Array 1 4985-5541 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMAY01000020.1 Lactobacillus sp. B40 sequence020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 4985 35 100.0 30 ................................... TGTGATCCGCCGTATTTTGGAACAAGCCGA 5050 35 100.0 30 ................................... TTGTGAGCACTCTGCAATCTGCAAAATAGC 5115 35 100.0 30 ................................... GTCTTAATCGTAGGAAAACTCTTCCCCGAC 5180 35 100.0 30 ................................... AAAAGGCAAATATTACGTTAAGGCTGGACA 5245 35 100.0 30 ................................... AAAAGGCAAATATTACGTTAAGGCTGGACA 5310 35 100.0 31 ................................... TGCTTTTCCACCCTTACTGCTCCAAATTTGC 5376 35 100.0 30 ................................... CGCTGGGTGTTTTTAGACTGGGAAGAAAGC 5441 35 100.0 31 ................................... ATCATTGACGGTGCTTTTGTTGATTTTAGCT 5507 35 97.1 0 ..................................T | ========== ====== ====== ====== =================================== =============================== ================== 9 35 99.7 30 GTTTTAGAAGCTTGTTAATCCTCAAAAGTTGAAAC # Left flank : TTTTAAATAGCCACATAAATGAAAAATATATGACCAAGATATATACAAAAATGGTTTCAGACTTAACTGATGCGCAGCGAACTAAGATTTTTCATAAATGGGATGAACTCAAAACTTTGGTTCAAGAAGAACTATTTATGTCGGATTTACCGTTAGAAGTGGCACCCGACCTAGATCTAAAAAAGCTTTTCAAATTTTCAGATTTAAAGCTAGTAAATTCTGCCCCATGTAAGCCATATGGTATAATTGAAAATGTTATCAAGATACATCAATGCTTAAATTTAGAAACAATTTTAGTTTTCTGTAATCTTTCGCATTATCTTGATAATACACAAATTCTAGAACTAAAAAAATTGGTTGAGGAAACAGGTCAAGGAATCATTACTCTTGAGTACAATGATAAAAGTTGGAATTGTAATAAAGATATGACTAATTTTTATTATATTGACAAAGATTTAGTGGATTTCTACTGAAACTGATAGATTAATTAAGAATAATCA # Right flank : GATTTTGCTCTGGTCCCCAGGCTTATAAAAATGGCTCTTTGTCAAATCCTGTTGATAAGGGTTGATATGAGCTTGAATTGAAGATCCGTATAGTATTAGTTTAGATACTATATGGATCTTTTTCTGTTACCAC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGCTTGTTAATCCTCAAAAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 9552-8487 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMAY01000001.1 Lactobacillus sp. B40 sequence001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 9551 28 100.0 33 ............................ CTAAGCATAGCTTTCGAGCTAATCGTGCACTAT 9490 28 100.0 33 ............................ TGTTGGAAAAGGTGTAGTCATGTAGTCAAATCG 9429 28 100.0 33 ............................ CGATCTTAAGCAAGGTCTTGGCAGCGTTGCCAG 9368 28 100.0 33 ............................ CCAGTCAAATCATCGTGACCCTCAACGGAAGCT 9307 28 100.0 33 ............................ TTGACCAGCCAACGTTTTGCAAACAATATTTGA 9246 28 92.9 33 .............GA............. TAGTCCAGATGCTTCCAAGCTCAAAGTGGATAA 9185 28 100.0 33 ............................ CAGAAAAAAAATTGACGTGATTAGTATGCAAAA 9124 28 100.0 32 ............................ CAGAAAAAAATTGACGTGATTAGTATGCAAAA 9064 28 100.0 33 ............................ CAGTCACAAAATGGTTAATGTTTTACCAATTAA 9003 28 92.9 33 ..............A.....A....... TTACGCGTGACTTAGTGCTTGACTCAACTAAGA 8942 28 96.4 33 ..............A............. TACCGGTAATTCTTTGGTTGATATACCCGAAAA 8881 28 100.0 33 ............................ CCGACAAAAGCGGCCGTGACTACTTACTAAAAG 8820 28 100.0 33 ............................ CTGGGACGACTTAAAGTCGCTGAAGGAGTTGAA 8759 28 96.4 33 ..............A............. TTTGCTTCGAGCGTTTTTTGGCACCGTGAGCTG 8698 28 100.0 33 ............................ CGCGTATAGAAAACGCCTCCGGGCGGCCGCGCG 8637 28 92.9 33 ............C.A............. TTCAGCCACCACGCGCCGTCATATTTGGGACTT 8576 28 89.3 34 .............GA...........T. TTTCAATCCACGTACCTCCTGCAGGGTGCGACAA 8514 28 71.4 0 A........A...GA.T.....G..G.T | ========== ====== ====== ====== ============================ ================================== ================== 18 28 96.2 33 GTGTTCTCCGCGTATGCGGAGGTGATCC # Left flank : GACAAGTATTCCAGACAAGATTGTGAAATTAACAGGCATAAGCAATTCGGTGCTGCAAGAGAAAGGTGAAAACCTGGACACCGTTTTGGAAGAGTTTGCAACTTTTGTTGGTGAGGAACCGTTGGTTGGTTATAATATTGCTTTTGACAGTAATTTTTTAGATGATGCATTTCATAAAACAGGCAGGGATGCGCTAAAAAATAGATTTATTGATTTGCTACCAATAATAAAAAAGAAAGATATATTTTTAGCTAATTATCATTTAGAAACAGTTCTTCAGAATTATGGAATTGAAAACCAACAACCCCATAATGCATTGTCTGATGCCCGGGCAACAATGGCACTAGCTGAAAAAATGATAGATATGGGGTATCTTCGAATATAGTGTTTTTTGTGGAATATTCGACTAGTAAAGGTTTAAAATCTAGCGTAAAATCAAAAGTAATGGAATTATTGCTTTGGCGTCCTGAGGAAGCTTGATTATAAAGGGATCTTTTAGT # Right flank : CATGTTTGTAATTGCAGCATTCATTGGCAAAGGGGCCTGATAGAAAAGCTGACTTTGGCGCAAAACAAAAATCCTACTAAATCTTGGTATTAAAACCAGGAAATAGTAGGATTTTCTGTTTATTTAATAGTCAAAAATTGTTAATGGGTCAATTTCTGCTAAAACAATTTTTTACCCATTCATATCTGCAAAAACTTCTTCAGCTAATAGCCGCATATTTTCGTTGATAAATTGGGTATCGCTTTTGCTTAAGTCGGTCGATTGGGGAAAATTGAACTTCAGTGCTTCGCGTCCATACAACACAGTGAAGAAATTCTGCAGCTTAAGCTTTACTTTGGTTTCATCCCTGATCGCATACTCCTGGAGCACCTTTTTATACAATAATTGATTGAATAATTCTGCTGCGGGAGCATACTCCTCTTGTGCTGCTCGATAGGCAGCAGGATCGCGGAGTCCTAGTAAAAAGACCGCTTTATGATTTTCAACATATGCAAAATATT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTCCGCGTATGCGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //