Array 1 429008-430075 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024704.1 Fusobacterium pseudoperiodonticum strain KCOM 2555 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 429008 37 89.2 36 T..CA...................C............ TTCTGGTTCAGGTTTCAAATGGGTTGAATTAAAGGA 429081 37 94.6 37 ....................A...C............ TTGGGTTTCAAGTTTATTGTCTAGAGGTAGATAATAA 429155 37 97.3 36 ....................A................ TGAAAAACAAGGATATAAAAACGGATATATAGGTGG 429228 37 100.0 34 ..................................... CAGGTATAGAAGTGGATTACTTTGGTGAAGTAGT 429299 37 100.0 36 ..................................... AGCTTAGTTTTAATATCGTCATCTTCTGGTATACAG 429372 37 100.0 37 ..................................... AGATGAAGAAATAAGACAGGCAACAGTGAAGGTTTTA 429446 37 100.0 35 ..................................... TGAAATACCTAACTTTAGGTCAGAAGAAGATGCAT 429518 37 100.0 39 ..................................... TCCCCTTCAGCAAAGTCAAGCTTTATAGTTTCTTTTGAT 429594 37 100.0 37 ..................................... GTAATCAAACTTTTGTAGAAAGATTTAAGGAAAACTT 429668 37 100.0 39 ..................................... GTAAAATGGGAAATTTTATGAAACAATTCAAATTTGGAA 429744 37 97.3 35 ..........................G.......... TTCTGTTCATTCATTTCTAGGACAGATGTAATTGA 429816 37 91.9 38 ............A......C......G.......... TTCTGGTCGTTGTTATTGAGCTAATAAAGATAATCATA 429891 37 91.9 37 ............A......CA................ AATGATGCTGAAAGACTTGAAAAAGCTATGCTAGTTG 429965 37 100.0 37 ..................................... TGAAAAACGGCCAATGTTTCGATGTTGGCTATAATTA 430039 37 89.2 0 ............A......CA.......A........ | ========== ====== ====== ====== ===================================== ======================================= ================== 15 37 96.8 37 GTTTTAAACCTTGTTATAAGTGGAATACCTTCAATAC # Left flank : ATACCTTCAATACTTAGAAATAGAATTAAATAAAGAGGAAGATAATTATCCTCTGTTTTAAACCTTATTATAAGTGGAATACCTTCAATACTCATTCTGCATTGTTAATATTCAAGAAGTATTAAGCGTTTTAAACCTTGTTATAAGTGGAATACCTTCAATACGGAGTGACTTAGCTCCATGTGATTTAGAAAAGTATGGGTTTTAAACCTTGTTATAAGAGGAATACCTTCAATACAATTGTAATTGGTTCTTGGCAGTTCTCGATTACAATTGTTTTAAACCTTCTTCTACTGGACTTCTAAAATGTAGTAATTAGTAGCATAAATAAATTAATCAAGTATATTAATTTAAAAATTTTATAAAAAGTTTTATATAAAAAAGGACTTTCTTTCAATTCTCATTATAACATACTTCATCCAAAAACATAAACTTATTTTTATAATAATAAACTTTGATAATAAAAAATGAACCTTGATAAAGATTCATTTAATTTTTAA # Right flank : CTACAGAAAAGCATTAGTTAAATATAACTATCTTGATGAGTTTTAAACCTTATTCTACTGGACTTTTAAAATATAGTAATTGGTCGCATAAATAAATTAATCAAGTATATTAATCTCAAAATCTTATATAAAAAAGCACTTTCTTTCAATTTTCATTATAACATACTCTATCCAAAAACATAACCTTATTTTTATAATAATAAATCTCTGATAATAAAAATGAACCTAAAAAAGATTCATTTAATTTTGTTTTTAAAACCTTATTATAAGTGGACTGCCTTCAATACTACAATTATGAATGCTATTCAACAAATTAAATCACTTGCAAAGTTTTAAACCTTATTATAACTGGACTACCTTCAATACAATTGTAATTGGTTCTTGGCAGTTCTCGATTACAATTGTTTTAAACCTTATTATAAGTGGACTGCTTTCAATACAGTGGATTATTCCCATTAGGATTTTATTATAATGCTTTAAAGTTTTAAACCTTATTATAA # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAAACCTTGTTATAAGTGGAATACCTTCAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [7-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 1437025-1434475 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024704.1 Fusobacterium pseudoperiodonticum strain KCOM 2555 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1437024 36 100.0 30 .................................... CTATAACTAAACTAATCGGACCACCTAGAG 1436958 36 100.0 31 .................................... CTTACTAAATTCATTATACATTCTCACATTT 1436891 36 100.0 30 .................................... AATTGAATTTAAGATCGAAAAAATAGGTGA 1436825 36 100.0 30 .................................... CCTAGTTACATCGTCTCGTAACTGTATACC 1436759 36 100.0 30 .................................... CTGATGTAGGTGAAGCTATACAACCTATGG 1436693 36 100.0 30 .................................... AATAGAAATTATTTTCATATTTATAAGTTA 1436627 36 100.0 30 .................................... TTAAAAAAAGGTATTGACATCTTTTATACT 1436561 36 100.0 30 .................................... TAACATACTTTTTGATGAAACAACTAATTT 1436495 36 100.0 30 .................................... GAGTTGCTATAAATGTATGTAAACAAGGAA 1436429 36 100.0 30 .................................... CGTTGTTGTTGCTTTCAGCATTTACAGCAC 1436363 36 100.0 31 .................................... TAAAAAATGCAACTTATAAACATCTTGAAGA 1436296 36 100.0 30 .................................... TTGTTTTAAATGGTATGGTATATTCATTAA 1436230 36 100.0 31 .................................... TCAAGATTATTCAATTTTCAATGTCCTTTTA 1436163 36 100.0 30 .................................... TTGGTTGTGATGAAATAATAATCCCTTCTA 1436097 36 100.0 30 .................................... TTGGTTGTGATGAAATAATAATCCCTTCTA 1436031 36 100.0 30 .................................... AAGGAATATACATATTCAGTTATGGTGAAA 1435965 36 100.0 31 .................................... TTATAAGTTCCTGTATTTCCAAGCTCTACTA 1435898 36 100.0 30 .................................... CGTTGTTGTTGCTTTCAGCATTTACAGCAC 1435832 36 100.0 30 .................................... AAAAAATTAAAAGCTATCTTAAATAAAAGA 1435766 36 100.0 30 .................................... CTTATCTCTTTTAGTAATTGTAATCGAGAA 1435700 36 100.0 30 .................................... AGTACTCCAATATCTCCTAACTATGGGTGA 1435634 36 100.0 30 .................................... TCCTAAAAATGACCTTGTGAGAGCTTGTTT 1435568 36 100.0 30 .................................... ATGCGGTACAAGGATTTAACCAAACAGCAT 1435502 36 100.0 30 .................................... TCAAATATACTTCGTTCTGATGTTTTATAT 1435436 36 100.0 30 .................................... TAGCATTTAGTGAGTAAGTTGCATTATTTA 1435370 36 100.0 30 .................................... ACTAAGTACTACTTTGAACACAAGGAGGAA 1435304 36 100.0 30 .................................... AGAATACCATTTCAATTGGAGTACCGTCTT 1435238 36 100.0 30 .................................... TAAAAGCCAATGAAGAACTTGAAAGAGAAG 1435172 36 100.0 30 .................................... AGTACTCCAATATCTCCTAACTATGGGTGA 1435106 36 100.0 30 .................................... TCCTAAAAATGACCTTGTGAGAGCTTGTTT 1435040 36 100.0 30 .................................... TTTTAGTCTTTAAATTATTGTGTATTAAAT 1434974 36 100.0 30 .................................... TGTAGAGGTCCCAATAGAGAGTGAGAACAC 1434908 36 100.0 30 .................................... ACTATAAATTTGATGTAGAAGAGGCAGAAT 1434842 36 100.0 30 .................................... ATACTTATTTTTAGCACTCACTAACACAAG 1434776 36 100.0 31 .................................... TCCTTGTCTTCTTTAACTGCAAGGTAAATCC 1434709 36 100.0 30 .................................... AAACTCCATTTGTACATACATAGCTTTTTA 1434643 36 100.0 31 .................................... TATCTGGCTAATTGGAGGATGGGATACTCTC 1434576 36 100.0 30 .................................... TTATTCCAATTTTTGAAGATAAATCTCTCA 1434510 36 72.2 0 ...............C...AA.A.AT.G.G.C..C. | ========== ====== ====== ====== ==================================== =============================== ================== 39 36 99.3 30 GTTTGAGAGTAATGTTATTTTAGATAGATATAAAAC # Left flank : TACTATAAAGAATTAAAAAATCTAAGTGAAAATGATTTTTTTGATGAAACACTTGAAATAAAAGAAGTTTTAAGAAATTATGTTACTAAATTAGTTGAAAATGAGTATTCTATAAAATTAGAAGAAGATTTAGATATCAGTCAAATTTTAAAAGCATTTGGAATAAAGTTTCAAAGAAATAAAGATTTATTATTAAATTTATTTGAATGGATTAAGATATTGAATGAACTTCTAGGCTATGAAATTTTTTTCTTTATAAATTTAGAAAATTTTTTATCTAATGATGAATTAGTAGAATTTTCTAAGTTTATATTGTATAATAAATATAGAGTTGTTTTTTTAGAAAATTTTAATAGAAATAAATTATTTGATGATGATAATCTAATTATTATAGATAATGATCTCTGTGAAATTTTCTAATCTATTTAATAACATTGAATGATTCGTAACCATTTTGATTAATTTCAGCTTTCACTATAAACCAAAATATATAAATTGAG # Right flank : AATTTTATCAACACCATTTATTATACAACCTTTTTTAATTAAATATAGCTTCAACAAAGTCTTTAGCATTAAATTCAATTAAATCTTCGATTTTTTCACCAAGACCTATAAATTTAATAGGTTTTTTTAATTCTTCAGAAACAGAAAATACTATTCCACCTTTAGCTGTTCCATCAAGTTTAGTAACAATGAAACCTGTTAAATCAGTAACTGAGTTAAATTCTTTTGCTTGATTTAATCCATTTTGCCCTGTAGTTCCATCAATAACTAATAAAGACTCGTATTCTTGTTCACCAATTTTCTTTTTGATGATATTATTTATTTTTTCAAGCTCTCTCATAAGATTAGCTTTATTATGTAATCTTCCAGCAGTATCTATTATAACAACATCTGCTTTTGTTGCTTCTGCTTTACTTAAAGTATCATATACAACAGATGCAGGATCTGCTCCTTCTCTTCCTTTAACTATATCAACATCTGCTCTTCTTGCCCATTCTTCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAATGTTATTTTAGATAGATATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 1880902-1882301 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024704.1 Fusobacterium pseudoperiodonticum strain KCOM 2555 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 1880902 37 97.3 36 ....................................T GTAAATTCATTATAATCGGACTCAATGTTCCAGTCT 1880975 37 100.0 38 ..................................... TGTTCCGGATTAAGACGCTTAATAAAACCTCTATTATC 1881050 37 100.0 39 ..................................... TCAGCACTAAATATTTTTTCTAATCCTTCCATAATTTAT 1881126 37 100.0 36 ..................................... TCTGCTCTCCATCTCTTAGGTATCCCATATTTTTCA 1881199 37 100.0 36 ..................................... GTTCCTACTGACAAAGAGCAACATTCATAACAAGTA 1881272 37 100.0 38 ..................................... TTTAAAGCTTTATAAATTCCAAATCCAATACCAGCTAT 1881347 37 97.3 38 .......G............................. CATTGATTTAACATAATTATAATTACTTCCATTGTGTG 1881422 37 100.0 40 ..................................... CATATCTTAAATCTGTTGCTATGTTTATTGTTTCTATAAA 1881499 37 100.0 46 ..................................... TCGAAGCTAGCATTAACCCTGTTCATAGGAACTTCCATTCCTAAAA 1881582 37 100.0 36 ..................................... TATCTCTATATAAACCCCCAATTTTCAAACCTACCA 1881655 37 100.0 40 ..................................... TGTTTGAGTTTTAGTGTCAAAGTGAAACAAGTTCAATTTG 1881732 37 100.0 40 ..................................... TGTTTGAGTTTTAGTGTCAAAGTGAAACAAGTTCAATTTG 1881809 37 100.0 40 ..................................... TGTTTGAGTTTTAGTGTCAAAGTGAAACAAGTTCAATTTG 1881886 37 100.0 40 ..................................... TCATTTATGACACTTTTAACATACGATTTATTTTTATTTT 1881963 37 100.0 40 ..................................... ATATAAAAAGAATGCTAAAACACTAAACCCCACTAATTTA 1882040 37 100.0 39 ..................................... TTTTTTATCCCTTTACTTGTTAAAACTTCTCCTAAATTA 1882116 37 100.0 41 ..................................... TGAACGCCAATATCATCACATTTTATGCTATATTTTTGTCA 1882194 37 100.0 34 ..................................... CCCAAAGCATACACTGTACTTCTACAGTGGTATT 1882265 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ============================================== ================== 19 37 99.6 39 GTATTGAAGGTTATCCATTTATAATAAGGTTTAAAAC # Left flank : AAATAATTGTTTCAATTTTTTCTGGAGAAAGAATAATAGATTTCTCTTTTGTTTTTACTAAAAAACTATTTTTTTGTATTGCTATACTTGCCCCCTCAGTTGAAATATATAAGTCCATAATATTCCTCCTATAATTTTAAAATAAAATGAATATAGAAAATAAATTTCAAAATAGAAATACTATACTATATATTAGCACAGTATTTAAAAATTTAAATAATTTTTTTATAAAAAATAACTTTACTTTTTTATAAAAAAGGTATACAATAAACTACAAGTTCATTACTTGTAATTTTTAGTTAGCTATGAGCAAATTTTTAACATTTTATTTTTTTATTTATATTAATAAAAAATCTACACACTTTTAAGAAAAAAATTAAAAAAAGATATTAAATATTTAATATAAAAAGACTAAAAAATCGAAAAAACGTTCAATTGTTGCTACCCACTAAAAATTACATTAAATACCTATAAAATCAATATTCTTATTCAACTTAAGG # Right flank : TAAAATATATTTCAAAGAAGGAGTTTTAAATGATTTCATTTGGCAAAAATATTCAAAAAAGAAGAATTAATTTAGGTTTAGATACTAGTGACTTAGCAAAATTACTTAATTATTCGAATAAAATCTATATAGAGAAAATTGAAGCTGATAAAATGTATCCATCTACTAAAAAAATTCCAGATATAGCAAAAGCTTTATCTTGCGATATAGAAGATTTATTTAAAAATATTGAATTTGAAGATGAAGAGAATGACTTTATTTTTATAAAAAAAATATTAAAATCTATTAAATCCTTTGAAGAAAATAAATATCCAAAAAGAAATTTAGCTTTTTCGTTGGATATTTGTAAAAAACATTATTTTTCTTTATTTGATAAATTCATACGAGAGGATTTTGTATTAAAAATTAATAAATTAATTATAGAAACTTACTATGAAAATAATGTAGAATTAGAAAAAATTGAATACTTCTTTGAAGAAAAAGAATATGAAATATGTTTA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTGAAGGTTATCCATTTATAATAAGGTTTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 4 1886461-1888597 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024704.1 Fusobacterium pseudoperiodonticum strain KCOM 2555 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 1886461 37 100.0 37 ..................................... TAAATCCTACGACTTTTAACACTACAACGATGTTTTG 1886535 37 100.0 38 ..................................... TGGAATTACCATTTATTGATAAGGTTCTTTCTTGTAGA 1886610 37 100.0 36 ..................................... ACATTACGATAATTACTATGCTATGAATCTATTAAA 1886683 37 100.0 42 ..................................... CCTTCTATGATAGATATGTTTGTAAGAATTCCTCTATCAGAC 1886762 37 100.0 35 ..................................... TCTTATTAGCTTGCATTGCAAGCTTAAAGACATTA 1886834 37 100.0 39 ..................................... TCTTTATCTTCACCTATTGCTAGGTAAAGAGAAGTAAGT 1886910 37 100.0 42 ..................................... ACAGTCAAAAGTTCATACTTTTTCATAATCTTTCCTCCTAAA 1886989 37 100.0 40 ..................................... CAAGTGATATTATTTTTCTCATAGTAATTCTCCTTTTTAG 1887066 37 100.0 37 ..................................... TCTAATTCTTTTGAATCCTTTAATTTTATGTTTTTAA 1887140 37 100.0 38 ..................................... TTTGGTTATCAACTACGAACAAAGTACCAATTCCCATG 1887215 37 100.0 39 ..................................... TATAATCTCTTAGACGATCACCAAGCTTTTCCCTTATAA 1887291 37 100.0 36 ..................................... TCAGTCAACTGACTAGCAACCATTTTTAACCCCATA 1887364 37 100.0 38 ..................................... TGAATTAGCCAAATAATATCCACCGAATGCGTCATTTT 1887439 37 100.0 38 ..................................... AGTCCAATTCTGGATATTGTGGAAACTTAAAAGCCATA 1887514 37 100.0 40 ..................................... CCTCCATAGACTGTATAACCTTGATTAGTTAAGAATTCTA 1887591 37 100.0 37 ..................................... TATCACACTCCTAGGATGAAATGAGAAGCAACACAAC 1887665 37 100.0 39 ..................................... ACACTCTGTTTTAGAAAAATAAGATTTGTATTCTTTTAC 1887741 37 100.0 35 ..................................... TTTAAATACTACTCCAGTCTTTATTTCATCTTGAT 1887813 37 100.0 35 ..................................... TTTAAATACTACTCCAGTCTTTATTTCATCTTGAT 1887885 37 100.0 37 ..................................... TCGATTTCCCCGAATATAAAGTCTCTTACACCAGGAA 1887959 37 100.0 37 ..................................... TCTAGAATAAAATGAGATAATACACAACTAAGCCAAA 1888033 37 100.0 39 ..................................... ACACTCTGTTTTAGAAAAATAAGATTTGTATTCTTTTAC 1888109 37 100.0 39 ..................................... TCAGTTATAGGGTATTGCAACCCTAATTTAATATCTTTA 1888185 37 100.0 36 ..................................... GTTGGCTTGAACAGCCTTTATAAGTCCGCCTTGACT 1888258 37 100.0 37 ..................................... TCTTAAATTTGGTAGTATAGGGCAACTACCTTTAATG 1888332 37 100.0 39 ..................................... TTATTAGGTTATAATCCCAGCACCAGTTAACTCTATCAT 1888408 37 100.0 39 ..................................... TCTATGTTATCCTTGTTGAAACAGTGTATATTATTTTTA 1888484 37 100.0 38 ..................................... ACTCTTGAACCGTTTTAAGTTTATTCCTGTCTTCTATG 1888559 37 97.3 0 ....................................A | TT [1888592] ========== ====== ====== ====== ===================================== ========================================== ================== 29 37 99.9 38 GTATTGAGGACTATCCATTTATAATAAGGTTTAAAAC # Left flank : TTTTAGTTATTATTTAAAAGTTTTAAAATAAAGTATTAGATAAGAAATATAAACAGAATTCAGTTACAATATACAACTAAAAGAATAAATTAATCGAATAAAATAATTATCTAAAAATTACTTAATGAAAAAATACAAATAAAATCTATTTAAATAAGTTTACAAAATATTTTTTTATAATCCAACATTTATAATTTAATTGATACAATCTTTTTTATAAAAAATAACTTTACTTTTTTATAAAAAAGGTATACAATAAATTACAAGCTTGTTGCTTGTAATTTTTAGTTGTCCATGAACAATTTTTTATCAATTAATATTTTTTGCTTATACTAAAAGTAAAATTGCTTATATTTTTCATAAAAATAAAAAAAAATATAATAAGTATTTAATACAAAAAATAAAAAAAGACTAAAAAATCGAAAAATTGGTTAATTATTGCTACCCACTAAAAATTGAATTAAAACGTCATAAAATCAATATTCTTTTTCAAATCAAGG # Right flank : AATCTACAGATAATTTACCCTTCAGTTATTTGTAGGTTGGAAGGAGGTATAAATGAGGAGTTATACTGTTATAATTTTAGGGAAAGCTTCAGGAGAAGTGATCCCTAAAAGCGTAAACAATAGAATCAAAGCCTTCATAAGAAAAAAAATATGAAAAAGGTGTTTCTATTGAAACTCTTAAAGGACTTGTTTTAAAAGCGTTTGAGAGAGATAATATAAAAGGATCTCTTACAATTATTAAAGATGGAGTAAAAATTTTTAGTATAGGTAATTAATTAGATAAAAATTAATATAACTTATAGAAATATTTTTTTAGAACATTATTTGTATAAAAAAAGCCAACTACATTTTTTCTGTAATTGGCTTTTTTATTAGTCAAAATAATAATTATCAACTTTATATAAAATTTTCTCTTTTCCTCTGTCCTTAGATGGTGGTTCAATAAATTTTCTTAAATCTGCTTCATTTACATTTTTTTCCTTTAATTCATCTATAATAAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTGAGGACTATCCATTTATAATAAGGTTTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 5 2413873-2410775 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024704.1 Fusobacterium pseudoperiodonticum strain KCOM 2555 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 2413872 37 100.0 37 ..................................... TATATGGAAATATCGGAGAAGATTTCGACTTAGATAG 2413798 37 100.0 36 ..................................... TTTCAAGATATGCTTCAATACTTTTAATGTTATTTA 2413725 37 100.0 41 ..................................... AACTCCACTGATTCTATAACATCAGTTCTTGAAATAAATGA 2413647 37 100.0 44 ..................................... TCAAAGAGTTACCTAAACTATCAGTTACACGAACTTCAACACCA 2413566 37 100.0 37 ..................................... TCTTCTTCTTTTATAAGCTTAGTATAAGCCAATTCTT 2413492 37 100.0 39 ..................................... CGTTGTATGTTTGCTGTATCTCCTATTAACAGTACTACT 2413416 37 100.0 38 ..................................... CAGTAATAGTTGTACTTGGTAAATCTATTTCTTTTTCT 2413341 37 100.0 35 ..................................... CCAAGTGAAGCAACTGCTTCTTCTAAAGCTTCCAA 2413269 37 100.0 36 ..................................... TGGATGTAATCTAGTGAATTGCTGGGAAGTCCTAAA 2413196 37 100.0 39 ..................................... TTATAATATCTTCACCATCAAACATTTCTTCTACTTTAA 2413120 37 100.0 40 ..................................... TCTCCCTCGTGGTTAACTATTTTTAAACATCTTTTACTCA 2413043 37 100.0 39 ..................................... TCATTCTTTTTATCTCCACCTTGAGGTCTTGGCATTTCA 2412967 37 100.0 34 ..................................... TAAAACCAGGCGTTGTAATACCCATCAACCTTAA 2412896 37 100.0 39 ..................................... TTTAGGAGAAGAAAAATCAGTCCAATTTTGGAAAGAAGA 2412820 37 100.0 35 ..................................... TGAATATTATAGTATGGCTACAGAAGTAATGGACA 2412748 37 100.0 37 ..................................... TCATATCTATTAGATTCTATTCTATCATTTATAGTAA 2412674 37 100.0 45 ..................................... TGGTCATACAAATAATCAAACACTGTAGCTCCCATTTTACCTGGA 2412592 37 100.0 36 ..................................... GCTCGTACTTATACACAGTATTATCTACAACTCCAA 2412519 37 100.0 38 ..................................... TATAGGTATCAAAAATTCAACTGTAGCCGTTTTTATGA 2412444 37 100.0 38 ..................................... CCATCTAGATTAATAAATCTATCAAGTAATCTCGTTAA 2412369 37 100.0 35 ..................................... GTAACTATCCTAACCCTTGGATCATGTCCTTTTAT 2412297 37 100.0 39 ..................................... TAAACCCAGCTAAATCTGCTAATGATATTAATTTTTTCA 2412221 37 100.0 37 ..................................... CGCAGCAAGTAAATCGTATGGGTAATATTACTATTAA 2412147 37 100.0 36 ..................................... TTATATTCATATATCAAACTTAATGCTTGATTATTG 2412074 37 97.3 37 ......A.............................. GTTATTAAGTCTAAAGCTTCAGCTTTAAAATTATCCA 2412000 37 100.0 35 ..................................... AATAAGCTATTGAATTTTTCCTTTAGTCTCATATT 2411928 37 94.6 37 A.....A.............................. TCTTAGTTTATCCCCTTCCCCAAATTTCAGAAATTAA 2411854 37 97.3 35 ......A.............................. AATAAGCTATTGAATTTTTCCTTTAGTCTCATATT 2411782 37 94.6 37 A.....A.............................. TCTTAGTTTATCCCCTTCCCCAAATTTCAGAAATTAA 2411708 37 97.3 38 ......A.............................. TTAAAAGTTTTTAATTTACAAACTTTATACCAAACTGC 2411633 37 97.3 37 ......A.............................. ATAATCTACTACATATATTGCATTATTATCTACTCTT 2411559 37 100.0 38 ..................................... AGAAGTCACTTATTACCAATGTTTCTGATCTCATTATT 2411484 37 100.0 37 ..................................... ACTTTGTCCTTCTCTGTAAATCTAAGCTTATCTAATT 2411410 37 97.3 36 .........A........................... TCAATGTTTTCTCTTGCTTGTATATAGTCTTGTATA 2411337 37 97.3 37 ......A.............................. TCTTAGCTTTGGTTCTCTAAATATCCATTCACTTGCA 2411263 37 97.3 35 ......A.............................. TTATTTATTATTGATGTAGTATATAGATTATTATT 2411191 37 97.3 39 ......A.............................. TAGAGTTTTATTATTAAGATTTATCCTACCTGATGCTAG 2411115 37 100.0 38 ..................................... AAACTATCCACTGCATTAGGATAAATACCGTATTTTTC 2411040 37 97.3 38 ......A.............................. TCCTGTCTTAGTAGAATACACTATGTTTATATGTTTAG 2410965 37 100.0 39 ..................................... TACCGTACTTATTATTCTTTTTTCTTGTGCAGTCATTTT 2410889 37 97.3 41 ......A.............................. TTTAAATTAACAAAAATAGAAAATCCTAAAAACATAATAAA 2410811 37 91.9 0 ......A............................GA | ========== ====== ====== ====== ===================================== ============================================= ================== 42 37 98.9 38 GTATTGGAGGTTATCCATTTATAACAAGGTTTAAAAC # Left flank : ATGAGATGGCTACATTTTTCTGATTGTATGAATAATGGAGGAACATCACAATTATTTATAGATTTCTCACCATCAGAAAAAGGAGTAAAAGGACAAGTAGTTAGATTTTTACATGATCCAGATGAAATAGCAGTTATAGCTGATAGCTTTGATGAATATTTAGAAGAATTAATGGAATATGAATTAGATTTTATAAATGAAGATACAGTTGACTAAAAAAATAAAAGTACTTTACTTTTTAGTAAAATAGGTGTACAATAAATTACAAGCGTGTTGCTTGTAATTTTTAGTTGCCTATGAACAATTTTTTAACATTTTATTTTTTTATTTGTATTAAAAAGAAAATTGCTCGCTTTTTTTAAAAAAGCAAAAAAAAGATAATAGATATTTAATACAAAAAATGAAAAAAGACTAAAAAAACGAAAAAATGATTAAATGTTGCTATCTACTAAAAATTAAAACAAAAGGTCATAAAATCAATATTCTTATTCAAATCAAGG # Right flank : TATTTATTTAAAATATAAACTGTTACAGTTAGTAATTTATATTATTGACTTGTGGCAGTTTTTTATTTTCTTATTATTTGTTTAAGTATATAATCATATTTATTTTTATTTTCTGTAGTATTTACCTATTATAGTTCTTGTTAATATTAATATATTTTAAAAATAGAACAAAAAGTATAAAAAAATAATATTGTAAAATGATATAAAGGGAGTATAATAAAAAAAAGAAAAGTTATATTTATAAAGAGGTGTTTTAAAATGACAAAGAATTTTGCTCATAGGGGATTTAGTGGAAAATATCCAGAAAATACTATGCTAGCTTTTGAAAAGGCAGTTGAAATTGGAGCTGATGGAGCAGAACTAGATGTCCAACTTACAAAAGATGGAGAAGTAGTTATAATTCATGATGAAACAATAGACAGAACTACAGATGGAAAAGGCTATGTTGTAGATTATACTTATGAAGAGTTATCAAAATTTAATGCTTCATATATCTATAC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTGGAGGTTATCCATTTATAACAAGGTTTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //