCAGTTGACGTTTTTATACCACGTTGGCCTGGGCAGCCGAAATTCCCAAGGGTTCGGCATGTTCTGCCTAACGGGTAAATAATTCGATTCCTCTATTGTCGTCGACCTCCAATCGTGCAAAAACCCCAGGGGGTCGACGACATTTGTTTTTGTCACTTGGCTCCTACAGCTATCACGGGTGAGTGTGATTGACAGAATTTTTTGACCGTGTTATTCTGAAGGTAACATGGGATGAAAAAGCTTGATATAACAGTACTTTTTGG # Right flank : CTTTATCGATTTTGGAGATGGAGCATATCATGTCATCATCAATTTATAAAACACTCTTGTTGTGGTTTTTTATTTTGCGAAAACATCAAATGAAACTTTCGTGGAGAGTGGAATGAAAGAAAGAATTTTATGTTAAAGGATGATGATGTATGAATAATAGAATACAACAATTCTGGAATGATTTTTGTAAGGCAACTGGTCAGGAGGGGATTGAATATAAAGATGCCTTTCAGTTTGGAGCTTTTCCTGATCGGTTGGCTGATTTAGTTGTTAAAGGAAAGAAAACAGCGACAACTTCAGGCTACGTGTTTTATGAGTTAGAAAAAGAACCTATCCCTAAAGCTGGTGAATATTATATTGTTTTGGATGGTCAGGGAGAGCCAGTCGCAGTCATTCAAATTCAATCCGTTGAAATTGTTCCGATGAATGAGGTGACAGAGGAATTTGCTTTAGCGGAAGGCGAAGGAGATTATCGTTCTTGGTGGGATGCACACGAAAAA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 12747-12515 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYKT01000029.1 Geobacillus thermodenitrificans subsp. thermodenitrificans DSM 465 contig34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 12746 30 100.0 38 .............................. TTCTCATCGGGCTCGCCTATGCGGAAAATCGTGGGTGG 12678 30 100.0 37 .............................. TTTTATTGTGTATAACGAATTGTAAAACCGTTCTCCG 12611 30 96.7 37 .....................A........ ATCCGAGCCACACGAATTTCGATGTTATGGCCGGCTT 12544 30 93.3 0 ....T............A............ | ========== ====== ====== ====== ============================== ====================================== ================== 4 30 97.5 38 GTTTGTATCGTACCTATGAGGGATTGAAAC # Left flank : GAACCAACAACGGGACTTGACGAGACGAGGCAGCGGCGGTTGTTCGGACTGTTCGAGACGTATTTGTGATTATTTGAGGAAGAGGAGCGCCAATTACGAAACGAGGTGAACCAATGGAGACGAAGGAAGCGAAACAAGGAATGGAGTGGATCACCTCGTACGAGCGGCAAGGAATCGAGAAAGGAAAGGTGGACATCGCGAAACGGATGGTGGCGAAATGATGCGACGTGACGGCGATGGGTGAGCTGCTCGGATTGCTGATGGAAGTAGTGGAAAACAGCAAAAGGAAAAGGCTCATGTGAGGGCTCGAGGAAGCAAGAAGCGAACTTCGTTTGTCGTCGACCTCCAATCGTGCAAAAATCCCAGGGGGTCGACGACACTTATTTTTGTTGCTGATTCCCTACAGCCATCATGGACGAACATGATTGACGGAATTTTTCGACCGTGTTATTCTGAAGGTAACATGGGATGAAAAAGCTTGATATAACAGCACTTTTTGG # Right flank : GATACTGTAAGAGTATACAGTTTATCGCCATGCATTGATTGACGAAGTGGTGGCGGAAATCCGTCGGCTAAACGAAGAAAACTTCCGCGTACGCCAACATATCCCATATGTACACAAGTTCCAAAACCGGGAAGCATGGAACTGTTTAACGGCGATGGATGTCAATGAAATCAAAGAACATATTGCACCGCTCATTGTTCCGCTCAACGATGATGAACTGGCCAAGCGCTTTGATTTGCTGATGTATACAGTTGAGTTGGCGAAGTTGCAAACAAAAAATGCGACGAAGCCAATTCGGAGCATGATTCGCACCACAGAAGCGTTATCTAAGCTCGGATCGATTCCGCAAGTGCAGGAACAAAAATGCATCATCGAAAAGGTGTAGACGGAAGAGTTTTGGAGCGAAGCCGATAGTTTTGAATTGGAAGCTGTTCGCGAAGCGTTGCGCGATTTAGTGAAATTCCTTGAAAAAGAAACGCAAAAAATTTACTATACGAACT # Questionable array : NO Score: 8.74 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.06%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //