Array 1 2980622-2980804 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001775.1 Geminocystis herdmanii PCC 6308 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2980622 37 100.0 35 ..................................... CTCCTCTTTATAGCCTAGGATTGCGAGATAAGTAT 2980694 37 100.0 37 ..................................... TCCTTGTCGTACCATCTTTGATTCGAGTGAGTCGGGG 2980768 37 86.5 0 .......................T.....T..AT..T | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 95.5 36 GTTGAAATAAGACAATACCTTCTATAGGGATTGAAAG # Left flank : CATTACAGTTAGCATTGAGTACCCAGAAAAATAATCGCCAAAATAATCCCACAAAGACAAATTCTTAAGTTACAATGAGGGAAATCGTGCCGCCGATCAAGTTGTTGTCAACCTCTGTTCTGCGAAAAATGAGGGGTAGTTTACCTAGTAATAGGTTTGCTTTCTGTCCCTGATAACTGCTCACTCTGATGCTGCGCACTGAATAAAGTGCGGAAACAAGGGGCACTCCCAGCAACAGGAGTTTGGGTGTACCAATGTAGTGGTTATCCAATCACCTCCGATCAAGGAGGAATCCCAGTTTAAGCGTTAGTTAAAATGTACGAGTTACACAAACTCAAGTTTTAGCCTTACGCAATCGCTGAAACTCTTATAAATTAAGGGATATAGCGTTTTAAGAAAATGCAAAATTCTCGTCAAAATCGGAATTTTTGTATTTTTAAGGGGGGCTTACGCAAACTGCTTCTACAAGCCTTATTTGATAAGGGGTCTGACTAGGGGCA # Right flank : TATTAACAGTGCCGTAGATCAAGTTTTCATAACCTCTGTTCTATGAAAAATAAGGAGTAGTTTACTTCTTCTAAGAAGTTTGCTTTCTGCTCCTGCTAACTACTTGCCCTGATGCTGTCTATCTAAAGATAGAGAAACTAGGCGCACTCCCAGCAATAAGGGTGCAGGTGTACTGCTATAGCGGTTAGCAAATCACTTTCGATCGAGGAAGAATTCTCTTTGAGAATTGAAAGCGAGTCTCGCCATCTGCTTTGACGACACTAATTTGTGATCACGTCATTTGATTTGTTAAGACGACACTAATCTGTTACCGATGACAAATAATTTGTTACTGTACATCGGGGAAAGAAAATTTGTGACAACACATCTATCTAAAATGCGGATGGCGAGACTCGAACTCGCAAGGTCAAGACCACACGCCCCTCAAGCGTGCGCGTATACCAATTCCGCCACATCCGCAGAAACTCAACGAATAATTATTATAACTGATTTTGCGTTAT # Questionable array : NO Score: 5.14 # Score Detail : 1:0, 2:0, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATAAGACAATACCTTCTATAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 2 3673568-3672117 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001775.1 Geminocystis herdmanii PCC 6308 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================== ================== 3673567 37 100.0 37 ..................................... GCACCTCCGCGTTGGCGACCACGGCCCGCTCGACGGG 3673493 37 100.0 45 ..................................... CTTGCCCAACCTCTAGTTATCTCTGGTGCGAGGGATGCTTTTTGG 3673411 37 100.0 58 ..................................... CCGGGTGACCAGACGACGTCGGGGTTGGCGACCACCAGCCACTCGCCGTCGAAGCCGG 3673316 37 100.0 52 ..................................... CTGCGCGACGAGGCAGCGGTGCGGGAGTTCGTCATGCCGACGTCCTGCCCGG 3673227 37 100.0 43 ..................................... TGAAGACGTGCGACCAGCTCGACACCTGCCACGGGATGATGGT 3673147 37 100.0 34 ..................................... GCCCCCCATACCAACGTTGTTGGATCGGTTGGTT 3673076 37 100.0 39 ..................................... TTAAGGGTTTATTGAAAATGATCAGGAAGGTAAAAAATG 3673000 37 100.0 40 ..................................... TTAAATCAATCATTGTTCTTTTTTAATAAACTACTCTTAT 3672923 37 100.0 46 ..................................... GTGTTTCTTCTTTGTTTATGCCCTTAATTGTTTTAACCTTTTCAAA 3672840 37 100.0 46 ..................................... GTAACATCCCGATTGTATAAGCCATATGATCTGGGTCTTTTTCATA 3672757 37 100.0 37 ..................................... CTTCCACCAGCGATCGCCCACCACTAAAGCAGAACCA 3672683 37 100.0 35 ..................................... TTTTAGGGCAACGGATTAACGGCTATCTTATTCGT 3672611 37 100.0 40 ..................................... CATTGTTTGGAAAGAAGCCCCGAAAATAGCGATAAGCCAT 3672534 37 100.0 36 ..................................... ATTTTCTTCAAGGGCAAGAGCGAAATAGAATGATTC 3672461 37 100.0 37 ..................................... TCGAGAAGGTGTTAACCCAAACTCTGCACTTAGCTCC 3672387 37 100.0 42 ..................................... CTTGCAGTAGGGATTAGGGATTCTTGTGCTAATTGGTCATAG 3672308 37 100.0 37 ..................................... TTGTCACCATAGAAGACATAGCAAGAATCCTCTTCAT 3672234 37 100.0 44 ..................................... TCTCTGTAGGTAATGAGTATAAATGCTCTTTGATCCTTTTTGGG 3672153 37 86.5 0 .........T.T.T..................T...T | ========== ====== ====== ====== ===================================== ========================================================== ================== 19 37 99.3 42 GTTAAACTCCACCATTACCCCGTAAGGGGACGGAAAC # Left flank : ACGTACTCAACTGGCGAAATTATTAGAGCAACACTGCGAAAGAGTGCAATATTCCGTGTTTGAATGCCCTTTAGATACAAAAAAATTAGAACATCTCCTATCTACCCGATGGCTAAAAGTGTTGAATTTACAGGAGGATAGTCTGCGGATTTATCCCCTCGATGCCTCAGCAAAGCAAAAAACAAAAATTTATGGAGTCAAAGACAACCCTCCCTATGAATCTCCCGACTATCTTATTTTGTAAAGAAATGTAAAGTTTACTTGTCAATCTGTCGCAGTTAGCAAATAATAGTAACAGAGAGTTTAAAAGATAAACAACGAGATAAGTTAATTTTTTTGTGCAGATTCACTCTGATATTTGAGTTAACCTCAGTTTTTGTCCTTAAAAGAGCTTCTTTACCTTGACAACTTAATAATGTTAAGAAATGTAAAGTGTAAAACTGTAGTTTCTCGCAGACATCTTGTACAAGCAAGGTAGGGCAACGGTTTCCAAGGGTAGG # Right flank : CTGTCAAGACTGAGGTTGCATCCGAAAATAAAAAAGGTGGGCAATGCCCACCCTACAAATATGGATTACATCATTCCCATGCCGGGCATTCCCATGCCACCCATGCCACCCATACCACCCATACCGCCCATGCCACTCATATCGGGCGCGGCTGCTTCGGGTTGGGGTTTTTCTACCACTAAGGCTTCGGTAGTGATGACTAAACCTGCGATCGAACCTGCATTTTGTAAGGAAATGCGTACAACTTTAGCAGGATCAATAATTCCCGCTTGAATTAAGTCTTGATACTCATTAGTTAAGGCATTATAACCAATGTTAACACTGGATTCTCTGACTTTTTCGACAACTACTGAGCCTTCCACACCAGAATTATTGGCGATTTGACGTAAAGGAGCTTCGATCGACTTCATGACAATTTCAGCACCAATTCTTTCTTCTTCAATGGTGAGGGTATCTTTAAAGGTTGCTAATTTAGAACATAAGTGAATTAAAGTAGCACC # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAACTCCACCATTACCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 3 3686973-3685786 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001775.1 Geminocystis herdmanii PCC 6308 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================= ================== 3686972 37 100.0 38 ..................................... GCCACAGGAAGTTGTTCCAAGAGCCGAGGAACGTCAGG 3686897 37 100.0 48 ..................................... CCGGTCTTCGCCGCCGACGGCACGGTGCTGTTCGTCTCGACCCGGCCG 3686812 37 100.0 38 ..................................... TCCCCACCCTCAGCGGACTCGTGTCACCACTGGGGGTG 3686737 37 100.0 49 ..................................... GGCGGGCGGCGGCCTTGACGGCCTTGTCCTTGGCGTCGGCGACGACGAG 3686651 37 100.0 40 ..................................... GCCTGCGGGACGCCCGTCGTGGTGCAGGTCGGTCCGTGCT 3686574 37 100.0 39 ..................................... GCAGGCACAGCGCGACGGTCGCCAGCGGGTAGAGGCCGG 3686498 37 100.0 41 ..................................... CTTGGGCGCCAGCTCGCTGAAGACCAGCGAGAAGTACGAGA 3686420 37 100.0 40 ..................................... TGGATGCCACCAACGCGAAGGACTACGCGCTCATGCAGGG 3686343 37 100.0 36 ..................................... CAGGGCAGTGCCTGGCTGATGACCTCGGAGACGGGG 3686270 37 100.0 36 ..................................... GCCGAGCACGCCCATCGGGTAGAGCACGAGGTGCGC 3686197 37 100.0 38 ..................................... TTGACGAACCTGTCGGACCTCGATCCGCACCCGCTGGC 3686122 37 100.0 36 ..................................... GGAGGGGATCTCGAGCAGGCGGGCGAGCAGCGCCGG 3686049 37 100.0 36 ..................................... TATCTATTATATCCCATATCCCAGAAAAGATCAAGG 3685976 37 100.0 38 ..................................... TTCATGTATTCGTACAAGTCGGTGATTCTTTCATCATA 3685901 37 100.0 42 ..................................... ACCGCAGTAGTGTCAATGGTATAGGCATCTTCCTTGAAGATT 3685822 37 89.2 0 ...........C.A................T.A.... | ========== ====== ====== ====== ===================================== ================================================= ================== 16 37 99.3 40 GTTAAACTCCATCTTTACCCCGTAAGGGGACGGAAAC # Left flank : TCCTTTACTATAGTCTAACGATAGATGATAGTCTTTCTCTGCTATTAACTCAAATTCGAGAATAACTAAATCACTATTATTTGTCCAGTCTAAGTTTCCTAATGGCGATAATGTTATATTCACAAACAACTAAAAAATAAAGTTCGATCGAACATACTTTAAGAATTTATACCATTTTCCAGAAAAAATTTTATCCGTCCAAGATAACCTTCTCTACCAATCCTCCGAATGCTTGATTTTGTAAAGAAATGTTAAGTTAACTTGTCAATTTGTCGCAGTTAGCAAATAATAGTAACAGAGAGTTTAAAAGATAAATAACGAGATAAGTTAATTTTTTTGTGCAGATTCACTCTGATATTTGAGTTAACGTCAGTTTTTGTTCTTAAAAGAGCTTCTTTACCTTGACAACTTAATAATGTTAAGAAATGTAAAGTGTAAAACTGTAGTTTCTCGCAGACATCTTGTACAAGCAAGGTAGGGCAACGGTTTCCAAGGGTAGG # Right flank : GCTATGGTGGCGATGGTACGATCGAACAAATTGGATGATTTTAACTATATCTGTGTCATAATCCCTATTAAATATTAAGAAATCTTACAATAATAATTGAAAATATACTTTTTTTTGTAAAATTTGAATAGTGTTTTTTCTTCACTTATCTTCAGAAAGCCAACCTTGAATAATTTGATTAAAGTTCTCAAGCTAATAAATGAATAATACAGAAGTAACAAATCATCAGATTGCCCTTTCAGTTTTACAAGAAGGGATAAAAAAATTAGCCCAGTGGCTAGAGTTAGATTTTCCTTCGTTACCATTGATACAACACCAGTCAATTATCAAGGCTAAAGAGATTATTTCATGGAAAGAAGAATCAGAATTTAAACCTTTAAATTTACTGTTTGATTCTATTCATATTCAGAATTATAAATCACAAGAAAAAACTCATTATTCACCATCTATTGTTCTCAAAAATAGTTTTCCGATTCTTCCTTCACCTGTATTAAATATTC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAACTCCATCTTTACCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //