Array 1 4746-5045 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTJN01000037.1 Gloeocapsopsis dulcis AAB1 = 1H9 strain AAB1 k141_23308, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ===================================== ================== 4746 47 100.0 37 ............................................... TTCTAAGGCTTCAGTAGCCTTTGCCACACCTTCGTTG 4830 47 100.0 37 ............................................... CGCATTAGCATCTTTCGCCAGCTGCACACCTTCGTTG 4914 47 100.0 37 ............................................... TTCTAAGGCTTCAGTAGCCTTTGCCACACCTTCGTCA 4998 47 93.6 0 .....GC.T...................................... | A [5013] ========== ====== ====== ====== =============================================== ===================================== ================== 4 47 98.4 37 GCAGTCTGCTGTGCTTTTTGGGCTGCTGCGCGCACTGGCGGGATTGC # Left flank : CTGGAATTCCTTTGAGTAACACTGTAATTCCAGCTAATCCAGTGCCAATTTTAGTAAGTTCTTCTAATCCTTTTTGGTTCACTTTTTCGCCTTCTGTTACTCTCTGTTTAAGTTTATTAAGGTCTTGTTGAATAGCAGGTATTTGAGAAGAATTTATGTTTGTTGGTGATTGCTGAATTTGCTTAATTAAGGGAGATTGTTGAATTGTATTATTAACTATTTGTGGAATAATTGTTTGCTGTCTAATTTGTTCTGCTTTTGCTTGTTCTGCTGTGATTCCCGTAGCTTGTCGAACAGTTGTATTAATGAATTTTGTCAGTGCAGCTTCATCTTTAGTGATTCCAGTAGATGGCGTGATAGTTACCCTTGTGCGTGGTTGGTTGAGCGCTTGATTTGCTTTTGCATTAGCGGCTTGTGCCGTGGTGTTTGCATTGTTAGCTGTATTGTTTACAGTATTAGCTGTCTGCAATGCTTGATTGGTTTTGCTAACTCCTTTATCA # Right flank : CCGCATTAGCATCTTTCGCTAGTTGCACACCTTCGTCAGCAGTGCGTTGTGCTTTTTGAGCGATTGCCTTGACACCGCCTACAATTCCAAATAATTTTGATAAGTCAGCCGCGACTGAGTCGATGTACCTTTCTACGCCGTCAATCCTTGCAGGAAGAATTTCGACCACGCCATATAGTGCAAGTAGTCCCGATACTGTGCCGATCAAACCTAATACTTTGCCGAGTGCGTTATTAGCAACTCCACCAGCATTTGTAGCTAGCTGTGCAGCCCTGCCTGCTTCCCGTAGTGCATCCCCTGCTTGTTGTTGTGCCACAAAACCTACTGCTGCTGCTGCTGCAATTTCAGGTTTTAATAATTGCTTAGCTCCAGCAATAGCTTTATTAATAATTGCTTGCTCGTTTACACGCGGGATGCTATCAACTTTTCTTTCTAATCGGGCGATCGCAGCGTAAATATCAGCACATTCAGACATACTAGATCCTCGCTGCTAAATTATT # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGTCTGCTGTGCTTTTTGGGCTGCTGCGCGCACTGGCGGGATTGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 112990-113313 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTJN01000055.1 Gloeocapsopsis dulcis AAB1 = 1H9 strain AAB1 k141_38606, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 112990 37 97.3 36 ........C............................ AATTATTCGCTTTAGATTAATGAATGAATCAACGCA 113063 37 100.0 34 ..................................... GGACAAGCAACCATTAGTTGGAGGACCAAGAAAC 113134 37 100.0 34 ..................................... TTGCTAATCCTGCTTGTGCTGCTGAATTAGGATT 113205 37 100.0 35 ..................................... CGAGCCTTGCATCCTATGGAGTATGGCGATTTCCA 113277 37 86.5 0 ........C.....TA......A.............T | ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 96.8 35 GTAGAAATTCCTTTATTTGAAGGGACTAAATTGAAAC # Left flank : CTCTTTCTTTAGTTGCGTTAATTCTTGGCTGCATCCACTGTAGTTTAGGGTCTTTTTGTCGGACTCGTATAACTCTTTCCGTCTTGCCAAAAAACGATTGTACACAAATCTAGCGCAACCAATAGTCTTATTAATTAAGACTTCTTGGCTGTGGTTTGGGATAAGTGTAACTTTAAACGCTTTTTGCACAATAGTAATAGTAGAGGTGTTTATTTATACTCAATTTTATCACAGATCGGGCGGCTAACTCACGATTTAAAATCACGAGTGTGCGCCGCCCTATTATCAAGGAAATGTCCAGAATAACGGTATGCTGATGACTTCAGCGAATTAAGTTGTTTTGGATTCGCGCATTTGCTGAAATGGTTACGTATCAAGGAGTTCAAGTATATTCTTGTACTTGTGAAACTGTAATTAGTATAATTATGTTGGCAAATGCGAAAGCACTCGCGCACCCGAACCTTGAAAACCGCATACAGAAAAAATTTAAAACAGCCGCA # Right flank : TACCTGGTTTGCTTACACTGGAGTAGGAGCGTAACTAATTCAGTTGTAGACATCTCGGCGATGTCCAACTTTGTGAACCGTAACGCACTGCTTGTTAGTGTCAAAAGAATAAATGATTCGATAGTCCCCAACTCTGAGCTTAAACAAACCGCTCAACTCAGCACTCAGAGGTTGGGGAGTCAAATTATCAAGATTTTCCGAAAGCCAACGGATTTTATTCAGGATACGTTGTTGAATAGTTGAAGTAAGCTTTTTTAAGCCATCTGTTGCTTCTGACGTAAATTCAACATAGTAAGCCATTACCAGTTCAAGCCCAATTTTTTTGCAATTTCCTCAGCAGAAATCCCACGCTCTCCAGCTTGAGTACGATGGAAGGAATCAAGGAGTTGCTGCTTAACCTCCGGCTTGATTTCTTTCCCTTCATCGGGGTCAATTAGCAAGGACTGGATAGTTTCAGCAACGGTTTCTTGAATTAGGAGTTTGAGTTCTTCAATAGTCAG # Questionable array : NO Score: 8.90 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATTCCTTTATTTGAAGGGACTAAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 574-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTJN01000008.1 Gloeocapsopsis dulcis AAB1 = 1H9 strain AAB1 k141_4840, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 573 37 100.0 35 ..................................... CGCTGCAACGTGGATATAAACCCTTCTCCTTGGAT 501 37 100.0 34 ..................................... CTTCCTGCTGCTGAGTTGGTAAAAGCTTCTCTTT 430 37 100.0 36 ..................................... CTTAAAGTCGTGAAACCTAGAACGTACATAGTCAAC 357 37 100.0 34 ..................................... TTTTCGCTGCACAGTAACATTTGAGATTATCAAG 286 37 100.0 35 ..................................... TTCATTTGTAGCTTGCAGTTGTGTTGCTGGCTACT 214 37 100.0 36 ..................................... ACTGCTGCTTCCCCTGCTGCAAGTGCTGGTCTTGTT 141 37 100.0 35 ..................................... AAGAAATACACTAACCGAACCATGAAAACCAAAAA 69 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 8 37 100.0 35 ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC # Left flank : ACAAGCGTCGCACCAAGATTCACTCGATTCTCAAATCTTACGGTCAGTGGGTACAATACAGTATTTTTGAATGTAACTTAACTGATAGTCAGTATGCGAGAATGCGATCGCGTTTATCTAAAGTTATCAAAGCCGAAGACAGCATTCGATTCTACTTTCTGTGTGGATGTTGTCAAGGTAAAGTAGAAAGACTTGGTGGAGAACAACCACGCGATGAAACAATCTTTTTTGCTTAGGCAAAACATTATTTGCGCGGAAGGGTAGCTGTTTATCCCAGCTAGACTTTAAAAAAGTCACGAAAGCTTTTATACAGAAGCCTTACAAGTCCCTTTATCCTATCTTTAGATCCGCGCAACTTCTCAAACGCTTATCAGATATAACTTATCGCTTGTAACCCCACTTATTTTATCTGTGTTTTTGACTTTAAATGCTATAGTTATGACTATATCGCGCAACTGCACCATGAAAACCACATACTGTAAGCCTTTCAGCTACCTGCG # Right flank : CGCAAATCTCCCATTCACGCGTTTTCTGATCAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 57022-59865 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTJN01000057.1 Gloeocapsopsis dulcis AAB1 = 1H9 strain AAB1 k141_41339, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================================================================================== ================== 57022 36 100.0 35 .................................... TCATAAAGCGAACAGCCATCCATAACGCTTCTTCA 57093 36 100.0 41 .................................... TCTTGTCTGCTGTTTCTCTTTACGTAGCGTCTCATTTTCGT 57170 36 100.0 43 .................................... AAAACTTCCGGTAGTGTTCTGCTATCCTGTCGATATCTTTATA 57249 36 100.0 41 .................................... TTGATGTAGCGTTTCATTACTCGTTCCTTGTGTGTATGTGT 57326 36 100.0 40 .................................... GGAATAACTCCAATATCTAGCAACTTGTTTACAGTTTGCT 57402 36 100.0 36 .................................... TTCAGTTATTTCACCATCTTCGTACATTGCAGAGAT 57474 36 100.0 35 .................................... ACAACTAACTACAAGTTTGTACACTACTACAACAA 57545 36 100.0 38 .................................... TGTTCATAACACGCTTGAGGTACGCGACCAACTGCGGG 57619 36 100.0 39 .................................... AACAAAGAAGCAACGCAACGCGGTGTATGCAGTACGTAA 57694 36 100.0 36 .................................... TTGAAGATGTAAGCTGCACCTTTCATGTGTTGTCCT 57766 36 100.0 42 .................................... CTTAGACATTGTTAATGCCATCGGTTCTACGGTGGTAGTGGG 57844 36 100.0 39 .................................... ACTTACCCTTCTTCACTTTCCCTGATTCATAGGTTTCTT 57919 36 100.0 37 .................................... TTGAATCAAAGCTTGCAGATCGTACCCGCAGCGGTGT 57992 36 100.0 38 .................................... AGAGACATGATTTTATCCAGCCTTGAGATTGCTTCTGC 58066 36 100.0 34 .................................... TTCAGCTAGAGCTAGACACAGCCGCTAGACAGGA 58136 36 100.0 44 .................................... TCCTTTCTTCTGCTTTGTCTTCGGTAGATACTGCAATTCCTCTA 58216 36 100.0 37 .................................... GTACTGTGTCAACCATGGTATGTCCTTTTCGGCTTAG 58289 36 100.0 46 .................................... TCTAGGGCTATTTTGCGAACTTCGTTGTTACGCTTTTCTTTATTAG 58371 36 100.0 52 .................................... TGACTCCTTCCTTCTTCCTTTCTTTTTCAAGCACAAAGCACAACGACCTTAA 58459 35 97.2 38 ..........-......................... TCAAAATTTCAGCGTCGGGCGCGGCGGAAAATTCATCA 58532 36 100.0 41 .................................... GACGACCATGTTTTGTAACGACTCGTTGAGTTTCTCTAGCA 58609 36 100.0 40 .................................... AGAAATGAAAGACACATTGGAGTACCGCAACGATTGTCAA 58685 36 100.0 36 .................................... AATTCTTCAGCGAATTCTACTGGTATGTGCCAGGAA 58757 36 100.0 36 .................................... AAAAGACGCAAACAGGATGTGGGGAGAGGTAGCGGA 58829 36 100.0 44 .................................... CTTTGTTGCACCTGGTTTGTTGCCAAATCTAAACACGTACTTGA 58909 36 100.0 53 .................................... TTGACAGGTGTAGAACTATGCTTTCTTGGTGGTGTTCCAGCACAACTGGAAAT 58998 36 100.0 38 .................................... ATGGCGTCAATCTGAGACGGTCTTAAACCAGCAGTTTG 59072 36 100.0 42 .................................... TTGTCATCACCAGCTAGCAAGTTAAACACGTCATCTTTAAGA 59150 36 100.0 35 .................................... CTTGTACGTTTGATGTAGCGTCTCATTTCTAGTAT 59221 36 97.2 36 .....................G.............. AATCTTTTCTATTAGGAAAGATGAGCAATGACGGTT 59293 36 100.0 37 .................................... CTTCAACGAACTAAGCAGAGCATACGAAGCTAGGTTA 59366 36 100.0 46 .................................... TTCATCTGTTTTCCTCTGTTTGTTGTGACCATTCAGCAGCCCGTAA 59448 36 100.0 36 .................................... TCCATGTCACAGAACGGTACCTCTTCGAGTATATAC 59520 36 97.2 42 ....................A............... GTGCTTTGGCATTTCCTTCTATCTCCTGTTCAGCTATGAGAA 59598 36 100.0 45 .................................... GTCTGTTGAAAACTAATGAGTGCCTTGATAGCGTAGCCTAGCACG 59679 36 97.2 115 ........................G........... TCTACTTCTAATCAATCTAGGGAACGATAGGAACCGGAATTGTGACGATTAGGAGGGAGTTTAGTTGAATGTAGTCCTTTACATCAAATTATTCAAGAAAATGATGTAGGAACTA 59830 36 88.9 0 ...............T...T...........C.C.. | ========== ====== ====== ====== ==================================== =================================================================================================================== ================== 37 36 99.4 42 CTTCCCATTAATAGGGGAAATTAATTGAATGGAAAC # Left flank : CAAACCTTACCTTATCCGCTAAATTTAACACCGTCAAATGTTGCTTTACGTAGTAACCTACGATATTCCTTGCGATCGACGTCGAAAAAAAGTTTCTGATTTATTAGAAGGATACGGACAACGAGTACAGTACAGTGTATTTGAGTGTGTTCTTACTACTAATAAGTATTGGGAATTACGCCAGCGCTTACGCAAGAAGGTTAAGAAGGATGAAGATAGTGTTCGTTTCTACCCTTTGTCTGGTCATACATTACCGAAAGTAGAAGTCTGGGGAGGATTACCAGTTGTGCAAATACCTGGCTCAGTTATTGTGTAGAGCACCGCGAACAATAGTGCAAATACCCAGAATAATTATTGTTGCGATATAACCCTCGATTATCTGTATGATAAGGGTTAAGGGAATTTTATTTCTTTTAGCTTATGCTTCTGTGTAGCTCACATCAACATCCCTCGTATTTGGCTATTGGACACCTTGCAAAATAAAGGCTTTAATATAAGGG # Right flank : TCAG # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCCATTAATAGGGGAAATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 49368-48597 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTJN01000077.1 Gloeocapsopsis dulcis AAB1 = 1H9 strain AAB1 k141_55298, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 49367 37 100.0 37 ..................................... TACTAGGCATAGCGGGATTAGAAAGAAAGATTATGCC 49293 37 100.0 36 ..................................... GCGATTATGGTGATCGGTCAAAAACTGACTGTCGCC 49220 37 100.0 34 ..................................... AAATCGCTGCAAGAACTTCTTAAAACAGTCGGTT 49149 37 100.0 40 ..................................... TTGCGATCGTGCGGAATTAATCAGCAATTGAATTTCATCC 49072 37 100.0 35 ..................................... GCTTAGGTGTGGTGGTATTACTGCCCTAGCTTCTT 49000 37 100.0 35 ..................................... GAGGTTCGGCTTTCCTGCCAGCACAAATAGCAATT 48928 37 97.3 36 ...........A......................... TTTACTGTACCTCAACTCTATACTTTCAGAAGAAGA 48855 37 94.6 40 .........................C.........T. TCTAGCCGCCGCTTATGGCAAGTGCGATAGAGGTACCCAT 48778 37 100.0 36 ..................................... ATATAAAGCAGTGTAGTTTTCTGTGTATAAGTTCAT 48705 37 100.0 35 ..................................... TGAGTACCTAGGCTTTCAAGTATCGGCAGTCGTTT 48633 37 94.6 0 .....................G....A.......... | ========== ====== ====== ====== ===================================== ======================================== ================== 11 37 98.8 36 ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC # Left flank : TCATCTGATTCCGGTGAATTTGCTGAAGG # Right flank : ACTGTTTTAGATCTTCCTTGATTTTTGTAGTATTTTTCAAATATAAAAAACTCAATCAAGGATTGAGGCTATTAGAAAGATAAATAATTTTCATTCTAATTCTACCTAATAAATTTGGGGTGATTGCATAATAGTATTAACAGAGAAATTAGGTAAAGATATGACATCAGAAGAAATTCAAAAAGCTATTGAAGGGACGCTAGCTGTGCAAAGGAAACTACAAAATACGCAGTTGATAACGAGAGAAGAAATAGCAGATTTAAAAGAATCAACTAGAAATCTAAACGAAATTAGCCAGCGCCACGAGCGTCGCATTGAGCAGTTGCTCGGTTATTCAATAACTGGAGAGGGCGATCGCTTAGATTTGTTGCAGCGATTAATGACTCTTGAGCGTAGAGTTTCGAGACTAGAACAGGAAGATAATGGAGAATCATAGTACAAATTCCTTCTATAATTGCTAAAGCTGGAACTCTTCGGGGTGAAACAGCTTTAATATTTCA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //