Array 1 161019-162269 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUYX010000004.1 Halomonas sp. FME63 NODE_4_length_268710_cov_267.382, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 161019 29 100.0 33 ............................. GCTCTGTCTGCTACTCGCTGGGCTTCTTCCTGC 161081 29 100.0 32 ............................. GTATGTTTTATCTGAAGCTTCTGCTGTGAGGC 161142 29 100.0 32 ............................. ATAATCCCATACAGATCTACCTGCGTGATACG 161203 29 100.0 32 ............................. AGGTTCTGTCACCTAGTGCACTCGAAGTAACC 161264 29 96.6 32 ............................T TGACGCGATGACCGACAGCATTAACGACGATC 161325 29 100.0 32 ............................. CCCGGCGTGCCGCTGGTGGCATTTTGCTGGTC 161386 29 100.0 32 ............................. TATCACGGTCATCCGCAGGAATGTGTGTCAAT 161447 29 100.0 32 ............................. TCTGGATCGTTGGCGGAATAGACGCAGTTCAG 161508 29 100.0 32 ............................. TCGAAATTGATTTTACTACCACGTGTAGTGTG 161569 29 100.0 32 ............................. CCTGCTCATTCCGAAGCGCCGCATTGGTCAGA 161630 29 100.0 32 ............................. ACGCGCCGCAGCTACTTTCACGATCTAAATCA 161691 29 100.0 32 ............................. CCTAGCCAGCCACATATAACCCAAAGCAATTG 161752 29 100.0 32 ............................. AGGTGGTGTGCCACGGTGATACGGTCATCGTA 161813 29 100.0 32 ............................. AACCCTTGCAGGAAGCGGCGACCCAACAGATC 161874 29 100.0 32 ............................. GCCTGCATGTTGAGCCTGGGCTTTCAGATGTG 161935 29 100.0 32 ............................. CCCAGCGTCTGTTTTGCATCACCCCACAAATC 161996 29 100.0 32 ............................. AGAAGGCGGCTGGCCGATCACTCATGCAAGCC 162057 29 100.0 33 ............................. CAACAGGAGCGATGCCGTGGAAAGCAGGCCTAC 162119 29 100.0 32 ............................. CTTTTTGCTGATTGCGTTCATGCATGCACCCT 162180 29 100.0 32 ............................. ATGGCGCCCGGAATTTGTCCGAAGTGCTTGAT 162241 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.8 32 CCGTTCCCCACAGGCGTGGGGATGAACCG # Left flank : CCGCCAGCTGATTGCCCGTGAAAGGCTGATGAGTAAATACATCGAGTAAGTAATATTCAGCGATTTTCATACTGGTCTCTTCAAGTTGTGTGTTTCCAAAAGGATTTACGGCCCTCCCTTTGTGCCTGGGCACGGGTGATGCCAATATCTCTTAGCAGCCGGTCATCAAGTGTCAGCAACTGGCGGCGGCTACGTTCGCGGTGGGCGCATATTTGAGAGCGTAGCTGAGCCAATGAATCATCCAATACGCACTACTAACGAGCGCCCTTCACGAGTAACCCGCCGTTGGCGAATGTATATGCCATAAGAGAGGTCGCTCTTCATAAAAACGATGCATACTTATACCTTTGGCCGAGGCTTGGTGCGATTTTTATAGATTCCTGCAACATTCTGATTTTACTGTTCTTTAAGAATATCTTTCTGATCAAAAATTGACCTAAATCGCTGGTGGATTTTCTACTGCCTATTTTTATCTTGCAGAACAGTCATCTACAATTAGA # Right flank : GTATATATAAAAAGGAGGGGTATAAGGGGTGTACCCATAATGCCTACACACATTGTAACGCGTAGCGTTACGCGCTACAATGTGTGTAGATTCGACGGCAAGGGAGGCAAAGCGATGCGATGATAAAGAAAATCAAACACAAAGGCCTGAAACGGCTTTATGAGCGGGGGGAGCCCCAAGGAGTACAGCCTAACCATGTAGACGATTTAAGAGACATACTGGCAGCACTGGATGCCGCAACCAAGCCAAACGATATGGATTTACCAGGTTTTGATTTCCATGGCTTGAAAGGTGATAAGAAGGGCTTTTTTTCAGTGCATGTAAACGGTAATTGGGTAGTGATATTTACGTTTGATGGGGAAGATGCACACCTTGTTGACTATTTAGACTACCACTGACGGCGGCGCTCCTTGATAACCGACACGATACGGTTATCAAGGGCCACCGGATGGTTTCGCCACTTGAGCGGTAGCCACGATTGCACAGCCTCTAAATATACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCACAGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCACGGGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 173046-174368 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUYX010000004.1 Halomonas sp. FME63 NODE_4_length_268710_cov_267.382, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 173046 29 100.0 32 ............................. AACTGGCTGTTACTGGCAGCCTCAGTTATGCG 173107 29 96.6 32 ............................T AAGCGCCTCAGCGCTACCGGCGTTTTCTACGC 173168 29 100.0 32 ............................. CGGCGGTTGAACTGTCGGTATACGGTGCCGGT 173229 29 100.0 32 ............................. CCCGACGGCACGCGCACGCTGATTATTGAGCC 173290 29 100.0 33 ............................. CAGAGATTTTGCAATGAATGCAGCAGTTGATGT 173352 29 100.0 33 ............................. ATTACCGGCATTATCTTGAATTTTTTCTAGGCC 173414 29 100.0 32 ............................. GTGGTGGGTGGTGATGGCACGGTTAAGGACTG 173475 29 100.0 32 ............................. GGCGCTGGCGTTGCTACGCGCGGCTTGCAAAC 173536 29 100.0 33 ............................. AGCGCATATACTCGCTAGTGTCCCTGAATTGGC 173598 29 100.0 32 ............................. GCGACCGATAGCGCCATTGCCAATATAGCGTC 173659 29 100.0 32 ............................. ATGACTATGGGGCCAAACCCTAATGGTTTTAG 173720 29 100.0 32 ............................. AGATTCAGCTAACTCGGGAGCTGTGATCTTCT 173781 29 100.0 32 ............................. GTCTTACGCCGGGGATTCCTGACACCTTTGTA 173842 29 100.0 33 ............................. TACCTAGAGCCTATACTGAACGGAAAATCCAAA 173904 29 100.0 32 ............................. ACCTGCAATCGGTCACAAACATTGATTGGGGG 173965 29 100.0 32 ............................. CTGTACCGCTTGGCCTACCATCGTGAGCGCAT 174026 29 100.0 32 ............................. CGCCTCTTTATGCCGATAATACGCGGCCATGT 174087 29 100.0 32 ............................. AATACGACCGCTTACTGGCTGCCGAGGCCAAG 174148 29 96.6 32 ............................T GTTTTTTTAAAAGTCTATGATTTTGTTGAGAG 174209 29 93.1 32 ...........................TC AAGTCCTGAACGTCCTAATGGCTCATGGAGAT 174270 29 72.4 40 AT.....T.A.T...AT...........A AACTCAAGATAAGACGGATAATGTTGAATTTATCTTTTAT 174339 29 89.7 0 ..AC........................T | G [174356] ========== ====== ====== ====== ============================= ======================================== ================== 22 29 97.7 33 CCGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : AGATCGAACCGCCACCAACCCCGGCTGATGCCGTGCCGCCGGCCATCCCCGAGCCGGCATCAATAGGCGATAGCGGCCACAGGAGTCATTAACATGGCCATGCTCGTCGTCGTCACCGAAGCCGTGCCACCCCGCTTGCGTGGGCGGCTCGCCGTCTGGCTGCTGGAGATTCGCGCCGGTGTCTATGTGGGGGATGTCAGTAAGCGTATCCGCGAAATGATCTGGGAGCAGATCGAGGTATTGGCCGAGGAGGGCGGCAACGTCGCCATGGCTTGGGCCAGCAACCACGAATCCGGTTTCGAGTTTCAAACCTTCGGCGATAACCGCCGCGTCCCCATTGACCATGACGGACTACGCTTGGTGCGTTTTTTGCCGCCTAAGGATAAGTGACTGTTTTTAATGCTCTTTAATAATATAGAGCTGTTCAAAAAATGATCAAAATCGCCGGTAGATTTTCTGCTGGCGATTTTTCTTTTTGAAAACAATTGACTACAATTAGA # Right flank : TCTGGGCTAGTAACTCACGTCAGATCCATAAAGGGGTTGTAGGCGACTTCCCAGTAGTGGCCTTCCGGGTCGCGAAAATAACCGGAGTAACCGCCCCAGAACACTTCTTCTGCTGGTTTGATTAGCTCGGCGCCTGCGGCAACCGCTTGTTGAAGCACTTGGTCAACGGCCTCTTGGCTGGCGACGTTGTGGGCCAGCGTGATACCGCTGAAACCACCTTTTGAGTCGTCGGCAATGCCGATATCCTTAGCCAATGACGTTCTGGGAAAGAGCGATAGCCAGGCGCCTTCCATCTTGAAAAAGGCCACCTCGTCGCTGTCTGTCTCGTGTTCTGGCAGTCCCAGGCCGTCCCGATAGAACTGGATGGCGCGCTTTAGGTCATGCACACCGAGGGTAATCAGGCTGATCTTGGGTTTCATAGCGGTGCCCTTTAGATGTTGTTTTAAATAGGCCGCTGTCACAGGGTGAGGTTGTCTTGGCGCACGTCCAGCTGTTCCAGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 151785-140284 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUYX010000003.1 Halomonas sp. FME63 NODE_3_length_285048_cov_286.698, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 151784 28 100.0 32 ............................ AGCGTGGCCAGGCCAATGAACGCGGCCTCGTC 151724 28 100.0 32 ............................ TGAGCACCCAAGGCCGCGTCAACGCATGCCGA 151664 28 96.4 33 A........................... CGGCTGAAGAACAAAGCGCAATAACTGAAACGC 151603 28 100.0 32 ............................ GCTGAGAAAGAAAATCGGCGGATTGATATTCG 151543 28 100.0 32 ............................ TGCTGGTTACCGCCTTTCGCCTTCATCAGCGT 151483 28 100.0 32 ............................ TAAAAAAAGGTGACTGCATGAAACACACCCAC 151423 28 100.0 32 ............................ AGCAGATAACACTCCATTGAATAACACGACAC 151363 28 100.0 32 ............................ ATCACGGCAACTGTGCTGTTATTAGCGCCTAC 151303 28 100.0 32 ............................ CACTCGGGAACGTAGAAACTGCTGTAAAGGTC 151243 28 100.0 32 ............................ GGAGAAAACACAATGCCAACACTATTCAGCGC 151183 28 100.0 33 ............................ GATGGAGTCCACGATTGATGCGCCCATGGCGAC 151122 28 100.0 32 ............................ ATCAGAACGCCTCCTGATTATTATCTGATTCA 151062 28 100.0 32 ............................ TTATGGCCCTCTAGCTTTGCCATATCGTCCAG 151002 28 100.0 32 ............................ ATAAAAAAAGCCGCCAGCACAATGGTCGGAAA 150942 28 100.0 32 ............................ ACAAATGAGGCCGCCATCCCAGCGCACCGCAA 150882 28 100.0 32 ............................ TATCTATGGATCGAGAAATAACTATTGAAGAG 150822 28 100.0 32 ............................ TTGATCAAGTCGAGTTTTTGCAGCAGGCGGGC 150762 28 100.0 31 ............................ TTTACCTGCCGCCCACCACACGCCCGGCAGC 150703 28 100.0 32 ............................ CAAACCCGTGACGGTTTCCATACCCCTATGTC 150643 28 100.0 32 ............................ TTGAGGATCGCATCATTACGGGGGTATGGCTT 150583 28 100.0 32 ............................ AGGGTGGCCACGGCTAACAGCATGATCAGGGC 150523 28 100.0 32 ............................ AGCAAGGCGGCCGTTGGCGCCGCGAAAAAGGC 150463 28 100.0 32 ............................ AGAAGGAAAAGCAGGCCGTCAAAACAGCGGCA 150403 28 100.0 32 ............................ GCGATACTCTGCTGCCGGGTCGATGTCACAGA 150343 28 100.0 32 ............................ ACTGGCAAAAGTCTGGTTCGCTGGCATCTTCA 150283 28 100.0 33 ............................ ATCGACGCAGAGCGCAAGCGGTGGCGTGATCAG 150222 28 100.0 32 ............................ AATGGATGAGGCGCCCAGGGATGGCACAAAGA 150162 28 100.0 32 ............................ TGAACGACACGGCCGGGACGGCATGCGTAGCC 150102 28 100.0 32 ............................ AAACCGCTTGGCAATATCAGTAGCATTGATCC 150042 28 100.0 32 ............................ ACTACGAGCATCGCGTGGTATGGGGCGCGCTG 149982 28 100.0 32 ............................ CTCTTTTCTCCGGGCTTGACGACGAACTGAAT 149922 28 100.0 32 ............................ ATGGATTAGCTGACCGCACATCCCGCTATAAC 149862 28 100.0 32 ............................ AGCCCCATTGCGCCGGATGACCATGAGCTTGC 149802 28 100.0 32 ............................ TGTCGACCCAATGACTATAGCGTCGCCTTTAA 149742 28 100.0 32 ............................ TGAATGTCGCCACTAGCGACACATGGATGGAT 149682 28 100.0 33 ............................ CTTCAAAATCGCCCGAAGCAAGACGGCTATCGA 149621 28 100.0 32 ............................ AAGACGGAAAGGCGGCTTTTCCTTCTGCTAGC 149561 28 100.0 32 ............................ CATGGATGCATACACAGCGGGATTGAGAGAAG 149501 28 100.0 33 ............................ AAAAACATCAGGGCGTAGCTGACTGGCCTTGAT 149440 28 100.0 32 ............................ TGCTAGGCAAAGAGCCTCTTGCATTGCTTGTT 149380 28 100.0 32 ............................ TATTTCCCAGCCTTGCCAGACAGATGCCCTTC 149320 28 100.0 32 ............................ GTGCGAAAACCGATTACATTTACAATGTGGAA 149260 28 100.0 32 ............................ ACGGAGTGAATCAGGCCGTTGATTTCCTGCCA 149200 28 100.0 32 ............................ ATGTGGTCGCTGACGCTCGACGGAATTGCCGT 149140 28 100.0 32 ............................ TCACGGCGCACATATCCATCATCATGATCATG 149080 28 100.0 32 ............................ TCAGTGGGCGGCCTTGGTCTTGCTGCTTTTCT 149020 28 100.0 32 ............................ TGCTGCGTGACGGCATCCATGCTGCGTCCAGC 148960 28 100.0 32 ............................ TGTAATTCCGAACAGGGCTTTCCTGCCCGGTG 148900 28 100.0 33 ............................ CTGAAGGCGCTACATTTACGGGGAGCGAGGAAA 148839 28 100.0 32 ............................ TACCGCCTGAGTACAACCCGCCTTTTCAAAAG 148779 28 100.0 32 ............................ AAGCAGATCGATGTCGTTTTCAATCGCATGGA 148719 28 100.0 32 ............................ ACTTCGCCGACGTTCTCGACGACAAAGCGCAG 148659 28 100.0 32 ............................ AAGACGTATCAGCTGTGTACGACCCGGAAACC 148599 28 100.0 32 ............................ GTTTAGCGATGCACCGGGTGCAATCATCGGGA 148539 28 100.0 32 ............................ AGCAGCGAGCGGGGAAGTGGCGCACTGGATAG 148479 28 100.0 32 ............................ AGTTGAAGATGCGGGAGGGCGAGGTATGAAGC 148419 28 100.0 32 ............................ TGTTCATCGGTCAAGTCATTGGCTTCTGCCAG 148359 28 100.0 32 ............................ AGCAAATCCAGCGCGATGTGATCGATCATCTG 148299 28 100.0 33 ............................ CCAAAACAGTCGATGAGTTGCGTGCGCTCGTAG 148238 28 100.0 32 ............................ AAGAAGATTTTGAACAGTTAGACTTGCGTTTA 148178 28 100.0 32 ............................ TGTTCGGGTGACGATCGGTCAGCAATAACAGG 148118 28 100.0 32 ............................ AACAAGGCGGCCACCATGGCGTGTTCGGTGAC 148058 28 100.0 32 ............................ AGGCGGGTAGTCGGGCATCATGCTTTCACCCA 147998 28 100.0 32 ............................ GACGCCGCCGTGTGGGCCTTTGAAGAACATCG 147938 28 100.0 32 ............................ TCTTGATCAATAGCGCGAATGCGGTCCTGCTG 147878 28 100.0 32 ............................ CCCTCTATATCTGGCTGTGATGGGGAGGGTGA 147818 28 100.0 32 ............................ TGACGGCTAACTTTATTCTTAACTGCAACCGC 147758 28 100.0 32 ............................ CTGGGCTTTGCCATTCGCTTTTAAGTACGTGT 147698 28 100.0 32 ............................ ACTGGACTACCCCTCGTCGGTAGCCGCTACCA 147638 28 100.0 32 ............................ AAGGAAAAGCATTACCCTCTGGGTAACGGAGT 147578 28 100.0 32 ............................ TGAGCCGACGATCTTCGAACGTGCAGCTCAGC 147518 28 100.0 33 ............................ ATGGATGAAAATGATGGTGTGCGCACACGATTA 147457 28 100.0 32 ............................ ATTGCTGGATTAGCGCATCAATTTCCTCTTCG 147397 28 100.0 32 ............................ ACCCGGCGCACCCGTAGGTGCCCCGCGCACGG 147337 28 100.0 32 ............................ AGCTCAAACAGGCCCGCCGCAAGTACCGCGAA 147277 28 100.0 33 ............................ ATCATGACGCCACTGAGCAGGGCATGGGAACAC 147216 28 100.0 32 ............................ GTCACATCTTGCCTCACCTCGGCGAACTCGTC 147156 28 100.0 32 ............................ CAAACCCACGACGGCCAGCGCCTTCATGTAGA 147096 28 100.0 32 ............................ TGAGCAGCGGGCGGCGGTTCTTGAGCGCGAGT 147036 28 100.0 32 ............................ AATTCTATGCCTCAGCGCCGACAAAATAAGCT 146976 28 100.0 32 ............................ CCCCGAACAGCTTGCCGAGGTTCGGCAGGCCA 146916 28 100.0 32 ............................ TGCATGGCCGCGTGTACCTGCTAAAGGGCGGC 146856 28 100.0 32 ............................ ATGGGGCACCGTGCGGCGCTGATAGGCTTCGC 146796 28 100.0 32 ............................ AATAGAAGGGGTGGCCCCCTGCGAGCCTAGTT 146736 28 100.0 32 ............................ TAATTCTATGCCTCAGCGCCGACAAAATAAGC 146676 28 100.0 32 ............................ CTGTGATGTTAATAGCCCTACTGGGGTTTCCA 146616 28 100.0 32 ............................ CTAACCGAGAATGCTGGCCGCTAGCCTCTCCT 146556 28 100.0 32 ............................ TGTTTGAGAGAATGGAGTCGCACCACAGAGAG 146496 28 100.0 32 ............................ TGCAAGATGGATCGTTTGCATTGGGGGCGCGT 146436 28 100.0 32 ............................ AACGGAACATGGCCGCCATCGTCGGGAAGGCT 146376 28 100.0 32 ............................ CATCCAGAGGATTGGGATTTGCTAACCCGCGA 146316 28 100.0 32 ............................ TGAGCAACGTGCAGCGGTTCTTGAGCGTGAGT 146256 28 100.0 32 ............................ CTTGCGCCGCCATGCGCTTCGCCCAGATCCGT 146196 28 100.0 32 ............................ ATCTTCACGATCTGCTTTGATAGACCGTTAAA 146136 28 100.0 32 ............................ TAGCGCATCGATCTCCTGATGGGCCTTGTCGC 146076 28 100.0 32 ............................ TGCTTGGCAGCGTCGTTTAGACGATCCAGGTT 146016 28 100.0 32 ............................ GAGTTGGCAGAGTTAGGTTTAGCCAACCCCGA 145956 28 100.0 32 ............................ CAGACAGGGCGCCGGTAGCTCTCAATGCAGGC 145896 28 100.0 32 ............................ AGCGGCCTATCAGTGACGGTCAAATCAATCTG 145836 28 100.0 32 ............................ TGCCCAGCGCGCCGTGGGAATATTTGAAATAA 145776 28 100.0 32 ............................ ATGGCGGGCGGGGTTTGGGTGCTGTGGGGAGT 145716 28 100.0 32 ............................ TGGCCTTTTGTGTAGTAGCGGCCATCGTGATC 145656 28 100.0 32 ............................ AGTTTGAGACAACCGCCGAGGGCGCAATCCAT 145596 28 100.0 33 ............................ ATGACATATGAACACGAAGACGCAGAGCAAGAT 145535 28 100.0 32 ............................ TGCCAGTTATGCAGCGTGACGTTTTCGACACC 145475 28 100.0 32 ............................ TAGCACGTTCTCGCCGCCTGCAGCGGTCATGG 145415 28 100.0 32 ............................ ACGGCATCCCTCTCCAGCTAGACCCACTGAAA 145355 28 100.0 32 ............................ GTAACCGAACGCGCCGGAGCCGAAGAACAGGC 145295 28 100.0 32 ............................ ACCATCCGGCAGGTCGCCATCAAGCTCAGCTT 145235 28 100.0 32 ............................ ACAAGGTTATCAACGTCTATGTTTGCACCTGT 145175 28 100.0 32 ............................ ATAATCCCAAAGGCGCCAAATAGAACTACGCC 145115 28 100.0 32 ............................ GCGCGCATTTCACGCCCCAACCGGGCCTGTTT 145055 28 100.0 32 ............................ CAGACGGCCGGGGGATGGAGCGCCTGCACGCA 144995 28 96.4 32 ...............A............ AGCAATCCACTGCTAAGGCTCTCGGAGTTAAC 144935 28 100.0 32 ............................ ATTCTTCGCTTGGCGGCTTTCAACACGTACCA 144875 28 100.0 32 ............................ GCGCAGCTAGTGCGAAACCGCGTTCATGAGCT 144815 28 100.0 32 ............................ ATGTACCAATCCACAGTCTGCCCAAATCCTAA 144755 28 100.0 32 ............................ TGAAATCAAGCCGCCAGTTTCAAAAGCTGCCG 144695 28 100.0 32 ............................ GACGACCCGATCTACGACCCCGGCATCACAAA 144635 28 100.0 32 ............................ ATTGGTCAAGCGTGCGGAATATACTGGCACCA 144575 28 100.0 33 ............................ CTCGATACTTTCCAATGTTCGATCCATGTTTAT 144514 28 100.0 32 ............................ CATGAGTAGCCAAGCCCTGCATTGTCACAGAA 144454 28 100.0 32 ............................ ATCCACTCAGCATGGGCGCTGCAAAATGCGGC 144394 28 100.0 32 ............................ GTCTCACCGTAGTTGGAGTTAGCGGTTTTCCC 144334 28 100.0 33 ............................ ATCTGGAATCAGAAAACCGCTGGGCAGGTTGGT 144273 28 100.0 32 ............................ GTTGGACGGCGCCGCGAATGCTGACCACCTCG 144213 28 100.0 32 ............................ AGATATAGAAGGGGTGTCAGATTGACACCCTA 144153 28 100.0 32 ............................ GCCGCCCACGCCGGTACTCGATAACATCCTGC 144093 28 100.0 32 ............................ AGTTCAAGCACGTCCCACGCACTAAACGCAGG 144033 28 100.0 32 ............................ CGCATGATGCAGCTCGGCAAGCAGCAAGCGGT 143973 28 100.0 32 ............................ TTCATCACGTTTTTCATAGCTAGCCTCATCAG 143913 28 100.0 32 ............................ ATAAGTTAAACCTCCACGTAAGTAAGCGGTAC 143853 28 100.0 32 ............................ CCCGGGTCCAATCTATGAACCAGCTGAAGAAG 143793 28 100.0 32 ............................ GGACCGTATGAATTCAGAACAAGGGCTGCGCT 143733 28 100.0 32 ............................ TGATCTTTCAAAAGATTTTCACGTCTCGCCAG 143673 28 100.0 33 ............................ TGATACGCTGCTGCAGCATGAGGTTTTCGAGCG 143612 28 100.0 32 ............................ ATTGACCACCCCCGGTTGTAACTGGAAGTGGC 143552 28 100.0 32 ............................ TGAGACTCTCGCCCAGGTCGCAGAGGCCAGCA 143492 28 100.0 32 ............................ CGGAGAAAAACAGATCACCCAGCCCCAGCTCC 143432 28 100.0 33 ............................ TGGGACGACGCCACACCTACCGAGCGGGTAGAA 143371 28 100.0 32 ............................ TCAATAACCGATTCAGAAAGCGTATGCAAACG 143311 28 100.0 32 ............................ GGACAGATGCAAGGCATGTTCGGCATGGGTGG 143251 28 100.0 32 ............................ TGCTGGCTCAGGGGCGAAATGGCGGCATCCGC 143191 28 100.0 32 ............................ GTCAAACGCATGATTAAATTCACTCCAGTCAA 143131 28 100.0 32 ............................ AATAGCAACAATGGTCATGGCTGTCATGTGGC 143071 28 100.0 32 ............................ CGCTTGCCGGGCGTAACAGTGCAGGGCGCTAT 143011 28 100.0 32 ............................ GCGACCACGCACGTTGCGCAGGCTGTACACGC 142951 28 100.0 32 ............................ ACAATCGGATTACCCTTCGATGATAGCGCTAC 142891 28 100.0 32 ............................ GCTTGTCGCGCCGCAATAGCTTTGCGGGCGGT 142831 28 100.0 32 ............................ ATCGACGGCAACGGGTAACGATATAGAGAGTG 142771 28 100.0 32 ............................ GACTGAATAAGCTATCACATAGCACACCCTAC 142711 28 100.0 32 ............................ GCTCAATGGCATCGCTGGCATATCTGAATTAT 142651 28 100.0 32 ............................ TGATGATGCGCCTAGTCCTGACGTGTTGCGGC 142591 28 100.0 32 ............................ GCGACAGCGAACTAGGCCAGTTCGGCCTCACA 142531 28 100.0 32 ............................ CGGAAAACGCCAACGGTGTTCGTACCGCCATC 142471 28 100.0 32 ............................ ATCGCGCGGTCGCCCGTTAGCGCCACGAATCG 142411 28 100.0 32 ............................ AACCACTCTATGGAAGTGCTGCTGGATGATGG 142351 28 100.0 32 ............................ GGGAGCATGGCGGCAGTTATGCTCATGCCACA 142291 28 100.0 32 ............................ TCGCAAAACCGCCATGCACTTGGACTGGGAGC 142231 28 100.0 32 ............................ TGTACTCCCGCTGCTGCGTGTCTCGGGCAAGT 142171 28 100.0 32 ............................ TGAGAGTGCACCCACGCGCTTGGGCCTAACGT 142111 28 100.0 32 ............................ AGCGCCTCGTCATCGAGCGGTTCCTCCAGCTC 142051 28 100.0 32 ............................ GATAACCAACGATGTGCTTATATCCGAAGGCA 141991 28 100.0 32 ............................ CAAAAGAAAAGCCCCAGTTGGCGCTGGGGCTT 141931 28 100.0 32 ............................ GCAACAATCTCATTCCGTTTTGCTTCTGCCAA 141871 28 100.0 32 ............................ GCTCACCGGCACGCAACGCCACGTTCTTGGTA 141811 28 100.0 32 ............................ AAAGAGAAATACGTTTCCAACCTGGTGGGCAC 141751 28 100.0 32 ............................ AAAAGGGCAGCCCAAAACGCCCAACGCCTCGC 141691 28 100.0 32 ............................ ATCCAGCAGCTGCAGGTCAGCTGGGCGGCTGG 141631 28 96.4 32 ...........T................ AAGCGCACTGGGGAAGAGGTCAAGCGGCTTAC 141571 28 100.0 32 ............................ AAAAGGTCGTCTAGCACTCCCTCTGGTGGCTT 141511 28 100.0 32 ............................ AGAAAGAAGCCCACTTCATGCACCCAGAACTC 141451 28 100.0 32 ............................ ACCACCATCGCCGAAGAGCTGGCCAAGAAAGC 141391 28 100.0 32 ............................ TTGATATCCGCCGCGCGGCCTAGCGTATGCTG 141331 28 100.0 32 ............................ TCACTGATGCTATTGGCCTTCTTACGCCCTCA 141271 28 96.4 32 ......................T..... AATTCAAGTTCTGCCGGGGTGGTCATCGCTAG 141211 28 96.4 32 ......................T..... CTGGGGCCACGGCTTACCATCCTTGACGTCGA 141151 28 96.4 32 ......................T..... TCAGAAAACCGCGCTCTATCAGATCGCGCATG 141091 28 92.9 32 ..C...................T..... TGTCGCTCAATCGCATGCCAGCCTGCGAATAG 141031 28 92.9 32 ..C...................T..... AAGCGCATAACAAACCGTTGGGTGCAGCGCTT 140971 28 92.9 32 ..C...................T..... GGAGATTGCTCGGGAGTTTGGTGTGGCCAAGC 140911 28 92.9 32 ..C...................T..... ATGCGAAAACCGATTACATTTACGATGTGGAA 140851 28 96.4 32 ......................T..... TGAGCGGTTACCCGTTTGGCGAGATCCGCCGC 140791 28 96.4 32 ......................T..... AATACCGCTAACGGCGGGGTCAGAGCTGGCGT 140731 28 96.4 32 ......................T..... AATCGGCATCAATCACCGGCTTGCCGGGGGAG 140671 28 96.4 32 ......................T..... AGGCATTAACTAACCAGTGGGTTATGCTGCCA 140611 28 96.4 32 ......................T..... AGCAGCTGGCCGCCGCTGAGAACGGCGAGATC 140551 28 96.4 32 ......................T..... ACTCCCAGCGACGTAGCCCGTTCTGAGAGTCT 140491 28 96.4 32 ......................T..... CGCCGGAATTACCGAGGAGCAGAAAGAAGCCG 140431 28 96.4 32 ......................T..... TCAACGCTGGAGCTGCTGGAGCGCATTGCCAC 140371 28 96.4 32 .....................C...... CAGATGGTCATGGCCATGACAGCTTTAAGCAG 140311 28 92.9 0 .............T........G..... | ========== ====== ====== ====== ============================ ================================= ================== 192 28 99.5 32 GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : CGAGCCTTGAACAACTGATGGCTGTTCAGTGGCTAACCGGCATGCGTGATCACGTTAGTGTTAGTGACGCGTTGGCGACCCCGACCAATGCGAAGCATATCAACGTCGCGCGCAAGCAGTTCAATACAGGAAGCCCCAGCCGTGCGAAGCGCTATGCCAAGCGGCATGACATTTCAGAAGAAGCAGCGCGTGATATCTACGCAAAAGTAGCGGAAAAGCGTATTGAGCTGCCGTTTGTGCAGATCAATAGCCGCTCTACACAGCAGCGCTTTTGCTTATTCATTGAACATGGAAAGCCGCAGGAAAAAGCGGTGGCAGGCACATTTAACCATTATGGATTAAGCAGTAGCGCCACCGTGCCCTGGTTTTGACCCTTTTTCTTTGTATGAATAAGGGCCGCGATTAATCAACCACTTAGCGGTATCTCCCAGAAAAGGGTGATACCGCTTTTTTTGGGCAAAGCTCTTTAACAATCAGTAGATTATTTTTGGTAAGCTCTA # Right flank : AGACAAGCGTTACTATCTTTTAGCGCTGTCTTGAAATTAACGCTAGCGTTCAGCTTTAAGCAAAAGAGCCTCAATGGAGGCTCTTTGAAATAACGGTGTTGAAACTGCTTATTTATCCTTGTCCCAGTGTTCAAAGGCGCGCTTGTCATCGGGGAGCCGGACAATATCACCGATGTTGAGATCAGGAAGGCCTTTAATATGGTGGCCTTTGGTGTCCATGATGGCGGCAACGCTGCCAATACTCACGGCGTCTTCTTCTCGGTAGGCTTCCACTTTTACGTGGACAATTTTGCCTTGGTAGCGGGCGGATAAAATATCGCCGGTGCCAATGCGGGCGTGTTCATGGTGGTCGTTAGCAAACAGCTTGGATACGCTGTCTTTGCCGGGGTCTTCCCATTCGATATGTCGATGCATCATGGTTTCCTTGTAAGTGGGCCGAAAAACACAAGTGTAGTTTGATTTTTATTAGTTTTGCTAGTTATTGGTTAATGGGACCTTTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //