Array 1 182349-181991 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLM01000012.1 Haloferax sulfurifontis ATCC BAA-897 contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 182348 30 100.0 36 .............................. GCCCACTCTTTCACACGCCATCCGTGAGCGATTACG 182282 30 100.0 36 .............................. ACCGCGACATCGTGGCGGACCCCAGAGGCGAAACCG 182216 30 100.0 35 .............................. AATTGCGGTGCAATTGCAACAGGTGCTACTACAAT 182151 30 100.0 36 .............................. GGCCGTGGCCCGCGCTCCCCATCAACGTCGACGCAA 182085 30 100.0 35 .............................. CGTCCGTGTAGCACATTGGCAAAAAGGGACGAAAA 182020 30 93.3 0 .....................A......T. | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 98.9 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : GTCAAC # Right flank : CCGTTCGGGAGTACAGCCATCGGTGACGCGACAGCAGAGAACACCACCGCTTCCAGTGAAAATCGAGAGACGACGTCGTGACTCGCGTTGCAGTTGTCCACGTGACGAAATCGAAGAATGCCCGGGGTGGGCTCCGAACCCACGATCTCCGCATGTCCCAGGTGCGAGGCCGGCATGACCTCGCGGGGGGCGGAGGCTTCCAAGGCGTTCCGCACCGATTGTGAAACCCTATGAGTGCGGCGCTATGTCCAGCTAAGCCACCCGGGCTCAACTTCCCGTTGTGTGCTGGTTGTATTTAAGCTTCTCATCTCCGACGACCGCGGGACGAGTCACCACGCCACTCGATTCGAGTCATCACCCGCGGATTTATGTCCCAACACCGGGTGGACACACGCATGAGCCAACCGGAGATCGTCCAGTCCGTCCTCGGAGAGGAAGACGTGGTGACCCGCGTCCACCTCGGGGGCGAGGACGAACTGTTTGTAACTCCGACGCGGACG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 237631-237920 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLM01000020.1 Haloferax sulfurifontis ATCC BAA-897 contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 237631 30 100.0 36 .............................. CCATCGTTAGATGTGGCCTCCGCAAATCCCCCTCGA 237697 30 100.0 36 .............................. GAGGTCGCCAATGTCCTGCCGGTAGTAATCCCGGTA 237763 30 100.0 34 .............................. TCATGTCACTCACGCAGACCACACAGAGTGCCGA 237827 30 100.0 34 .............................. TCCTCAGAGAGCGAGTCGCTGTTGGTAGCCCACA 237891 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 100.0 35 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : ACAACTTCGAGGCGCTCCGCGCCGGCGAGCGCTCGTTCGAGGAAATCGCCGCGCCGACGATGACGCTCGCCGCCGACACCAACGTCAGCGACGCGTTCGACCAGTTCCAAGCCGAAGACCAGGAACTCGCGCTCGTCTTACGAGACGGCGCGGTCGTCGGCCTCCTCACCGCGACCGACGCCCTCGAAGCGGTCATGGGCGAACTCGACGACCCGCTCGACTAACACGGCGGTCGCGGTTTCGGTCCCGTTTTTCCGGGGTTTTCCGGTCGCTAATCGCGACTCACGACGACCGAAGTCGCCGAGTCGAGCGTGCTCGTGGTGACTCACGGGTGGCTTGGGGCGTGTCGAGTTGGTGCCTGACCGAGGAGTCGGTCTCAACAGACCCAGTACTGACTCGTTTCCGTCGACCCCCCGGGGGGTACGGGGGAATCGAGGGTCGACGGAAACGTTGATGTGAGTTCGCTATGTACAGCCGTCTACCCCCGTGAATTCGGACGG # Right flank : GGCCGGTCCTCGACATCATCGCGGGAGTGGTCAACGGTTTCAGACGAACCCTTG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 52-1731 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLM01000028.1 Haloferax sulfurifontis ATCC BAA-897 contig_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 52 30 100.0 37 .............................. CGCTCGGCCGCGAGGTCCGACAGGACGCCAGCGGTGT 119 30 100.0 35 .............................. GAGTTGCTCGCCTTCGGCGTTGAGGCCGCCCGTGT 184 30 100.0 35 .............................. GACGTGTCGTGAACGGGAACGTTGTGACGCTCGCA 249 30 100.0 36 .............................. TGCTCGCGCGACGGCGTCTCGAACTCGGACCCGCCA 315 30 100.0 36 .............................. TCATGTCACTCACGCAGACCACACAGAGTGCCGACC 381 30 100.0 36 .............................. CTGGAGCGATGCTCGCAGCGACGACCGGACGTTCTT 447 30 100.0 36 .............................. GCGTCACCGCTGGGAGCCGTGGTGGTAGTCTGGCTG 513 30 100.0 35 .............................. TGAGCGAGGTTGATGCCTTCGAGGACCTCGACCGC 578 30 100.0 36 .............................. AGGATCTCCAGTTCGAGGCCGGTGGCGGTCTCGACA 644 30 100.0 35 .............................. TGCGGCTGGCCACTGGGAAGCCGTCGAGATCGAAG 709 30 100.0 37 .............................. GACTGACCGCGCGGCGAACGTCATCGGCACCTGCGTT 776 30 100.0 35 .............................. ATCACGGAGGACTAACATGAGCGAAGCCACCACGA 841 30 100.0 35 .............................. CTCCCACGTCTCCGACGGTACGAACCGGTACACGT 906 30 100.0 37 .............................. GACTACCTCGTCGCTGACCTCCTCGACGTCACGGGCG 973 30 100.0 37 .............................. CCATTGCGACACGAGCTTTATGGGCGTGGTCATCGGC 1040 30 100.0 36 .............................. TTTGATGCTCAACTCCGAGTCGCTTCTGTAACTCAA C [1055] 1107 30 100.0 37 .............................. TGTTATCCGACCTAACGCTTCGTAACGGAGTGAGCAA 1174 30 100.0 35 .............................. GGACAACACGCTCTACGAGGTACTGGAGCGCGATA 1239 30 100.0 37 .............................. ACGGTCGGGTCGCCGCGGCCGGTCTCAACCAATCCGA 1306 30 100.0 36 .............................. ACGGAAGACAACACAAACGAGGAGCTCAAGATCAAG 1372 30 100.0 37 .............................. CGCCTCTGTCTTGGGACTCCCCAAGCCGGGCGGCGGC 1439 30 100.0 37 .............................. CCGTAATTCGGACGCCCGAACATCGTCCCGATGAACG 1506 30 100.0 34 .............................. AGTTGCGTGACCGTCCCACTATCAACACGCTGGA 1570 30 100.0 37 .............................. CTGGTTACTCTCGTCGTGGCGTTCGCTGCGTCCGATA 1637 30 96.7 35 .............................G CCCGGCCACCAACTCCCGAAGGAAATCAAGCACTA 1702 30 86.7 0 T..................G..A......C | ========== ====== ====== ====== ============================== ===================================== ================== 26 30 99.4 36 GTTTCAGACGAACCCTTGTTGGGTTGAAGT # Left flank : TTGTTGGGTTGAAGTGATCCGGAGCTGACCGTCGACGAGCACCGCGACCTCG # Right flank : CGTCAGCTGAGCTACCGTCCGCTTGAACCGAGCGCGACTCAAACAATCGGGGCGGTCGACGGTCAGCGGCGAAAAAACCGACGCGAAAGAAACAGACCCCGACGCTACGCCGCCTCGGCGTACATCGCCACCAGCTCGTCCGCGTTCGACTGCCACGAGTAGCGCTCTTCGATGGCCGCCCGGTTCGTCCGACCCATGCGGACGGCTTCCTCGGGGTCGGAGACGAGTCGCGCGAGCGCCCGCGCCAGTTCCTCGGCGTCGCCGGGCGTGACGAGAATCCCGCGGTCGTCGGTGATGACCTCGGGGATACTGCCGACGGGCGTGGTCACGATGGCGTTTCCGCCGGCCATGCCTTCGAGCATGGCGATGGGAAGCCCCTCGGCGTAGGTCGGGAGGACGAACACGGTGCCGCGGCTGAGGAGGTCGCGCTTGTCTTCCTCGGAGAGGAAGCCGAGGTACGAGACGTTGTCGTGGGCGGCGGCGACCGCCTCGGCGCGGTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTTGGGTTGAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 50-444 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLM01000029.1 Haloferax sulfurifontis ATCC BAA-897 contig_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 50 37 100.0 36 ..................................... ACCTCGAACGGTCAATCACGGTCGAAGAGCAAGGGC 123 37 100.0 34 ..................................... TCTACGCGCTGTTGCTCTCTACACCACCGCATAG 194 37 100.0 36 ..................................... ATGCACGGGTTGGCGTTGACGGTGGCTCGGCATCGC 267 37 100.0 32 ..................................... AACGTCGCCGACGAGCTGGGCGTCACGCCCAA 336 37 100.0 36 ..................................... GAGGCTATCGCGTCAGTGATTCAGATGGGCGGGTGG 409 36 81.1 0 AC......A........G.......-...G.....C. | ========== ====== ====== ====== ===================================== ==================================== ================== 6 37 96.9 35 GTCGCGATGCGGTAGAAACCCAGAACGGGATTGAAAC # Left flank : AACGGGATTGAACGATAGGCCTCCGGACCGGGGAGGACGCCGTTCGCGTG # Right flank : CTCAAAGATCTCCGACTCGACGGCACCGATTGGCTCGGTCGCAACCACTAAATTGGGATACCCATCAAAGTGAATTTGTAATTTGCTAGCGTTCTACTCTAATTATGCACCTGCAGCCCCTGCTGAGTGTAACTTCTCTCAGTCGTGGCTAAGCAACTGGTTCGCGAGGGTTGTGAGTTCTGCTGTCTCATTAATGGCCGCCGTCCATCGTCGAGGTAGCTGTGACTGACCAAATCGAGCACCAGCGACTGCCCCAGCGATAGCACCGATCGTGTCTGCATCACCACCGCGGTTGACCGCGGTTACAATCGCGTCCTCAAGCGTCGCTGCACCAAGTGCGTCGTGAAGTGCAGTCTGCAGCGAGGACACGACGTATCCAGAGGTTTTCAGCGCGTCCGGAGACTCTCCACAAGCAATCGGTTCAAGCGCATCAGTAAGCGCCACGGGAGCATCACTACCAACGAAGTCAAGTGCGTCACGAAGCGGTGTGTCAGCGTCCT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGATGCGGTAGAAACCCAGAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [12,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : NA // Array 1 8189-8349 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLM01000005.1 Haloferax sulfurifontis ATCC BAA-897 contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 8189 30 100.0 36 .............................. GCCGTACGACGTCCCACACGATGTACAGCGGTGGGT 8255 30 100.0 35 .............................. CCATCGTTAGATGTGGCCTCCGCAAATCCCCCTCG 8320 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 100.0 36 GTTTCAGACGAACCCTTGTTGGGTTGAAGT # Left flank : TCGTCGTCGGCACCTCCGTCGACCGCATCCGCGAGCGCCTCGTCGGCGACGTCCACACCTACGGCGGCCGCTCCACCATCGGCGACTGGTACCGGACGAACCGCGCGCTCCGCGAACGGGTCGACGACCTGCTCGACTCCGCGTGCGAGCGCCCGTACTTCGACGCCGACGAGATTCGCCGCCTCCAGCGCGAGGAACGCACGGGCGAAGCCGAACACATGAGCGCCATCTCCGGCATCATCACCGGCGAACTCTGGGTCCGCAAGTACATCGACCGCGAAGGCGAACGCGGAACCGCGAGTGTGGCGGAAGCCGAAGACGCACCGCAACCGGCCGACTGAGGCCGGTGGGACTCTCGGTTGATTTTTCGCACCGCTGGTCGTGAGGAGAGGCGATCCGTTTCCGTCGACCCCCCGGGGGGTACGGGGGAATTGGGGGTCGACGGAAACGTTCTTTTGAATTCGGTTCGTAAGCAGCATTACGCCCGTGGTTTCGGGACG # Right flank : TGCCGGGTCGATTTGCTGGTCAGGGATGATGAGCTGGTTTCAGACGAACCCTTGT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTTGGGTTGAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 63528-63214 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLM01000006.1 Haloferax sulfurifontis ATCC BAA-897 contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================== ================== 63527 24 100.0 49 ........................ CACGTCCCGAAGCGTTACCGTCTCGTCGTCGATGTCGTCGCAGGGCAAT 63454 24 100.0 50 ........................ ACCGCCTCGTCGTCTATGCGGGCGCGGGCGAGAACGGGTCGCAGGGCAAT 63380 24 100.0 48 ........................ CGCTCTCGTCCGAGTCATCCGCACCCGTCGACGGGGTCGCAGGGCAAT 63308 24 100.0 48 ........................ AGATATATCAATTTGCATTGCTCCGAGTGGACCAGGTCGCAGGGCAAT 63236 23 95.8 0 ....-................... | ========== ====== ====== ====== ======================== ================================================== ================== 5 24 99.2 49 AGAAACCCAGAACGGGATTGAAAC # Left flank : TCGCAGGGCAA # Right flank : CGCTGTGGCCGGGCGAATCGAGGCCCCATTATCTTGTCCAGTAGAAGTCCACAACAGTTGGTTCGAAATCGCCGCTGACCACACCGCCGTGGTTCTATATGTGCCAATCTGAACGGCTGTGAGGAGTCCATGGATTTATTTCATCTACCTAATATCAAGGATGTACACTCTGTCCAGGTTTATCCCCGCTCGAGTTGGGTATACCACGGATTTAGTGAGGTAATGGCCTGAAAAACTCGAATACACAGGTTGACTACTCTCGTGGATTTATTGATGAAACGCTTCAGATAATCTTCCCGCCATCTTCCTTTGCCGGGCCTTCCGCTCTTGCTCTCTCGACAGATAGTTCCGAAGCACAACCTCCGTCGACGAACTCCCCTGGTCTTCAGCAACTCCCTCCAGTCCCTCTAGAACCTCAGCAACAGCCCCCTGATACGCCGAGTACCAGAACCGCCGGCCCATCTTCGGAGTTGGAGTCTCCCCATCAACAACCACTCCAG # Questionable array : NO Score: 8.92 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.09, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGAAACCCAGAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 278-24 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLM01000009.1 Haloferax sulfurifontis ATCC BAA-897 contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 277 37 100.0 33 ..................................... CATCAGGTAGCGCACGACCTCGGGGAACAGATC 207 37 100.0 37 ..................................... CGGAGATCGTGACCCACGCGGGTCAGGAGTACGCGCT 133 37 100.0 36 ..................................... GGCTCCACCCGCCGCCGCCTCCGCCGCCTCCACCGC 60 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 100.0 36 GTCGCGATGCGGTAGAAACCCAGAACGGGATTGAAAC # Left flank : TTGAAGCCGCCGAAGGAACGGTGGTACTGAACTTCGCAGGGGGTCCACGGGAAATTTTCCTCCCGCTGACCATCGCTGCAATTGCGCGGTCAGACATTGTCGATCTCGCACTCCAGTTCAGGGACATTGACGAAGAAATTGAAGAAATCACTCTCCCGAACCTGATGAGTCGCCCGTCCGACGCGACCCTCGACACACTCCGATCCCTCGTCACTATCAACGGAAATACGACACTCCCTCAAATCGCCGACGAGACGGGGAAGTCGAGAAGTACTGTCGGACGACATCTTGATGCGCTGGAATCCGATGGTGCCGTCAAAACGTGGAAGGAAGGCAAAACCCGCCACGTCGGACCAACACTCGCCGGTCAGCTTCGTGTGTGAGTGTAACCCTTCATCGACCTTTTTCAAAGCTGTGTACAGCGGGGGTCCACGAACGACACCCGCGTTCTTGCTCCACCAGAGAAAGATATAGATGCTCTCGGCGAATATACACCCCCT # Right flank : CAGGTTGAAGTCGAGTCGGTCGTG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGATGCGGTAGAAACCCAGAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : NA // Array 2 10847-11390 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLM01000009.1 Haloferax sulfurifontis ATCC BAA-897 contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 10847 37 100.0 35 ..................................... ACGACAACGAAGTAGAACTGAGCGAGGACGGCGCG 10919 37 100.0 36 ..................................... ACCGCGTCATGTTCGACTTCGACAACACACTCACAA 10992 37 100.0 36 ..................................... GCGCAGCGAGCACCGCGCTCCAGGCCGACGATGGGT 11065 37 100.0 35 ..................................... AGCACCAACAGACATCACCGGGCCCGCGACGTCGA 11137 37 100.0 35 ..................................... TTGCTTGTCGAACTGGACATACGCCGTGAGAGCGT 11209 37 100.0 35 ..................................... TCGACGTGTCGACGCTATCGACTAGCGTAGGGTCG 11281 37 100.0 36 ..................................... CGCACAGAGGCTCGCATCGTCCCCGTATCGACGCGT 11354 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 8 37 100.0 36 GTCGCAGGGCAATAGAAACCCAGAACGGGATTGAAAC # Left flank : TGACGCACCCGTATTTCGAGTACCGTGTAAGTCGCCGCAAGGCGATCCGACAGCAGGTGATCCTTCTGCGGAAAGCGATTACGGGTGAGCTTGATGACTATCACGCGCTGGAGGTGTCGCGATGAGACTCGCAGTGACGTACGACGTCAGCGACGATACGAATCGTCGACGCGTCTACCGAACGCTGGAACGATACGGAGCGTGGCGCCAGTACAGCGTTTTTGAACTCGACGTGTCGAAGAGCGAGCGGGTTGAACTCGAAGACGAACTTGAAAGCCACATTGAGCCGGCCGACGGAGATCGAGTTCGGCTATATCGGCTTTGCGAAGCTTGCCAGGAGGCGACAACAGATCTCGGAAATGAGCCACCAGATGAACAATCGAACGTCATCTGACGTTGACCTTTTTCAAAGCCGTGTACAACAGGGGTCCACGAAAGTGGACTGCGCTATCATGGGTGGAGCAAGGTTTATACACCACGTCAAGCAAATTGCACCCCCT # Right flank : ACATAGCCGCTTCGGGATGTCTTGGCGGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGGGCAATAGAAACCCAGAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : NA //