Array 1 2094-1913 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCIF01000006.1 Thermogemmatispora tikiterensis strain T81 A4R35_scaffold00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 2093 37 100.0 35 ..................................... GATAAAACCGCCACCAGATACCGCATACCAATTAC 2021 37 100.0 35 ..................................... CTCTATACGCTGCCGCGCACGCGGCAGCTGTCACT 1949 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 100.0 36 GTCAGAAGCAGTGAAGCGGCCCGTCTGGGATGGAAAC # Left flank : ACAATCTTAGCGCTATTTGACGGACCTAATGA # Right flank : GGCGGCAGCGCTCTCGCTCTGCCGCCAGCTTGTTTGTCAGCATCAGTGAACAGGCAGCCAGCCGCAAGGGGCACCGGGAGCAGCCGAGCGAGCGCTGGGGGCTGGCTTGGGCCTGGCAGGCTCTGCCGGGAGAAGGAGCGGGTTCCCCCTGACAGGACCGGTGCTTCCGCAGCCAGCACTGCGCTCTCTGGTCAAGCTGCAGCACTGTCCTCAGCGTTGGATGGGCACGCGTGCGAGTCTGCGAGCCAGTGAGCTGCAGTGAAGGGGAAGTAGCTGTCCGGTACAAGTGATCCCGACAATGGGCAATGCCGACGCTTCAGCCCAGCATGCCCCTCATAAGGGCATAGGGGAGGGGATAGGCCGTCAGGATGGGAATACGCATGGATATTGAGCGGCGTGATGAAAGTCAGAATACCCAGCGGGTCAGCCTTTCTGAGCATCCTCTTGCGATCTGGAAGCCGGCAGGAAGCCAGTGGTGATCCCCCTTGTCTTCCGGCGGG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAGCAGTGAAGCGGCCCGTCTGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.50,-4.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 9706-9148 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCIF01000002.1 Thermogemmatispora tikiterensis strain T81 A4R35_scaffold00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 9705 37 100.0 40 ..................................... TCAGCTTCTCAACGGGTGGGTACTCCCAAAAGTTTTTTGG 9628 37 100.0 37 ..................................... AGGATCATCATCAAATGTCGGGCTAGCCAGTCGCAAC 9554 37 100.0 37 ..................................... AAGAGATACATACCTGGGCCGGCCACGCGCCCGCTCA 9480 37 100.0 35 ..................................... TATCCCTCCGAGGCGGCAAGCAGCACCCCGCCTGC 9408 37 100.0 38 ..................................... AGAACCGCCAGGTTGAGTAGCCATCGCGGTTCCCTATG 9333 37 100.0 36 ..................................... AGGAATCCCTCCCGGTACTCATCAAATGCCTCCTCG 9260 37 100.0 39 ..................................... CGCAGGAAGAAGGTTCGCCGATCCCCCGTTGCCGGGTGG 9184 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 8 37 100.0 38 GTCAGAATCAGTGAAGCGGCCCGTCTGGGATTGAAAC # Left flank : GGAGCTGCTTCAGACCTAGCAGCCCCTAGCTCTTTCAATCCCAAACGGGCAGGACCGCTGATTCAGACGGTACCCCTTCTAAGATAGCATCTGGAGCGGCCTCCGTCAAGCAGATTCGATGATCCCCAAAAAAAACGGTCACTAGTGACCGCTCTAGAGCGGTCATGATGCCAGGCACTTTGCCACTCCGTGCACTTCAGAAGCCATTCCGTGGTCGGGCCTGGGGGCCAGCAGCGACGGACCGTTTCCAGCGTGGAGAGGAGACAAAGGGCGGCTCCATCGAGGAGACGCACGAGGAGGGGAACATGCCTCTGATACCGTTGTTGTAATGAGATGCTCGTCACTTCGAGGATCGCGGCACCCGGCTTCCCACGCAGCGATCCTCGAATGGCTTTCCAGGCCGTCTGAGGGCCAACATGGCTGGCATGATGACCGCTTTTTTGGGATCATCGAAAAAGCTTGACGGAGACGGCTCCAGATGCTACGCTAGAGGGGGTACC # Right flank : GTGAAGGATAACGCCATTGACAGTGCAGCGAGAGCTGGGGGGCTTGCTTGAGCCTGGCAGGCCCTGCCGGGAGAAAGAGCGGGTTCCCCCTGACAGGACCGGTGCTTCCGCAAAGGAGACGATATGGGGAAGCACATGATCTGTCCCAACTGCCAGGGGACCGGCTTCAGTGCTGATGTCACCTGTCCCCAGTGCCTGGGCACCGGTTTGTTGAAGGAAGGTGACACCTGCAAGATGTGTGTGTGGTGGCGCTGGCGAGGTGGAGGTGAGATGGCCAGCTCCTCTCACGCTGGACTGGACCAGCGCAAGCTGGCAGGAAGCTTGTAACACGCTGGCTCAGTTGACGATGCCCGGGGGACGCCCATCGACCCCGGCATCGTTGAGACGGTCGTGCTGCTCAATCTCCTGGGCTTTCCAACCGTCCAGTCGTGCGAAGGCCATCTGGATCATGGCACGGCCTCTCCCTGGGTCACGGTGGTCGATCGGGCGCAGCAGCGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAATCAGTGAAGCGGCCCGTCTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : NA // Array 2 402847-401924 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCIF01000002.1 Thermogemmatispora tikiterensis strain T81 A4R35_scaffold00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 402846 37 100.0 36 ..................................... GATACTCTCGCCGTGATCGAGAAACAGGGAGAGCGC 402773 37 100.0 36 ..................................... GCTTGCTGGCGGTGAGCGCCGGACAGTCCGGCCACA 402700 37 100.0 41 ..................................... TCCATAATAGGCGAGGTCGCCTTCATCCGCAGGAGTCGAAC 402622 37 100.0 38 ..................................... GGCAGCATTTTTAGAAGTAGGCATTTTGGGAGTGGTAC 402547 37 100.0 37 ..................................... CTTCAGCAGTCTCCTCAGCAACTTCAGCAGCAGCAGC 402473 37 100.0 38 ..................................... TCAGCATTGCTCGCCAACACCAAGAGGGCCAGATGTTC 402398 37 100.0 35 ..................................... CCGATAGATCTGCCTCATCTCGTTCTCGGTCATGC 402326 37 100.0 36 ..................................... TCACGAATGCAGCCAGCGCCCGAGTCGGGTGCCAGC 402253 37 100.0 35 ..................................... CTGTAATTGTGCGATTTTTGCAAGTGTCTGCGGAG 402181 37 100.0 35 ..................................... TAGCTTATTTGTGCTGTTGTCGTTTTTTGTGGCAG 402109 37 100.0 37 ..................................... CTCGGGCTCACTTCCTACCACGTCCGAGAGCAGCATT 402035 37 91.9 38 ......................C.T...........G AGGAAGGCGATGTCCTCGGATGATCGACACATTTGTGC 401960 37 89.2 0 .......G....T.........C.T............ | ========== ====== ====== ====== ===================================== ========================================= ================== 13 37 98.5 37 GTCTGAATCAGCGATCCTGCCCGTCTGGGATTGAAAC # Left flank : CAGAGTCAAGGGTGCTCGGCAAGGGAAGAGCTGGTTTGATCAGAGGGAAAGCCGAGCGGCCAGCCTTTTGCGCCACTGAGAGCGAGCGAGTTCTTTCTTTCTGAATGAGAGGCCCGGGCGACGCTCCTGTACGAGGGAATCGGCTGCGTGCTGGCTTCCTGTTCTTAGAGGCTCTGTTATGCCGCAGGAGCCTATCGCTGGTCAGCCCGTCAGCCAGCAGGCCGACAGGCAGGTTTCCCAGGCTCGGATGGTTATGCCTGGTTTTATGGATACTATTCGATAAAACCATATTTTACATTTTTACCTGATATACTTGTCGCTTCGAGGATCTCGGCTCCCGACTTCTCACGCAGCGATCCTCGAAAGGCTTCCCAGGCCGCCGGAGGGCCAAAGTGGCTGGCATGATTACCGCCTAAAAACGGTCACTAGTGACCGTTTTTTTGGGATCATCGAATCTGCTTGACGGAGGCCGCTCCAGATGCTATCTTAGAAGGGGTACC # Right flank : AAGCGGTAGCTGCATCACAAGCATAGCCCCCAGCCAGACCTACGAGTCCCCTCGTCGTCGCAGCGCGCCACGATACCAACGCCGACACGCGCCTTCCCAAGGCGGATGAAGCACCGGCGTTCGTCGATCACCCCGACGTTGCCCGGCGCTTTCGTCTACCTTCTCACCCCATCCAGTGCCGCGATTTCTGGCTGCTCCGCTAATGCAACGCGCTGAGCCAAGCGAGAAGCAGCAGGAAGACCTCCCCGATCACGATCGACCCCACTCCCCGACGAGAAAGCCCCGCCGAAAGTCTCTGGGAGAGGCCTCCACTTCTCACCGCCAGTCTCTGCGCCAGGATCTGCACGAAGCCCTGACTCATCTGAAGACGGCGGTGAGGAAGGCTGGTTCCGGTAGATAGGCAGCTGTGAACGAAGCAACAATGTCACCGTGAAACGGTTCATAGCTGCCTGCGGCTGCAGATGCTAAATGAAGCAGTGAGAGTGCCCCAAAGCATACGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAATCAGCGATCCTGCCCGTCTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 3 426357-427347 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCIF01000002.1 Thermogemmatispora tikiterensis strain T81 A4R35_scaffold00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 426357 37 100.0 37 ..................................... TCAATCCCTGAACGGGCTTCTCCCAGCTCGTAGGCCC 426431 37 100.0 35 ..................................... TTGTCGAATTGCCCAGTGTCAACACCGGTACACTA 426503 37 100.0 36 ..................................... TGGAGGGTGGGGGGGTGGTTAGTTGTCGAGCAGTTC 426576 37 100.0 39 ..................................... CTGAAGGAGGGGGCATTTCATCGTCTGGCCGGCATTTTG 426652 37 100.0 36 ..................................... TTCTCAATCAGCTGTCGGTACTTGAGCACCTCTTGA 426725 37 100.0 36 ..................................... CCCTGCGGAGACGCCCTGTCTGCTCGTAGTTGTGAA 426798 37 100.0 37 ..................................... TTTTTTTTGCGCCTGCCCCCCCAAGGGGGGCAGGAAC 426872 37 100.0 35 ..................................... CGTATATGAGGATGGAGTAGCGTATATGAGGAAAA 426944 37 100.0 39 ..................................... TCGACCCACTGTTGTCCGGGCCGGCAGAGCACGACCCTT 427020 37 100.0 36 ..................................... TGCATGCCGTCTATGACGGCGTGCACGCTCTTTTTT 427093 37 100.0 40 ..................................... CAGGAGCAGAGGATGACCCGCGCCCCCGCCGCAAGAGCCG 427170 37 100.0 37 ..................................... GCATGGCTGGCAGAGCGACATGACATGGTCAGATCGG 427244 37 100.0 30 ..................................... AAACTGTGTCAACAGCCAGCCCCAGCGGCG 427311 37 81.1 0 ...............G.........ATT..GG.C... | ========== ====== ====== ====== ===================================== ======================================== ================== 14 37 98.6 36 CTCAGAATCAGAGAAAGAGCCCGTTTGGGATTGAAAC # Left flank : AATGCGCTCACTGTCTGCCCCTACCTCTGCCTCTGGAAGAGCTATCTCCACCAGGTGTATCCCCAAGGCTTCTTGTTCTGCGGTCGGGGATGCACTACGGGCCTTGGAGCTGGCAGTGTAGGCTACGACCTGTCCTGTCCTGTGGGAGTGGTGGAAAGCAGGGACTATCACGGGAGTAGGGGAAGCGGTAATGAGAACGAGTGGCTGCGAAGGTTGACCTGATTCGGGAAGTTGTAGCCATACCTCAAGATAGATATGATATATGGTATCAAGAATTGAAAAAATATTTTTTGCTCCTTTGATAGGTTTATGCTTGTTGCTTCGAGGATCTCGGCTCCCGACTTTCCACGCAGCGATCCTCGAATGGCTTTTGACGCGCTCTGAGTGGCAAAGTGCCTGGCATCATTACCGCTTAAGAGCGGTCACTAGTGACCGATTTTTTGGGATCATCGAAAAACCTTGACGGAAGCCGCTCCAGATGCTATCTTAAGGGGGGTGCC # Right flank : CACAAGGATTCTCAGGCTCAGAAAGAGGAGGCAGGCCCGTCTGGGTCTGGGGCTGAGATCAACAGAAACAGAAAGAGGAAGCTGCGTGCCAGATTGAAGAGGGGAAGCACCAGCAGAGCAGAGCAGACCTTGAATAGCGCGCACAGACTGAGCACCTCACTCACTCGTGGCCTGGCCTCATTCTGGCAGCTGCTCTGCTCGTCTACGGCCTGCATGGATGTACGGAAGTGCCGTTGATTCCCTGCATACCTCAGCTCGGCCCGGCTGGTCGCAAAGGCCCACTCGCCGTGCTCATCTGCACCCCATCGGGGTCAGCTCCTGCTCCAGGAAGCCCAGGGGCATGAGCAGATTAGCCGGAACCACGACGAGCAGCTATTTCAGCTCTCCCCCGGCCTCAAGAGAGGTAATAGTGACCGTGCTGCCGGAGCTGGTCACCTCGATAAGATAATAAGGATCTGCTGGATCAAAGCCAGCACTGGATAACCTCAGCTTGTTACCCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCAGAATCAGAGAAAGAGCCCGTTTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 4 1121380-1120219 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCIF01000002.1 Thermogemmatispora tikiterensis strain T81 A4R35_scaffold00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1121379 37 100.0 38 ..................................... TTCTTCAGGGGCGGCTACTGCGCAAGGGGGGTCTACTG 1121304 37 100.0 36 ..................................... AGCAGAGCGTACTGCTGCTCAGTGGGTCGGTAGATG 1121231 37 100.0 39 ..................................... TCAAGCAACAGCAGCCTGGCTGACCTGCACCAATACCAG 1121155 37 100.0 38 ..................................... GCTGACGGGTGAGCGGTTGACTGTCCGCCAGGCACAGA 1121080 37 97.3 38 ......................T.............. GGTTCCAGGCGCCGGCCCGGGTCAGTTCTCCTGACCCT 1121005 37 97.3 39 ......................T.............. CAGTCAGCGCCCCGCCGACAGATGCTGCAAGACGTGCAC 1120929 37 97.3 40 ......................T.............. CATACAGCAAGATCTCAAGCGGAATGCGCGGCACGCGATG 1120852 37 97.3 37 ......................T.............. TGGAGACAATGGACGCTTCACCATCCGCCGGCATTAG 1120778 37 97.3 38 ......................T.............. GAACAAGGGAGATAAAAAGGGAGGGAAAGATGATCAAA 1120703 37 97.3 36 ......................T.............. CCTTCGCTACTCATGCAACAGACTGCACTATTTGCG 1120630 37 100.0 40 ..................................... TCACATTGGGGTGAGCGTATTCCACTAGGTAGCCGTCCAG 1120553 37 100.0 36 ..................................... TGAGCAAATTCGCGAGAGACTGGAGCCGCACCATGT 1120480 37 100.0 39 ..................................... GACTCAGGTGTTTGGGTGGGACACGCCAGAGGAGGCTAA 1120404 37 100.0 39 ..................................... ACCTGTCAAGGTCGACTGCAGAGGTAGTTGAGGAGTTGC 1120328 37 100.0 36 ..................................... TCTCTTCCTCCTCTCGTAGCTCTTCCCCGGCTCTGA 1120255 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 16 37 99.0 38 GTTGCAGAGGGGACGATCCGCACGAGGATACTGAAAG # Left flank : TCCCTCAGTGAAAGGGACGGACCAAGGAGGAGATGCGGAGAGCATCCTGGTCTGACGAGGCATTCACCAGCAAGCTCTTACGCAGTATATCACACGTCAAAAAGGGAACCTCGGGCTTCAGTAGGCAGAGGAGAGTCGGGGTCGAGGCCGAAGGCTCCTCCTCCGTCAAAGTCACGGGCCGAGCCGAAACCCCTGGCAATGAGGGCCGTATGAGCGGTCGATTCGAAACTCTCCGGGGCCGGCGACCAAATGCGGTCAGAATCTGACCGCATTACCGTGAAAGCGCGCATGTTTTACTCTTTTTATATGATAATAAGACATATACACTCTCGAAACTCGCCCCTTGCGGATTGCAAAAAACGAGTTTCGAGAAATGTCGTAAGACGATGTATTTTGAGAGGGGGAGGGAGAGAAAAACGAGGCTCTCAGATGCCAAAAATGGGGCCTCAATCGTTAGAAAACAGTAGAGAACCATCTCGGACCCCTTTCCGCCTCCTGCG # Right flank : GTCAATGGGCCGCAGAAGCGGTGCCAAAGCTACCACAGCCCATTGAGCTACACTAGCGCATAGGGCGATCTTTGCCGTACCAGTGAAGTGTGATATCGAAATTGGCCTCGCTGCCGGCTGACGCCAGAATGGCACCCATTGAGGCGCTTAGCTTGATCCCAAAAGCTATTTCAACTTCATCGGGCTTGAGGTCCAGATTGTGCAGCTTGACCGCAACCGCCTTAATGGCTGGCAAGACCTTCTGCAGCGCTTTCTCCAGGGTTTCCGGGGCCTGCTCTGGCCTCGACAGCCGGCGGGCGACTGGTACCCGCTCGCCGCCTTCCGGCTCCAGCTCCTCGACCTCGATAACCACTTGCCCGCCATCCTCCAGGGGGAAGGCAATCAACTTCTTCATGTGCTTTCTCTCTCCTCATGCTTCTTTCTTTGAGACTGACCAGGTTGCCAGGGTTAAACAGCGTCCACTCTCGATAGAGATGAGGAACCCTGCAGCAAGCCTTGCA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGAGGGGACGATCCGCACGAGGATACTGAAAG # Alternate repeat : GTTGCAGAGGGGACGATCCGCATGAGGATACTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 5 1122331-1121926 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCIF01000002.1 Thermogemmatispora tikiterensis strain T81 A4R35_scaffold00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1122330 37 100.0 35 ..................................... GTCAAAGCGATCGGAGAGAGCAGGGGCAGCTCATG 1122258 37 100.0 37 ..................................... ATACGATCAGTATCAAAAGGCGGTGGCACAGGGATTA 1122184 37 100.0 37 ..................................... TTGACGAAGCCCGGGAGTTCGCTCCTCGATTCGCTCA 1122110 37 100.0 36 ..................................... AGTCAATGGCTTGGCTGGAGGAGATCACCCATCTGT 1122037 37 100.0 38 ..................................... GGCCTGACTGGCGGCTTGAGCAGTGGGCAGGGAGACAA 1121962 36 83.8 0 .....................CC........-.T.CC | C [1121932] ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 97.3 37 GTTGCAGAGGGGACGATCCGCATGAGGATACTGAAAG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGACGATCCGCATGAGGATACTGAAAGATGCGGTGACCGTGGCGCAGTCCGGCAGTACCGCTA # Right flank : CGCTTCACGCTCTACGCTCTCCTCTTTGGGGCTGTCCTCTTTCTTCTCCCTCAGTGAAAGGGACGGACCAAGGAGGAGATGCGGAGAGCATCCTGGTCTGACGAGGCATTCACCAGCAAGCTCTTACGCAGTATATCACACGTCAAAAAGGGAACCTCGGGCTTCAGTAGGCAGAGGAGAGTCGGGGTCGAGGCCGAAGGCTCCTCCTCCGTCAAAGTCACGGGCCGAGCCGAAACCCCTGGCAATGAGGGCCGTATGAGCGGTCGATTCGAAACTCTCCGGGGCCGGCGACCAAATGCGGTCAGAATCTGACCGCATTACCGTGAAAGCGCGCATGTTTTACTCTTTTTATATGATAATAAGACATATACACTCTCGAAACTCGCCCCTTGCGGATTGCAAAAAACGAGTTTCGAGAAATGTCGTAAGACGATGTATTTTGAGAGGGGGAGGGAGAGAAAAACGAGGCTCTCAGATGCCAAAAATGGGGCCTCAATCGT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGAGGGGACGATCCGCATGAGGATACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 6 1842928-1842296 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCIF01000002.1 Thermogemmatispora tikiterensis strain T81 A4R35_scaffold00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1842927 37 100.0 39 ..................................... TGGCCAGACGTTCTCGAATCCGTGCCATCTGGTGATTTG 1842851 37 100.0 35 ..................................... GCTCGAATCACCTCGGCTTGCTGCTGTAAGGTAGC 1842779 37 100.0 39 ..................................... TGTTGACGCTTGCCACAACGTTGTGGCGGTTGAGGGTCT 1842703 37 100.0 36 ..................................... GCGCCGCCCTCACATGCGGAGTGGTCAGCCAACTCC 1842630 37 100.0 35 ..................................... AACGTCTCGGCTCTCGCGCAAGAAGCGTCAGATGA 1842558 37 100.0 37 ..................................... TCGCCGGAAAGAGTGAGCCGGGCCGAGGGAGCGGCTC 1842484 37 100.0 39 ..................................... ATTGATCCAGCTCTACCAGGTGCCAGCCACTCTGGTCAA 1842408 37 100.0 39 ..................................... GTTTTGGATTTTGCCGGAAGAGGTGTGGCGCGAGGCATG 1842332 37 97.3 0 ...................A................. | ========== ====== ====== ====== ===================================== ======================================= ================== 9 37 99.7 38 GTTGCAGAGGGGACGATCCGCACGAGGATACTGAAAG # Left flank : ACTGTTCTCCTTTCTTTTCTTTTCTTTTCTTTTCTTTGATGTTCCCTTCCCTGTGTTTTGCTCTGGTGGTAGTGATGAGCTACCTCTGCGGTGCTGTGTGCTTTTCCCTGGCTGCTGCGAAGCGACCGACCAGACCCTCCAGGGTCGTCTTCCGGTCGGCATGGGAAAAGAAAGGAGCGGAACCCGATCCCCCTCTGATGAAGCCCTTTTGAGAGCCTCTTTCGAAACTCTCCTCGGTCCCGCCAGAAATGCGGTCAGATTCTGACCGCATTTGGCTGGTTGGCCGCATGTATTACCTGTAAAATATGATAGTCTGTGCTGATGCTTTCTCGAAACTCGCCCCTTGGACGTTGCAAAAAACGAGTTTCGAGAAAGGTCGTGATCCGATAGATTTTTGCGAGGGGGAGCGGGAAAAAACAAGGCTCTCAGAGAGAAAAAATGGGGCCTCGATCGTTATAGACTATGGAAGAAGTATCCCGGGGCCACTTACGTCGGGCACG # Right flank : GAGCAGGTGTCGCTGCTCGTGGGCGGCGTAGAGTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGAGGGGACGATCCGCACGAGGATACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 7 2079807-2079052 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCIF01000002.1 Thermogemmatispora tikiterensis strain T81 A4R35_scaffold00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2079806 37 100.0 37 ..................................... ATACAAAGACAACTGTGTATGCCGTATATACATTTTT 2079732 37 100.0 34 ..................................... AGCCTGGCTGCAATGCAACCTCTATCTGCATCTG 2079661 37 100.0 37 ..................................... TCTTCCACGTGGTGGTTTACCAATTGCTCTCATTTCT 2079587 37 100.0 38 ..................................... TAACACTCGGGGCCGCCCACCAGGCTCTCTCTAGAAAG 2079512 37 100.0 34 ..................................... TACTGGCTGACGCGGGATGTTTCCATCCCCGTGG 2079441 37 100.0 35 ..................................... ACAAGTGCTCATCGGCGTTCGTGATAGTGATCTAC 2079369 37 100.0 39 ..................................... CATACTCGACGCCGGGGAGACGGCAGTCTGGATGGAGTG 2079293 37 97.3 37 .......G............................. TTGCAAGAGATCCAGGCTTCAAAGCCGTTCAAGGCTG 2079219 37 97.3 36 .......G............................. CAGGCACATGTGGGGGCGACGTCTACGGGGGAGATG 2079146 37 97.3 21 .........G........................... TACTATCGGCTGCTGGACCAG Deletion [2079089] 2079088 37 86.5 0 ............TG...A..T..........C..... | ========== ====== ====== ====== ===================================== ======================================= ================== 11 37 98.0 35 GTCAGAACGCCGCTCAAGCCCGTTTAGGGATTGGAAC # Left flank : TGGGGATCGATCTTGCTGAGGCGCGCAGGCAGATGTTGCGCGTCATTGGCAAAGGAGAATAATGCAACAGGATGGTGAGGTGATGCGCCCCAGTTCCTGCTGTGAGGTCTAGTGCAGGGGCACCGGTGCGAGAATTCAGGCCCTAGATCCCATATTGTGGCCTGGTCCAGTCGGTGGTAGACCGGCACGAGCTGCGTACCAAACGAAGCAAGGGTCCTGCTCTCTCCTCTGGGCTGCCCCTTCCGCGTGCGCTGTTATCGACTCCAGTACCAATTTCACCATTATCAACAAAAGCTGTTTTTGCTGCTGTTGCTGTTCGCTTCGAGGATCTCGGCTCCCGACGTTCCACGCAGCGATCCTCGAATGGCTTTTGAAGCCGGCTGAGGGCCATATAGCCTGGCATCATTACCGCACGAGAGCGGTCACTGATGACCGATTTTTTGGGATCATCGAAAATGCTTGACGGAAGCCGCTCCAGATGCTATCTTAGAAGGGGTGCC # Right flank : AAGGGATTGAAAGAGAAAAAAGTAGGACCAGCCCTTCCCCCGGAAACGATGCCTGGAGAAGGGCTGGTACTTTTCTGTGGAAGGCACCGGCCAGCAACGCTCGGGTCGGGTCACCAATCGCCCCTAAGAAAAGTAGAGGTGTTCCTCTCGCGGTGGCTTGCCTCCGACGGTGAGAACGTGCTTTACACAGGCCTGACAGAGCGGATACATACGGACACTGTCCTCCCGCTCGTTCAAGTGGGCTGCCAGGCGTGCCCGGAGAAGCACAAGCTCCTTCTTTGTCAGGAAGCATTCGAAGACTGAATACTGAGTCCACTGCCCGAAGCCACAGAGGATCTTGTACACACGGGCACGGCGCCGATCATCAGGAATATCATAAGCAATGATATAACAACAGGTGTCATGAGACATATAGCGATTTCACCTCACTACGAACGGCTGATAGTATGCAATCTCGCCAGTCAGGTACTTGGCCAGAAGACGCGCCTGTAGCTCGATGC # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAACGCCGCTCAAGCCCGTTTAGGGATTGGAAC # Alternate repeat : GTCAGAAGGCCGCTCAAGCCCGTTTAGGGATTGGAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.40,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 8 2456848-2457253 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCIF01000002.1 Thermogemmatispora tikiterensis strain T81 A4R35_scaffold00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2456848 37 100.0 33 ..................................... ACGCAGGGCGTGCTGCTGCTGATCCGCTTCCAA 2456918 37 100.0 39 ..................................... CTCGGGGAAGAACTCAAGACGCCCCTGGCCCACAGCGCC 2456994 37 100.0 38 ..................................... TCCAGGTACGAATACGTCCCCCCGGGGATGTCGACATC 2457069 37 100.0 37 ..................................... AGACACCTCTATGAGGTACGTGTTCCATCCCCAACCT 2457143 37 100.0 37 ..................................... AGACACCTCTATGAGGTACGTGTTCCATCCCCAACCT 2457217 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 100.0 37 GTCAGAAGCAGTGCAGCGGCCCGTCTGGGATTGAAAC # Left flank : CAGCGGTCTCCCCCCGGGTCGTGGGAGGAACAGCAGGGGAACCGGACAGGAACGGAAGAGGAAACAAGCTGGAACCAGCTGGTCGTTCTGGCGCAGCCCCCGGGAGCGAGCAGCATGGCTGCGTGGGAACACCAGGCAGAAGAGCGGGCAAGCGCCCTGAGCCATGCGGCAGGGCAGCGCTGACTGCCCCTGTGGCGGTGAGGGGCGCCGGCATCACGAGCGAGCAGGAGCCCTGCGACAGGTTCACTCACGGTTTGCTGTATGCAACCGATAAAGACGATATCCTCTTCATGCTCTTTGATCGCTGTTGTGCAGGTCACTTCGAGGATCGCAGCACCCGGCGTTCCACGCAGCGATCCTCGAATGGCTTTCCAGGCCGTCTGAGGGCCAACGTGGCTGGCATGATGACCGCTCTTAAGCGGTCACTGCTGACCGTTTTTTTGGGATCATCGAATCTGCTTGACGGAGGCCGCTCCAGATGCTCCGCTAGAGGGGGTACC # Right flank : CGGGTTTGCCGACAGGGCTGACGGCTTACCGCCTTCCGCTTTCAAGGCCGCTTCACTGCTTGCTGCCGGGTGTGCTCCCAGGCAGGGAACAGTGTAGCAGCCTCTCTCCGTCCTGCTTCAGGAGTGAGCCGGGAGGCAACCGGGAAGGTCGCTGGTCGCCGCTGGGTCGCTTCCTGGACCCAGGCGAGAGGCCACCGCTCTACGGCTGTCAGAGCGCAGGCACGTGGTGGCTCATCGAAGCAGCGGCAGGTGGGACCTGCCAGGACGAGGGGGTACGTTCGTCTCCGCCGGAAAGGAAGACAAGAGAAGAACCGCTCCCTGTCGAAGGGCAAACCACCGATGCCTGCCACCAAGAATCAAGACCCCGCCAGCGCACACGCCTGTGGTCCTGGACATGGCCAAAGGGCCTGCCAGGGGCAGGCGTTGAGCAGGGCGACGATGACACGGGAGCAGAGGAGGCCGGTCAGGCAGGCAGGCAGCCAGGATGGGAAGGCTGACGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAGCAGTGCAGCGGCCCGTCTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.70,-4.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 9 4574881-4576243 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCIF01000002.1 Thermogemmatispora tikiterensis strain T81 A4R35_scaffold00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 4574881 37 100.0 38 ..................................... CTGCCGCCTGCTCAGCCACCATTTGCATGATGTTCTGC 4574956 37 100.0 37 ..................................... CGCAGCGCAGCCTGCCGGTGACTGGCAGTATGCTCTG 4575030 37 100.0 38 ..................................... ACCTCACAAAATCGCTCTGGCGAGGGTGTGCCCCCCCG 4575105 37 100.0 38 ..................................... TTTCCTCATACGCCTGCAGGCAACTGCTGGTACTGTTA 4575180 37 100.0 38 ..................................... AGCAGACACACGCGCGCCAACCCGCTCACGCGCAGCAC 4575255 37 100.0 37 ..................................... GGAATGCCTCCTTGAGCAGTTCAGTGAAGCGAATTGG 4575329 37 100.0 36 ..................................... AGTAGCTCTGAGCGATGACTGTGATCACACGATTGC 4575402 37 100.0 37 ..................................... ATTGTCCAACGCCACCACTCCCTGGGGGGCCGGCGGC 4575476 37 100.0 35 ..................................... CGGATATTCCGCTGCGCCGCCTCGGCGATGGCGAC 4575548 37 100.0 36 ..................................... CGGGTGCAGCAGCGTCGCCCGCTCGTGTCTCCCCGC 4575621 37 97.3 35 ..................A.................. ACCAGGACTGCAACCAGACCTGTCAGGTCTCTCGT 4575693 37 100.0 36 ..................................... GTGCTCCGATTTCTGTGGCCGAGCGCGTAGCTCAGC 4575766 37 100.0 37 ..................................... TAGTGCAGGACGCCCGTGGGGCCTCGCCAGACGCCAA 4575840 37 100.0 36 ..................................... TTCAGCCTCCTGCGCGAGGCGGTGCAGCGTTTCGAA 4575913 37 100.0 36 ..................................... TGAGCAACAAGATCTCTGCCAAAGAGCGATCTCCCT 4575986 37 100.0 36 ..................................... CGCACAGCCGCGCCCGCTCGGTACGCCATTCTTGAG 4576059 37 100.0 35 ..................................... CTACAGAAGATAATGGTTTTGCCGGCCCCCGTTGG 4576131 37 100.0 39 ..................................... GGCTGCTGCCGGCCTGCCCAGAGAACAAATGGCTCTCCA 4576207 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ======================================= ================== 19 37 99.7 37 GTCAGAATGCAGCTTGAGCCCGTTCTGGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTAGAAGGGGTACC # Right flank : TGTGAAGGCTCCAACGGAGACAAGACGCTGTCGCAGCAGGGGGACAGTTCGCCTGTGCATGTGCGCACCTCACGCCCTGCTTGCAAGCGCCTGTGAGCGTCCCGCCGCGCTGGTTGAGTGCTGCTCCCGCCGGGTCAGGGTCTCCCTCGCCAGGGATGTCAGGGACCGCATCCCGCTCTCCCAAGACCGCGCTGCGCGGTCTAAACAGCGACACAGCAAGAACGGGGACTCGTCCCTTCCCCGCTCGCTGCCGTAGGGATGCTGGCAGCCCAGGGCATCAGCCCGGGGGACGGACATCGTTGAACCCCTGGGATGGAAATGGGAGGCACGGCGGAGCGCAGAGCCAGGAGCACGATCATGAGCAGGCATCGTAACAGTCTGATCCGCGAGGCCATCGAGCGGCTTGATCGCCTGATGGCCATCGGCGAGAGCCGGCTGTCGGCTAAGCAGACAGCTCGCCAGCAGGGGCAGCCCGACTGGACCTACTCAACGGGGCGCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAATGCAGCTTGAGCCCGTTCTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 10 4600924-4601176 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCIF01000002.1 Thermogemmatispora tikiterensis strain T81 A4R35_scaffold00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================== ================== 4600924 32 100.0 42 ................................ CGTCTCGCGCTACGAGCGGCGCAAGAGTCTGCGCCTGCCTCT 4600998 32 100.0 42 ................................ CTCCCCCCAACCATAGCCGAGGGGATAACGATGGCTCACTCA 4601072 32 100.0 41 ................................ CCAATGCAATCCGCGTGCCGGAGCGCGTCCTGCCATCCTCA 4601145 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ========================================== ================== 4 32 100.0 42 GAAAGAGAGGAAAAGCCCGTTTGGGATTGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGATTAAGGGGCCGAGAGAAGGTTTCCCTTTGCCTCT # Right flank : AGGGATTGAAGGACGAAAGAGGAACAAGAGGGAGGGAGCGCAAACGTGGAAGCCCTGCTTTCCGCCGATACATCGCTAAAGGTTGAGAAAATCTGGCTGGGCATGCTGCGTACATTGCCACCCGCCAGGCGGGTCGCGATGGCCTGGGACCTGACAGGCTCTGCGATCAACATCGGACGCCTGGCCGTAATGAGCGAGAGACCCGACCTCGATGCCCATGAGGCCGCCCTGAGCCGTGCACGCTTCCGTTACGGGGCCGCCATTGTGCACCTCGCTGAGGAACGCCGCCGCCGTCTATCGGAGGTGGAAGCGAATCGCTTCCCCTCGCTGCCAGAGGTCCTCTGGCCGCTCCTCTCCGCGCTGGAGGCGCTGCAGATCACTGCGGTCCCCCTCTCGCTGGCGATCCCCTTCTATGGGGTCCACCGGTCCCTGGGCGACATCTCCCTGGCCGTTGAGCGCCTGCCAGCGCGCCAGGCCCTGCAGCAGCGGTTGCCAGCGCG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAAGAGAGGAAAAGCCCGTTTGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 11 4739479-4738716 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCIF01000002.1 Thermogemmatispora tikiterensis strain T81 A4R35_scaffold00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 4739478 37 100.0 37 ..................................... CAGACGTCAAATATTTTTTGAATGCTGTTCAAAAAGA 4739404 37 100.0 37 ..................................... TAGCCAAGGATCATCTCGTCCGCTTTGGACTCTGCTG 4739330 37 100.0 35 ..................................... CTTCAATTATCGGAGCACCGCCATGACCAGCCGGC 4739258 37 100.0 37 ..................................... CGATCCAGGCCGCCACCTCCAGATTCCGATCATCAGC 4739184 37 97.3 40 ....................................G GAACCATCTTGAGTGGTCCTCACTCGTCAATTGATGCAGC 4739107 37 97.3 30 .................................A... GGGCCAGCTCCCTGCAGCAGGAGACATTGC 4739040 37 100.0 37 ..................................... CAAGGGATAGAGGAGGCTTTTGGCGGCCAGACGCAAA 4738966 37 94.6 32 .C.A................................. GAGATCTGCCTCGCTGAGGCTTATTCCCTACT 4738897 37 100.0 35 ..................................... AAACAGGTTGGGGTGCGGTGGCCATTGTCTCTTTT 4738825 37 97.3 36 .................................A... CCGATAAGCGGCTCCAGAAGTGGCTTGCCTCCTGGC 4738752 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 11 37 98.8 36 GTCCGAACACCGCTTAAGCCCGTTTCGGGATTGGAAC # Left flank : GCTTTGAGCAGCCCACGTGGTTGGAAACAGCGTCTGCCTTCAGGAAGTATCTGGCACCATTGCAAGAGGAGATTGCGATGCTCAAAGCTGAGCTGGGCAAAGTCGATCTCCTGTTCGAGCGCCAGGAGAAGGGCCTGATCTGCTGCCGAGGAAGAGACCTGCTGCTCCTCTGGCGGGCCGGGGTATCTGAGCGCTGAGGGACGGCGTCGTTGAGTGAAGTGATGGCGAAGGTGCTCGGGACAAGCTGGCGGTCTTCTTTTTATATTTTCTTTTGCCAGAAATACCGTTCGAATGAAGAATATATTTCTGGTGCCTGTCGCTTCGAGGATCTCGGCTCCCGACTTTCCACGCAGCGATCCTCGAATGGCTTTTGAAGCGGTCCGAGGGCCAACGTGGCTGGCAACATAGCCGCACGAATGCGGTCACTGATGACCGATTTTTTGGGATCATCGAAAAGCCTTGACAGAGGCCGCTCCAGATGCTATCTTAGAAGGGGTACC # Right flank : GCAGGGCCTCTACCTGAGCAGGGGCGCCGCCAAAGTAGAGATCTTGCAGGGCCCTGATGCCTCGCTGATAGGCAGCCAGCAGGTCTTGAGCGCAAAGCTGGGCGAGTGGCGGCAACTCCTGGCCGGCAGGAGCCATCAACACACGCAGATCCTCAGCCAGAGCACGGCCAGAGCCTTCCTCGGCTGGCAAGCCCAAGAGACCCAACGCTTCGGGCGAGGCCTCAAGGCAGCGACTCAAACGCTGGATGCTATCAATGCGGATCGCCTCGCCGCGTTCAGCCCGCTCGACCGTCGAGAGCGAGACCCCCGCAAAATCGGCCAGCTCGCGCTGACTCCACCCGCGACGCTTGCGCGCCAGGCACAACGCTTCATTTTTCAGTAGATTTGCCGACATTACTCGCTGCACAACTTCACGTAATGTATAAGACGGAGTCTGACCAGAAACTGATCAAAGTAAAGGCGCCGTTGAATCTCTCTGGCTTGCAGGCATCTTTAAGCGC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAACACCGCTTAAGCCCGTTTCGGGATTGGAAC # Alternate repeat : GTCCGAACACCGCTTAAGCCCGTTTCGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.10,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 12 4754776-4754509 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCIF01000002.1 Thermogemmatispora tikiterensis strain T81 A4R35_scaffold00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 4754775 37 100.0 36 ..................................... AGCGCGGCCCGTGGCTATTGGCAAGCACTCGCGGAC 4754702 37 97.3 43 ..T.................................. CTTCGGGCGAGGGGCCTGTCGGGGCCTGCTTCCTCGATCTGGA 4754622 37 100.0 40 ..................................... TCAAGGGGAAGCAGTGTCAGCCACTCTCTGCTCAGCGTGG 4754545 37 94.6 0 .................................G..T | ========== ====== ====== ====== ===================================== =========================================== ================== 4 37 98.0 40 GTCCGAACACCGCTTAAGCCCGTTTCGGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTCTGTTTAGTTACTTGCATTCTCGTTCTCAG # Right flank : AGGGATTGGAATTAAGCCCCAAAAAAAGAGCCAAGCCCCTTCCCCCTGGTTGGCGGGGGAAGGGGCGACAAGCTTCAGGGAGTCTCCTTGAGGTATCCAGAGCGGAAGCGCTAGAGCTATAGACAGCTCATCTGCTAGAGACGACTAGTACTCAGGAGCCGGCGCTGCTGGGGCCTTCTCCTTCTCTGGAATATCGGTGACGAGGGCCTCCGTCGTCAGGATCATGGCGGCGATGCTGGCCGCATTCTGCAGGGCCGAGCGGGTCACCTTGGCCGGGTCGATGATACCGGCGGCGACCATATCCTCGTAGCGATCGGTCAGCACGTTGTAGCCAACGTTCTCGTTCTTCTGCTCCTGCTGCGCGCGGCGCACGCCCTCGACCACCACCGAGCCATCGCGGCCCGCGTTGATGGCCAGCTGGCGCATTGGCTCCTCCAGAGCGCGGCGCAGGATCGACACGCCCGTGGCCGCGTCGCCCTCCAGCTTCACGTTATCGAGGG # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAACACCGCTTAAGCCCGTTTCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.10,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : NA // Array 13 5003701-5002793 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCIF01000002.1 Thermogemmatispora tikiterensis strain T81 A4R35_scaffold00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 5003700 37 97.3 38 ........................G............ TACCCTACTCCCACTTTTGAGATAGAGATATATATCAT 5003625 37 97.3 36 ........................G............ TGCAAAACGGCGACAGTCAAGTAAGAAGTTCTCTAG 5003552 37 97.3 37 ........................G............ CATGTTCCAGGCTCCGGGGCCGTCTGATGCATTCACC 5003478 37 97.3 36 ........................G............ CGCCAAGGGCCTTGATGCCCATCGCAGCGAACCCCA 5003405 37 97.3 34 ........................G............ GACGGGACGGATCTGGCTGAGCCGGGGACATTCG 5003334 37 97.3 29 ........................G............ GAAGCCGACCGCGACTACTACACAGCCAG 5003268 37 100.0 40 ..................................... GGATGGAGTGAGCGGGTTGTGTGGGCGGTTGGTGTTACAG 5003191 37 100.0 36 ..................................... GTTCTGCAGAGTCCCCGGCCTCCAATGGGAGCGGCT 5003118 37 100.0 35 ..................................... TGAAGCGAGAAGCACTGGCTGAGCCGATCCGTTTT 5003046 37 100.0 35 ..................................... GCTGTATATCTATCGCGCTACTGCGCAAAATGTCA 5002974 36 97.3 35 ......-.............................. TCACCACTAGATGAGCCTGGCTGACCTGGCTGACC 5002903 37 100.0 37 ..................................... TTGTCTTTTGGCGCTGGGCTGCTCTGGAGAGTTGAAG 5002829 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 13 37 98.5 36 GTGGCAGGGGGGTCGATCCGCTTGAGGATACTGAAAG # Left flank : GCTGCACGTTTGGACCTGGTAGCCGGCGCGGCTGAGGGCCACGCGCAGCACGGTCCGACAGACCGCGAATATGGCTTTCCTTGCCTCCTCATCTTGTGGCTCCTTGCTCCCAGGGTGGGGGTAAGCGCGGGTAGGACCTGGCCTGCGCGCTTTTTGTTTTTGGGAGAGATAGAGGGAGGAAAGGGAGCCTGGCCAAAAAATGGCCCATTTGAGAGGCCGATTCGAAACTCTCCGAGAGTACCACCCTAATGCGGTCAGAATCTGACCGCATTAGGTCAGAATCGCACATCTTCTGCTGCTTTTATGATGAGAAATCTGTTGTTGCTTTCTCGAAACTCGCCCCTTGCGGCTTGCAAAAAACGAGTTTCGAGAAAGGTCGTGATACGATAGATGTTGGTGGCTGGAGGAGGGAAATAACGAGGCTCTCAGATGCCAAAAATGGGGCCTCGTTCGTTATAAGATATGTGAGAAGTATCTCCGACCCTGCTTCGCTGGCTGCG # Right flank : ACAGGCAGTATAGCATCTCCAGGCACTACGCCAGGTTGCCAGGAGCGCTGAGCAGCAGGTCAGCCCCTCATCAGTGGCCATACTCGCTGCTCTGACGCCCAGCCGAGGCCGGAGGCACTGCGAGTATGGCCACAATGGTCCATTCCCCGCAGTACTTCCCTTCTCTCACGCCCGGCAAAGCGCTATGTGGGGCACTCTCTGATGAAGTGGAGGCGAGAATCGCGCCACTATTCCTTGACGTGGTTGCAGCAATCTGCTATACAGGTATCTAGCAACACCGTTGCAGGTAGAGAAGAAAACAGGCAGTCACGGGAGCTCGGGAGAGCCGGGCTGAGAGGGTGACCAGCCGCTGCACTCCGGCAGATGGCACCGTCACCGACCGCCAGAACCTGATCTGGGTAATGCCAGCGCAGGGAGCGTGCTTCTTGCCGCCAGGCAGCATCGAAGCAGCAGAGCCATCCCCGGGGTGCTGGCGCTCTCTTGGCCAGCACCCCGTTGTC # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAGGGGGGTCGATCCGCTTGAGGATACTGAAAG # Alternate repeat : GTGGCAGGGGGGTCGATCCGCTTGGGGATACTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 14 5049298-5049848 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCIF01000002.1 Thermogemmatispora tikiterensis strain T81 A4R35_scaffold00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 5049298 37 100.0 35 ..................................... ATGATCGATCTCGACGATTGTCTGATTCGCGGGGA 5049370 37 100.0 37 ..................................... TAACGGCTATATAACCGGCCTGCCGTCAGATCCAGGA 5049444 37 100.0 37 ..................................... AGAAACACCCCGAGACTCATCAAACTGCGGAACTGTC 5049518 37 100.0 37 ..................................... GTCCCCATTCGACATCGGCACAATCCCGATGTGGTCA 5049592 37 100.0 36 ..................................... TTTCGCTTTGTCCCTTGGCCAGGTGGCTCTGACCGC 5049665 37 100.0 36 ..................................... GAGCAGCTTGAGCAGCGGTGAGTCGGACTCTTTCGC 5049738 37 100.0 37 ..................................... GACGGAAGAAAGCTGATGGGGACCACCCTGACGGCAG 5049812 37 94.6 0 ..................................G.G | ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 99.3 37 GTCAAAAAGCATCGCAAGCCCGTTGTGGGATTGAAAC # Left flank : CCCGCGCCAGCTCCGGCTCTGCACCAGGCAGGAGCGGCGCCGCGCTAATCCAACTCCAGGGGAATCGCCTCGCTACCCAGGACTAGCAACGAATGCGGGGCTGCTGCGTGGGGACGTCTGCCAGGGATCATCGGCGTTGCCGAGCCGAGCAGATCGCCGGTCAAAACGGGGGCTTGCTCTCGCACAGGCGGCGTGAGCACCACGGGACACGAGCCGGTGGCGATCAGGAGCTGCTTGCCGTACAGGCACTGAGGCCTTCCAGTTAGTACCTCTTCCTACTACGAGCAGCAGAAGCCTTTTTTGACGCTGATGCCGTTCACTTCGAGGATCTCGGCTCCCGCTCTCTCACGCAGCGATCCTCGAATGGCTTTTGAAGGCGGCTGAGGGCCATATGGCCTGGCATCATTACCGCACAAGAGCGGTTGCTAATGACCGCTTTTTTGGGATCATCGAAAACCCTTGACGGAGGCCGCTTCTCATGCTATCTTAGAGGGGGTGCC # Right flank : GGGATTAAAAGGGGTTGAAGCCGAGAGAAGGAAAGTGATAGATCGTCTGGGCCTGCAAGTAATCAGAAAGCAGGACAAGCCTGCCAACTTCCCTCACACCTGTATCCTCTCACCAGCAGACCTCTGGTTTGTTGAATGCAAGTATTCCGTTCAGCAGGCGCAAGACGGAGAAGAAGGCTGGATGGAGTTTTAGCACGGCTCTGGCTTTATTCCCCACCATCATTGGGAGAGGCCACCCGGCTCGACCAGCAGCCTCCCATATGGCGCCGCTCCTCGGAAGGCAGAGACTCCCCCATAAGGCTACCCGGCTGCGCCACGTGCAGTGCAGACGGTCACCCACTGGCCCCACCCGGCACAGGCGCCCTACCAAGGAACAACCTCGCTCCCTCCACGAGGGAACCTCTCATCGACAAAAAGCAAGACCATGTCTTGCTGTCTCCTACCATCCTCGACCTGCTCCTCCTGGCTCAGCTCCCAGATCCCTGCTCTGCCCGCCTTCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAAAAAGCATCGCAAGCCCGTTGTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 15 5857379-5856120 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCIF01000002.1 Thermogemmatispora tikiterensis strain T81 A4R35_scaffold00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================== ================== 5857378 37 100.0 40 ..................................... GATTCTACTGACTCATGGTGAAGTAGTTGCATCATTTTTG 5857301 37 100.0 39 ..................................... TCTGCCGCGCCCGAAATGCTCATGAGGGGAGGGGAGTTC 5857225 37 100.0 35 ..................................... GATGAAGCGCTAGCCCTTGCAGAAAATCAGACTAC 5857153 37 100.0 36 ..................................... CTGAGGCCGCCTGCACGAAGCCGCCCAAGAGCCTGG 5857080 37 100.0 36 ..................................... ATGACAGGCAGCTGCCACGCCTGCCGGCGTTCGTCC 5857007 37 100.0 38 ..................................... GACCAGGTCATCCGGCCAGAAGGACTGCTCCTCCTTCT 5856932 37 100.0 38 ..................................... CTGGTGGTACTCCCAGGGGCTGCCTGTGGCGCGCGACA 5856857 37 100.0 36 ..................................... ATGACGTTATTGCCTGACCCTGCCACATGCACGTAT 5856784 37 100.0 36 ..................................... GAGGCTGGTTGGCTAGGGCGGCCTTGGGCGGGCTGA 5856711 37 100.0 37 ..................................... TCAATGATGGCGCGGTGATCCAAAAACATCTCTGAGG 5856637 37 100.0 38 ..................................... CGAAATACCTGATCGATAAACTCGGCCAGCTCTTCTCG 5856562 37 100.0 36 ..................................... TAAATTGTAATCAATACTGATTGTTATTACCTTAGA 5856489 37 100.0 36 ..................................... GATTTCGACTGCAAAGAGCTGCTGGCCGATCACCAC 5856416 37 89.2 37 .....G.........T.........G..........G ACGAAGAGATGGACCTTACCGGTGCTCCCATCATCGC 5856342 37 89.2 35 ..T....................C.G..........G AGCCAGAACGCCCCGATCAGGAGCAAGGCCTCCAC 5856270 36 86.5 78 ...............-.C...A...G..........A TATCGTCAGTATGCCTCTTTTGCCTGCCCGAGTCTGCAGCCGCTTGACTACACCTAAGAACCGCTAGCCGTAATCCAG 5856156 37 70.3 0 .....T.A..C..C..C.T.....CCA..C.....G. | ========== ====== ====== ====== ===================================== ============================================================================== ================== 17 37 96.2 40 GTCAGAATGCTTGTCCTGCCCGCTTTGGGATTGAAAC # Left flank : GTAGCCTGGCCCTGCTCTTGCCGCGCGCTGGAGGCCAGGTATCCGCTGCCGAGAGCGAGAGTACGATGAGATCGCCGTTGGCAGTGGGCAGCTCGATCTCAATGCCGACGGCGGGTCTGGCCGAAGGCGACGGGGTCTGCGTCTCTCTCCCCTGTGTACTCAGGTCAGGGTCTGGCTTCGTCGGCCAGCGGGCTGGCGCTGGAGGCCGGAGATGGTCGGTAGCAGGGCGAGTCGGTGCCGGTGTAGCTCCTCTCTGCTGATGCTGCTCCTTCGGCTGCTGGTAGAGGGGATGAGCCTCTTTTGCCGCTCACGCCGTTCGCTTCGAGGATCTCAGTTGCCGAGTTTTCACGCAGCGATCCTCGAATGGCTTTGCAGGCGGTCTCAGGCCGATTCTGGCTGGCATCATGACCGCGCAAAAGCGGTCACTTATGACCGTTTTCTTGGGATCATCGAAAAGGCTTGACTGAGGCCGCTTGTAATGCTACTCTAGAGGGGGTACC # Right flank : TCCTCGCCCCTGCCTGGCCTGCTACCCTACCCTTGACATCTCTCAATCATTCAATTATTCTATTGAATATCAATCTATCGAAGAGAGCAACGCCTGGCGCAGAAAAGCCGGTGACCAGACAATCAGACAGCCAGAGACAACTGAGTCAAGCACAGAGCCAGGCCCACCAACAACGGCGCGCCGCTCGCCTCAGCCAGCAGACCAGCGAACCCAGGAGAAGAGCGAAGAGCATAACAGAGAGAGAAAAGAAGAGGAGAGCAGAGATCGGCATGGAATATCAGCGCTCTGAAAGCAAGCGAGCCTTTAAAGACCAGCTCTACGAACAACTGGCGCGCATCGGCAAAGCCCTGGCCAGCCCCCACCGACTGGAGCTGCTCGACCTGCTCGCCCAGAGCGAGCGCAGCGTCGAAGAGCTGGCCCGCGAGACCACCCTGCCCGTGGCCACCGTCTCCCAGCACCTGCAGATTCTCCACGCGGCGCGGCTCGTCGACGTACGGCGC # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:0, 3:3, 4:0.81, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAATGCTTGTCCTGCCCGCTTTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [24-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA //