Array 1 277377-273808 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTDR01000016.1 Klebsiella pneumoniae strain K334 K334_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 277376 28 100.0 33 ............................ TTTATAGTAAATGAGGTGAAGTGATGGGTATTT 277315 28 100.0 33 ............................ TGCGGCCATTCAGTGCAATCCTGATATCAGATG 277254 28 100.0 33 ............................ TATGGTTCCCGCGACAGGATTCGAACCTGTACT 277193 28 100.0 33 ............................ TACGGATTTGTTTGCAGTGGCCAGCTTAACCAG 277132 28 100.0 33 ............................ TGCGCAGGCTGATGCGCAGTGGGACGTGGCTGA 277071 28 100.0 33 ............................ CTACACCATTCTCAAGGCACGCATGCGCTATCT 277010 28 100.0 33 ............................ CTACCTCTGCCGCTGGCGGTGTAAAAAAGACGC 276949 28 100.0 33 ............................ TGTCAATGCACTGTCCGGCATAGGCGGATATGA 276888 28 100.0 33 ............................ TCTTGCAACGTTATTTCCGGCTATCTCCAGAGA 276827 28 100.0 33 ............................ CGCAATTATCCAGCTTGCACAAGGCATGGCATC 276766 28 100.0 33 ............................ TCTCCATTCATCCCTGCGTTGATTCGCCTGACG 276705 28 100.0 33 ............................ CACTTTTACCGGCTCCGCACCGAAGTGTGGATG 276644 28 100.0 33 ............................ TAAGGTGGTGGCTGAGCGCTCTGATAAAGGCAG 276583 28 100.0 33 ............................ TATCATCAAGGCCGAGACTCAGGCTGATGTATG 276522 28 100.0 33 ............................ CATTCCCACTCTCCAGGAAGGCAAGATGGTATG 276461 28 100.0 33 ............................ TATGCTGATGACTACACTGTCAACTCAAGTCAC 276400 28 100.0 33 ............................ TCGGCCTCCATGACGCCAGTGGCCACGTCAGCT 276339 28 100.0 33 ............................ CATTTAAAGATATGGTATCCCCGACAGCCACGG 276278 28 100.0 33 ............................ TACATCGTTAGCATGCAGCCATTCATACGCATG 276217 28 100.0 33 ............................ TAAAAAAGAGATGACGCTAAAATGAGAGATATG 276156 28 100.0 34 ............................ TAATGTCATTTACTGGCATTCGTCCGGTGACGTA 276094 28 100.0 33 ............................ TGTAACGGACAATGGCAGCATCCTTGATGCGTC 276033 28 100.0 34 ............................ TTACGTCATTATGAAAACAGGATTTAGACATGAG 275971 28 100.0 33 ............................ CATGAGCAAGACAAAAAGACCATCGAGCAGGAA 275910 28 100.0 33 ............................ CGAGCTGACTCTGAGCGCATGCTGGACAAGCTC 275849 28 100.0 33 ............................ TTAAGCCGCCATCAGGCGGCTTTCTTGTGTGTA 275788 28 100.0 34 ............................ TGACTAACGAGGAATTACAGGCTGTATTAGCCGA 275726 28 100.0 33 ............................ CCTGGGATTTTAGCGTCACATACCTGGCGTCAA 275665 28 100.0 33 ............................ CACTCTGAATGTAACGTGCAGCATCATTCAGCT 275604 28 100.0 33 ............................ CCACCCGAACACCGTGCAGCTCAACCTGAGCAC 275543 28 100.0 33 ............................ TTTGCAACAATATACCACTTCCCGACCTTTGAT 275482 28 100.0 33 ............................ TAGGTTTTTGTTGTCTGATTGAATGGGTTGTCA 275421 28 100.0 33 ............................ TGCTTCTATTAACCTGTTTCTGTAGCTTAAACC 275360 28 100.0 33 ............................ TGATGTGGGAGTGTGGTGTAAAAAACTCTCTTT 275299 28 100.0 33 ............................ TCTTATGCACGGTGTTGGATACGAACCACTCCA 275238 28 100.0 33 ............................ TACCCCATTTCTGTCTTTTGTAAGCTCCATCAC 275177 28 100.0 33 ............................ TATTAATGCTTACGTTTCGTGGTTTGAGGATGA 275116 28 96.4 33 .......T.................... CGTCGTGAATTACGGCAATACGCTGGACCGCAA 275055 28 100.0 33 ............................ CAGTACCGCCAGCAGCGCCTTGATGCCATGTGG 274994 28 100.0 33 ............................ TTAACTATGCAGCGTAACCGTGCTTTCGTCTCA 274933 28 100.0 33 ............................ CTGCAAAAGCAAAATGTTGCTCTGTCAGGTGCA 274872 28 100.0 33 ............................ TATCAATCTCTGAAATCATTTTGTCTATTTTGT 274811 28 100.0 33 ............................ CGCGACGACCTCGTCATCCTCCCCGCTGCGGCT 274750 28 100.0 33 ............................ TACACCCAGCTCTTTGACGCAAAGGCTCAGGAG 274689 28 100.0 33 ............................ TCCTTGGTTCGTTTCTTCTGATGTTTGCAAGGC 274628 28 100.0 33 ............................ CTGGTTGACGTATGCCGTGATGCTGCTGGTAGG 274567 28 100.0 33 ............................ CAGAGCCGTCACCATTATCTCTTGCTGTTGATG 274506 28 100.0 33 ............................ CATTCGAGTCAGTAAAAGCGTCTAGTGCTGACG 274445 28 100.0 33 ............................ CGCTGTATGCCCCCCATCCTTCGCAAGCACTAC 274384 28 100.0 33 ............................ CGATGACAACTTTGCCTACTTCGCTGCGCTGGC 274323 28 100.0 33 ............................ TTCCTCTTCTTCCTGACAATCAGCGCAGCGCTG 274262 28 100.0 33 ............................ TGCGGGTGGATGACAATAACGCCTGGCGCGCCG 274201 28 100.0 33 ............................ CCTGTTAAGGATGACGCGGGGAAATGGGTTATC 274140 28 100.0 33 ............................ TCGATGGCGAGCTGCTGGTGAAAAAGTCGATAC 274079 28 100.0 33 ............................ TCCAGGCCAGATCTGTTTGGGTTGGTGTCGAAG 274018 28 100.0 33 ............................ TGAAGGTGAGCGCCAAAAGGAGTGGAAGCATGC 273957 28 100.0 33 ............................ CGGCTGCGTTATCCGGCAGCACGAACTGGACCT 273896 28 100.0 33 ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT 273835 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 59 28 99.9 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTTGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCTTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGTTACAAATTGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 287013-286130 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTDR01000016.1 Klebsiella pneumoniae strain K334 K334_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 287012 28 100.0 33 ............................ TGTCGCCCTGATGCGGGCGATAAAGGAGCGCAG 286951 28 100.0 33 ............................ CGTTAGACGCATTTACGGTCGCTGGCGGGTTAA 286890 28 100.0 33 ............................ CACCGCGCGGAGTCGGCTTCCATGATCCAATGA 286829 28 100.0 33 ............................ CTGATTCAGATACATCACCGCCACCGAGATAGT 286768 28 100.0 33 ............................ CCGCACTATCCCTGCTGCGCCTGGCATCCAGAT 286707 28 100.0 33 ............................ TATGGGTTGCAGTGTAAGAGCGGCAAACGAAGC 286646 28 100.0 33 ............................ CGGCTCTTTTTTATCTCCTTCATCCTTCGCTAT 286585 28 96.4 33 .............G.............. TGATCGGCGTGCCGTTTGTTGGACCCGAAATAG 286524 28 96.4 33 .............G.............. CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 286463 28 96.4 33 .............G.............. TATCGTGCAGAGTCACAACCTGACGGGATTATC 286402 28 96.4 33 .............G.............. TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 286341 28 96.4 33 .............G.............. TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 286280 28 96.4 33 .............G.............. CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [286271] 286218 28 89.3 33 ............TGT............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 286157 28 85.7 0 ............TG.....A.......T | ========== ====== ====== ====== ============================ ================================= ================== 15 28 96.9 33 GTCTTCCCCACACACGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACACGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //