Array 1 11412-13854 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEDR01000058.1 Veillonella atypica ACS-049-V-Sch6 contig00040, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =============================================== ================== 11412 34 91.2 45 ....T........T..A................. ATTCTTATTGCTGGTTCAGTAGGTTCTGTTGAACTAGAAAAAATG 11491 34 97.1 44 .............T.................... TACGCAAAGCGATGGAATTGGATCCTGAAAACACGATTGAATAA 11569 34 97.1 43 ...............A.................. TCAATACATTAAAAAATTCTAATATTTTAGATGATTTAAAAGG 11646 34 97.1 40 .............T.................... TAACAACTTTACTCTATAAAGTGAGGAATATCCTTATTTG 11720 34 100.0 45 .................................. CCTAGACGATGACGACGATTTAATCTAAGGAGGCACATATGGAGA 11799 34 100.0 46 .................................. AAACCGCTGAGAAAGTAGAAAATAGTGAGAAATCTCAATCTACTGA 11879 34 100.0 45 .................................. TATGATGAGTTATCTAAAGCGATTGAAAACGGCGATGATGTATAA 11958 34 100.0 46 .................................. TGCCTGATGAATTGCAAACTGATGATTTAGAATGCTTGGCTACTGA G [11977] 12039 34 100.0 44 .................................. TAAACATATAGATATGTGTATTCATGATGAAGTGCAAAAAGTCA 12117 34 100.0 46 .................................. CATATGGTATGTGTGGGATTGGTTGGAAGTTTGAAGTTGTTAGTAG 12197 34 100.0 44 .................................. CGTACCTGTACCAAGATTCACTCGCTCGTCGGATGAAGGAACTG 12275 34 100.0 43 .................................. TGGTCGAAATGATGAATACGGCCAATACTGGCGAAAACTCATG 12352 34 100.0 40 .................................. ACTTAAACAATTGTTTGTTATAACGTAGCGAGGTATAAAG 12426 34 100.0 45 .................................. AACAATGACATTACATATAGAGACAACAAAAGAAAACATATTTGG 12505 34 100.0 44 .................................. AGAATTTTATAAGACGGCTCAAACGTAGATATAAAAAACTGGGG 12583 34 100.0 38 .................................. AAAATAGTAGCTGGTATCGTAACTGCATTATGTTCTGG 12655 34 100.0 41 .................................. ATAAAAAACAGGAACTCTTCATTCAGTCAATAAAAGAATTG 12730 34 100.0 42 .................................. TAAGCGACATTTCAGAAATACCGATTATGGATATTGACGACG 12806 34 100.0 45 .................................. TAACAATTATGTAGCGTTTCAATCATATTAAACTTTAATTTCTGG 12885 34 100.0 45 .................................. TGTATTTTTCATTGTTTTATGTTCCTTTCGCTTTAATATTCTGTG 12964 34 100.0 47 .................................. AATTTCTACCCTATCATCGAATATGGTGGCTTGCTTTATGAAAGTAG 13045 34 100.0 42 .................................. AAGAACAGTAAAGAAGATGCAATCAACGTTGTTAATAACTTG G [13064] 13122 34 100.0 44 .................................. CGGTAAATTAGGGTCTAATGATTGGTGTATGGAACAGGTTAAAG 13200 34 100.0 40 .................................. GTATACATTGTATCGTTTTTGATGTCATATACAGAAATTG 13274 34 100.0 43 .................................. GATTCTAAAATCTGCTCGTACATTCATAGGAAATGCGATTAAG 13351 34 100.0 44 .................................. TTTCAAATGTGTTAAAGTCGATATATTCGCAAAAGTTATTATAG 13429 34 100.0 45 .................................. TAACTGTACGCCTATTTACGGATAGAATGTATATTTCTACTGTAG 13508 34 100.0 43 .................................. AGCGTTCTTTTTCAATAACGCTTGCATATCCGCCTCTAATTGG 13585 34 100.0 46 .................................. CGGCTCGATTGAAATAAATCGCATTGACTTTTATACCGCATTTTTG 13665 34 100.0 43 .................................. AATTCTGAAAAAGCGTTATTAAAAGACCAAAACGCTAAATTAG 13742 34 100.0 45 .................................. GCGTTGCTATCTTCACTTGCCATACCAGCAATATGTGCGAATAGG 13821 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== =============================================== ================== 32 34 99.5 44 TTTCCGTCCCCATCAGGGGATTATTTAATTTAAC # Left flank : ATTAATCCGCATAGACCATTCCATACGTATCCATCATTACCGTTTAAATCGAAACATGATAAGCAAATAAAGTATATAACAACACCACTAACAATTCCGCAGTCATTGTCTAAAACAGCAATGGAATTGATGGATTCCATATATACAAAAAATTCAAATATTACGGAAGAACGTCTTACTATGATGAAAACATTATTTACTGAACGGTTAGACATGCTAAATACATATCTAACGAAATTAAAGTAATTAAATATTTAACAGAATAAATTCAATATCAGAATAAAAGTAGCATTACTAACGTATAGACATAGATGGCATATGCCAAATAATCTATATTATGTATAGTAATGCTACTTGTTTATTGTAAATTACATCATAATCGAAACCTAGTCAAAGTTCAGGAGATAGATAGAATAAATTTGGGGAAATGATATTTCAGGAATCCTTATATTCAAATAAAGCCTTATAGTAAGCCTAATAATTTTAACAAAGATAAATAG # Right flank : CCCTGTATCTGAAACAACCGATGTTATCTAGCCATAAATCACCATTAACGGCGGAGATCATAAATCGACCTCAAACAGTACTTTAGCACACTAAAATAACACCTATAAACCGCACCATTATCACAACGGCGGAGATTGTATTTCACAAGGTTATAATCTAGATATATTATAGCATAAAAAAACAAAAAAATACAATAGTAGAATCACCAATGCCAGTACATTAGATATATGCAGCTAATCAAACAAAGATAATTCTACTATTGGTTATTAAATAATATTTCTAATCAATGCATTACAATATGATACAATCTTGCTCTTTTCGTTCGCCAATTCCCCATGTATAAATATTAATAATATCATCAAGTATATATACTCGTAGAGAATCCTCTACGGGATTGATAATTCGACTTGCCCGACGCATCATTACATCGTATTGTTTTCTATTGAGCAATGCCTCAAATGCAGATTTCTGAACACGTACGCCATATCGTTCTAAACAT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCCGTCCCCATCAGGGGATTATTTAATTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.60,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 24507-23720 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEDR01000058.1 Veillonella atypica ACS-049-V-Sch6 contig00040, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================================== ================== 24506 23 91.3 50 ........G.......T...... CTTGAATAAAAACATGGATATTTACACTACACACATAAGTTAAATTAAAT 24433 23 100.0 53 ....................... TTCATGCGGTAACCAAATCGATTGCCCCAGGTCTTTTGTTGGTTAAATTAAAT 24357 23 95.7 54 ........G.............. CCTGTGCTAGATCACGTATCAACGTAACTGCTACTTTTTCCAGTTAAATTAAAT 24280 23 87.0 54 ....T...G.............T GTGAAAAATAAAGGTACTTGTTAGGATATTCTTTAGGTCTAAGTTAAATTAAAT 24203 23 95.7 54 ........G.............. GAGTAGATTTCTTCTTCGATGTCGAAGTCATCCATTTTGATTGTTAAATTAAAT 24126 23 91.3 56 .....T..G.............. TTAAAGCCTTTTCAGAATTAGCTTTATTGTTCGCATTTAATTTCGTTAAATTAAAT 24047 23 100.0 53 ....................... GCTTGCGAACCAATCGCATATGTGTATTCAGTTAATGCCTCGTTAAATTAAAT 23971 23 100.0 54 ....................... GAGTAGATTTCTTCTTCGATGTCGAAGTCATCCATTTTGATTGTTAAATTAAAT 23894 23 91.3 54 .....T..G.............. TTCATAGCCTCAAGATTATCCTTGAGCAACTGTTTTTCGCTAGTTAAATTAAAT 23817 23 87.0 53 ..........C.......A..T. AATATCACACTCAATAATATTAACAATCAAAATAACATCCCGTTAAATTAAAT 23741 22 82.6 0 .C-...............A...T | ========== ====== ====== ====== ======================= ======================================================== ================== 11 23 92.9 54 AATCCCCTAATGGGGACGGAAAC # Left flank : TCTAATCTCGGACTAGATCCGATTACGACCATGCTTGGCATGCAAAATGGGGCTAGTCTAGGGTTGTTCTTGAGCCCTATCAGTCCTGTTATGGTCGGTGTAGCAGGGGTAGCACATATTAAGTCGGTAGATTTACTTAAGCGCACCTCTGTGCCTGTGCTTGTAGCGCTTATTACGAGCTGTGTGGGGATATGGATATTATACTAATATTAATGGATAATATAATAACGAATACTGTAGCGTAAAAATAAGAACCCCCGTTATCAAAATAAATAATGGGGGATTATAGTACTAGTTTCTTTACCATGTTATGAATTATCTGTTTTTATATGTAAGTTTTAATTATCTAAGATATAGCACTTCCTTAAATAATTTGTGCTATAATATACATAAATATTAATCCTCTAAAATTAAATCTCCGCCGTTGCGATAGCAGCGCGATTTATAGATGTTATTTTAGTATGCTAAAGTACCTTTTAAGCCCAATTGTTAAATTAAAT # Right flank : ATCTAACTCTAACTCTAATTCTTTCTCTAACTCTATTTTTATCGTTAACTAAATCCTCTTATAGGGGAATGAGTCTTATCTCAAAAACTCATATGAGTACAAAAATATATCCAGTATATTCTTTTTTGTGAATATACTGGATTTTTTGTATAAATAAGACTATTTCTCTATTGGTTTTAAACATGGATGAATATATAATGAAGATGACAAGTCGTTTATTTCTTAATAAAAGTTTGGAGGCGATGTGATGGGTAAATGGGATGCACTGGTAAAGGGTGCATTGCTACATGATATCGGCAAAGTCGTGTATCGTGCTAATCAAGGATCTGATGCACATTCTAAGCGCGGCGCTGCTTTCATCGAACCCTATTTTTCAGATATGGGCTTGAAGCAAAGTATTACTCATTGTTTGAAGTATCATCATGGGAAAGAGCTTAGTAGGGCTCAATTAAAAAATGATGATTATGCATACATTGTGTATGAAGCGGATAATATTGCTG # Questionable array : NO Score: 4.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.61, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCTAATGGGGACGGAAAC # Alternate repeat : GTTAAATTAAATAATCCTCTGATGGGGACGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //