Array 1 25-358 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTSD02000267.1 Oceanospirillum linum strain ATCC 11336 NODE_273_length_380_cov_0.758893, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25 29 100.0 32 ............................. AGCTTTGGAGTACCGCTCACCAGGCTGGAGAA 86 29 100.0 32 ............................. ACGATATTACGGCGCACACAACAAGCACCAAC 147 29 100.0 32 ............................. CTGGATTATCCATATAGCCGGGCTTATCAGGC 208 29 96.6 32 .........................T... GTATTCGGTAACCTCGGTTGCCCGGCTACGAT 269 29 100.0 32 ............................. CGTTTTGATAGCTGGCCGCGTGGCAAAGGTAC 330 29 96.6 0 .........................C... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GTGTTCCCCGTGCCCACGGGGATGAACCG # Left flank : GTATGTTAAGACCAACATAGTCTTG # Right flank : TTTAGCCTGCAACTTGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGCCCACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTGCCCACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17335-22304 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTSD02000007.1 Oceanospirillum linum strain ATCC 11336 NODE_7_length_142567_cov_693.97, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17335 29 100.0 32 ............................. AATTAATGAAGCCCTTGGGCCTAAGAACTGAA 17396 29 100.0 32 ............................. CACCAGTTGCTCAACGGAGTAGCCCGCCTGCC 17457 29 100.0 32 ............................. TATTTTGAGGATATGCGCCTGATTAAACGCCG 17518 29 100.0 32 ............................. AAATGAGCAAAAAAACTGCTTCAACCTCCAGT 17579 29 100.0 32 ............................. CCTATCCGGTTCAGATTCTGGTATAGATAAGT 17640 29 100.0 32 ............................. AGTATGCCGGAAGAGGTCAAGTCTGCGGACAA 17701 29 100.0 32 ............................. CTGTAACGCCCGTATTTTTTTCCAGTAACACA 17762 29 100.0 32 ............................. CTGTGCAAACAGCTTTTCCATATCTTCTTTTT 17823 29 100.0 32 ............................. TCGGTGATTTACTCAGCCAGGCATTAAACACG 17884 29 100.0 32 ............................. TACCACCTGATCCGCTCCGGCGTTACCGTCAC 17945 29 100.0 32 ............................. CCGTCTTTTGCAGATACCCAGACATTTAAATG 18006 29 100.0 32 ............................. CCCTGCCCGACCTGCTTTGGTAGCGGCTGGGT 18067 29 100.0 32 ............................. CGTTTATAACACAGGCTGCCGATACTTATATC 18128 29 100.0 32 ............................. CAGCTGATACTTTAAGAGCTGCTGTCTGGTCA 18189 29 100.0 32 ............................. CAGTGTGCGGGTATACAGAAACCGGTAGAAGA 18250 29 100.0 32 ............................. TATGAGGAAAACATACTGGAGATTAACGCCGG 18311 29 100.0 32 ............................. GTAGACGGGAAGTCCATAGACCCTACGACTGG 18372 29 100.0 32 ............................. TGACCATCTGCTTTTGCTGATGTGCGGACCAT 18433 29 100.0 32 ............................. ATTGGGCAGACGCGCAGGCCGAACGCATTAGT 18494 29 100.0 32 ............................. AAAGAAGAATGGGTATACCGTTTTATCTTTAG 18555 29 100.0 32 ............................. CAACGGATCAGATCGTTTTTCTTGATCCCTAT 18616 29 100.0 32 ............................. GGCGGAACAGATGCAACGGCTTGGAAAAAGTG 18677 29 100.0 32 ............................. CATGATTATTCTCCGTCAGCCTTCGGCAGGGC 18738 29 100.0 32 ............................. ATCCATCGACGCCACATGGCCAAAATCATCCA 18799 29 100.0 32 ............................. CCTTGCGGCCACAGTCACAAACTAGCTCCCCC 18860 29 100.0 32 ............................. AGAAGAGCAGCTAGAGCTGGTGGCGCGACTAG 18921 29 100.0 32 ............................. GCGTACTGCACCAGATAAGGCGCTGATCGGTG 18982 29 96.6 32 ............................C AGTTCCGTTAATGGCGGGATCTTGATTCTGGC 19043 29 100.0 32 ............................. AAGGCGCTGACCCGCTGCTTGACGCCGCAAGA 19104 29 100.0 32 ............................. AGGGAAACCTTCAGGCAATAAAAAGCCACGAC 19165 29 100.0 32 ............................. CATAGTTTCTCCGGCTGGCTGAAGATGGATAT 19226 29 100.0 32 ............................. CGTTCGCGGTGCCGAACGTTCTTTGCAAAATT 19287 29 100.0 32 ............................. GATGGCGGATTAGATCAATTGCGGAGTGGGGC 19348 29 100.0 32 ............................. CTCTGTGAAGCGAAAATTCTTTAGTGCTTTAA 19409 29 100.0 32 ............................. AGATTGCAAAAACCGGCGAGACCGACACGACA 19470 29 100.0 32 ............................. ACGCTTTTTAGCGCAGAACTCAGCGTGCGACC 19531 29 100.0 32 ............................. CAAGAAGACGAAAAATGCTGGTGGGGGATAGA 19592 29 100.0 32 ............................. TGTCCACAGTATGTTAAGACCAACATAGTCTT 19653 29 100.0 32 ............................. AGCTTTGGAGTACCGCTCACCAGGCTGGAGCA 19714 29 100.0 32 ............................. ACGATATTACGGCGCACACAACAAGCACCATC 19775 29 100.0 32 ............................. CTGGATTATCCATATAGCCGGGCTTATCAGGC 19836 29 100.0 32 ............................. GTATTCGGTAACCTCGGTTGCCCGGCTACGAT 19897 29 100.0 32 ............................. CGTTTTGATAGCTGGCCGCGTGGCAAAGGTAC 19958 29 100.0 32 ............................. TTTAGCCTGCAACTTGATTGGCTGAATGATGC 20019 29 100.0 32 ............................. TCGTGTTTAGTGCGCTCTTTGTGCTGGGCTAT 20080 29 100.0 32 ............................. GCATCTGCCGCCAACGCGGGCAGCGGGTAATC 20141 29 100.0 32 ............................. CTACGTCAGTCCGTTGACTTAGAAACATCCTA 20202 29 100.0 32 ............................. CACTTAAACCTTATAAGGGAAATTAAGGAAAA 20263 29 100.0 32 ............................. CTGGATTATCCATATAGCCGGGCTTATCAGGC 20324 29 100.0 32 ............................. CGTTTTGATAGCTGGCCGCGTGGCAAAGGTAC 20385 29 100.0 32 ............................. TTTAGCCTGCAACTTGATTGGCTGAATGATGC 20446 29 100.0 32 ............................. TCGTGTTTAGTGCGCTCTTTGTGCTGGGCTAT 20507 29 100.0 32 ............................. GCATCTGCCGCCAACGCGGGCAGCGGGTAATC 20568 29 100.0 32 ............................. CTTACGGCTTTAATGGATCTGATCACGGGCTG 20629 29 100.0 32 ............................. TGCTCCAGCCAGATAATTAACAGCATCAGCTA 20690 29 100.0 32 ............................. AAAAAGCAGTAGCACTGCTAAAAGAAGGTTTT 20751 29 100.0 32 ............................. CGCACCCAGGAATTAAATATGATGCAATTTAT 20812 29 100.0 32 ............................. CCATGATTTACTCCCTGAGTTGAGTTATCCAC 20873 29 100.0 32 ............................. CTACGTCAGTCCGTTGACTTAGAAACATCCTA 20934 29 100.0 32 ............................. CACTTAAACCTTATAAGGGAAATTAAGGAAAA 20995 29 100.0 32 ............................. AAATGATAGATGTAGAGTTCGATGGCGATGTT 21056 29 100.0 32 ............................. AAATTGAGCGAGTTAAAGAGATTGGTTTTTGC 21117 29 100.0 32 ............................. GTCGCCCTGATGCATATTTGGTTAACACGCAC 21178 29 100.0 32 ............................. TGAAGTTGATAAGACTCGTATAGAGAATAAGA 21239 29 100.0 32 ............................. TCAAAAAGGCACAAAAAAACCGCCGTGGTGGC 21300 29 100.0 32 ............................. TGTTCTAGTACCTCATCAATGTAGGTGTCTTT 21361 29 100.0 32 ............................. TGTTCTAGTACCTCATCAATGTAGGTGTCTTT 21422 29 100.0 32 ............................. TTTTTGGCAATGTTGAAACGGCGCGTCTTGAA 21483 29 100.0 32 ............................. AGGTGTTAACGCCACGGGCAAAGGGAGGGAAT 21544 29 100.0 32 ............................. TGAGTTTGTGCCTGGCGATTGGTGATCACGGG 21605 29 100.0 32 ............................. CATTTAAAACAGCCGCTGAAGCCGCTGCCATT 21666 29 100.0 32 ............................. ACCGCCACATGCCGGAGATCACAGCACCGGCC 21727 29 100.0 32 ............................. TGCTTTTTGCGCGGTTTAACGACAACTGGATC 21788 29 100.0 32 ............................. GGCATGACGCCTGACAAGCTGCGCGCGATTCT 21849 29 100.0 32 ............................. ATATTCTCCGCAATCTCTGCAATATAAAATCA 21910 29 100.0 32 ............................. CGCTCCTCTTCCAGCACCTGCGGGAACCACGG 21971 29 100.0 32 ............................. CATAAGCACTTTTTCATGATCCGTATAGAGAA 22032 29 100.0 32 ............................. CCGACACAGCAACATCGCGCTCATAAAACGAA 22093 29 100.0 32 ............................. CGCGTGTTGTGCTTGCAGCCCTCAAAGGAGCT 22154 29 100.0 32 ............................. ATCTATTTAAACGCCAAGCCAGCGGGCAAAGA 22215 29 100.0 32 ............................. GAACAGGACATTTTAGAGTTGCAAATGAGAGT 22276 29 89.7 0 ........T.........A.......T.. | ========== ====== ====== ====== ============================= ================================ ================== 82 29 99.8 32 GTGTTCCCCGTGCCCACGGGGATGAACCG # Left flank : AGAGGTATTAGCCGCCGGTGAAATAGAACCTCCGAAACCACCCAAAGATGCCCAGCCCCCTGCAATACCGGAGCCCGAAGCAACCGGTGATTTAGGCCACAGGAGCCACCAATGAGTATGTTGGTCGTCGTGACTGAGAATGTCCCGCCCAGACTTCGGGGGCGGTTAGCCGTCTGGTTGTTAGAGATTCGCGCGGGGGTGTATGTAGGGGATGTATCGAGAAAAATCAGAGAGATGATCTGGCAGCAGATTAATGTACTTGCTGAAGATGGCAATGTCGTTCTCGCGTGGGCAACCAATACTGAATCTGGTTTTGATTTTCAAACCTATGGTCAGAACAGGCGTATTCCAATCGAAATGGATGGTTTAAGGCTTGTTTCATTTTTGCCTTCTGATAACACTTGATTTGTCTGCTCTTTAATAGTGTAATTTTTGCTTATCTTGTTGGTAGATTTTTTATGGGATAAAAAGTCCTTATAAAACAATCGCATCCAGCAAGA # Right flank : GTCCGGTGCAGGCTGCTTAGAAATGATGTCTGTGTCGCCCTGAAGGACGACCTACGTTCACCGGCACGCAGGCGGTTTAGAAATGATATCCGTGTCGCCCTGAAGGACGACCTACGTTCAACGGCACGCAGGCGGTTTAAAAATGATATCCGTGTCGCCCTGAAGGACGACCTACGTTCACTGCCGCGCAGGCGGTTTAGAAATGATGTCTGTGTCGCCCTGAAGGACGACCTACGTTCACCGGCACGCAGGTGGTTTAGCAATGATATCTGTGTCGCCCTGAAGGGCGACCTACGGCTGTTTTTGGCGCTACGGGTTTGGGGTGGTTGTAGTGGGAGTTTACTGGTCTTTATTAAGCATCATCAGGACAACGCTCTGGGTCTCAGCGGTTTCCCGGTAGCTTTGATCCCGGCCTGATCCGCCGCCGTGGCCGGAGTCCATGCGGGTTCTTAACCAAACCTTTTCTATGTTTGCTTTTTTCAGTCGATAGGCCCATTTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGCCCACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTGCCCACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1035443-1036009 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTSD02000001.1 Oceanospirillum linum strain ATCC 11336 NODE_1_length_1127340_cov_774.617, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1035443 28 100.0 32 ............................ TTCAGGGTGACGGAAGCCGATGTCGTGACCGG 1035503 28 100.0 31 ............................ ACTGGTTAATACCTCAGATGACGAGGCGTTT 1035562 28 100.0 33 ............................ CAGGTTCGTTTAAAACTGCGTCTGCTGTGTGGT 1035623 28 100.0 32 ............................ TTGTAGCCCGTCGAGGCGCGATTAACGAAGCC 1035683 28 100.0 32 ............................ CGATGCAATGACAAGATCTGCGTCAGTATAGC 1035743 28 100.0 32 ............................ AATCACCAAGGTTAGTTACTATTTGAATACGT 1035803 28 100.0 32 ............................ AGCGGTTTGATTTCGATGAGGTAGGTGCCCGG 1035863 28 100.0 31 ............................ GCTCTGACAGCTTCAGTGAGCACTGAAATGC 1035922 28 100.0 32 ............................ TTCGTTGGAATTAAAACCTCATAGGTTTGCAA 1035982 28 85.7 0 .........T..G...........C..A | ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.6 32 GTGATCTGCCGCATAGGCAGTTGGTAAT # Left flank : CTATTTTCTGACAATGGCTGAAAACGATCTCTTTGAGATGACTGAAATCGTGCAAACATCACTGACCGATAAAAAGGGAGTTGCATTCGTAAGAAACCAAAAAGCAGGCAAGCTCACCTCTGCCTCGAAAGCCCGCCGGATCAGAAGAGCAAAGCGGCGGGCAGAAGCCAGAGGAGAGGTCTATAAGTCCAGAAATCAAGAATCGGATAGAGAGCTGGATCACTTCCACAGTATCCACATGGAAAGTACCAGTACAGGCAAGGCATTTACTCTTTTCGTAGGGAAAGTCGAAGAACCCGGTACCGGCCTGTCTCAAAAAGAATTCAACAGTTATGGACTATCATCTCAGAATCAGCAGATGGTATTGCTACCAATAATTTCATAAACGTCTGAAAAGGCATTAATTTCAAGTAGTTACAATTAGGCTGGATTTTTTGGGCAAAATAACTAGATTAAACATAACTCTTTGAGTTTAAAGAAAGAAGTTTGGAATATTCATT # Right flank : ATTTTTTAATTGAAGATCCTAACTTTGAGCATAGTAATAGGATGCTCTTCAACGGCGTAAGGAGGAAATGGTGAGCAACCCAATTTCAGATTCAAAAGCAGGCAATTCAGACGAACCAGTTCCTCATAGCTCAGAAGCAATTTACCTAAATGATCGTGAGTGGGATCGCTTAATGGAGCTTATTCAGGCTAAGCCAGCAGAACCAACCGAAACACTACGAAAGATCATGCAATCGGAACATCCAAATATTGCTATCGATCTTTAGATCAAATGATGGCTAAACCCAGATGTGATTTTAAAGTGCAGCTCTGCCGAATAGGCAGTTGGTAATAAGCCCAACCTACCTCTACATGTGAGCGCTACATTATCTGCCGAATAGGCAGTTGACGAATGAAAGCCCGAGAATTTCTTGGACTGTTCACATCAGAACGGTTTATTAAAATTTTTTCAACTTATGGGTTAAATTGTATTTCAGCTTATGGTTTAGAAGGTGACGTAAC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCTGCCGCATAGGCAGTTGGTAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //