Array 1 32304-31255 **** Predicted by CRISPRDetect 2.4 *** >NZ_QONQ01000101.1 Escherichia marmotae strain SC342 NODE_18_length_92431_cov_172.788_ID_411, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 32303 28 100.0 32 ............................ AATTTTGCCCAGCGTTCAGCATAGCGGCGCTA 32243 28 100.0 32 ............................ GCTGGCAGTGATAAGTCTGTATATAAAGTTAA 32183 28 100.0 33 ............................ CGCGCAGTGATAAATTGTCCGCCCTGGCGGAAT 32122 28 100.0 32 ............................ ACCACGCTGGCTGCAAATATCGTGGAAAAATT 32062 28 100.0 32 ............................ ACCCATTGACCGGGAAGCGCTGGCAAAGTTGC 32002 28 100.0 32 ............................ GAAAACGGCTCGGGGGCGCTCGGCCCCGAAAA 31942 28 100.0 32 ............................ GATCCGTGGGAACGCGCCGCCGCAGGTATTAC 31882 28 100.0 32 ............................ AAGTAGTTTCAGCGGGATCAATAAAACACACT 31822 28 100.0 32 ............................ TTACGCTGTAGAAATAGAAACAGGCAACTGGT 31762 28 100.0 32 ............................ CGTAGCATGGGTATAGTGAGGTTGCCGTGTGC 31702 28 100.0 32 ............................ TGGCTTATGCCGGGGTTTTTTATAGGGGAAAA 31642 28 100.0 32 ............................ CTTCAGACCCACCAGCGACGGCATTTTTTTTA 31582 28 100.0 32 ............................ GAAAAATTCGCCTTTGGATTCTCCGCCTTTTC 31522 28 100.0 32 ............................ AGCAGGTACGCGCAAAAACGCAGAGGAACGAC 31462 28 100.0 32 ............................ GTGATGGCCGATCCTGGGCGTTCTGGTCAATG 31402 28 100.0 32 ............................ CTGGGCCATCATAACGTCGGAGATTGTCATTC 31342 28 100.0 32 ............................ ACGGAGAACATTTTCGCCTGGTTGTCCGTAAT 31282 28 85.7 0 ...........T........T..TT... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACGTGTTTTTTATTTAAGGCGCATTAATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGCTGCCTTACCACATGGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGCAAAACGGTCAAGAAGAATTTATTTAGATTGATTTGTTTGGTTACGCAATGAACACACGATTCATTCGCCCGAGATTATGGTCGTATGCGTTCTGATCAATTGTTTATCAAAAGCTACGAGGGAAATATGAGAGTGAAGAAATACCAATCGACCCATTTTTTAGAGTGACATGTAACTCATTGATTTTGTTTATTACTATTTTGACGTCTCGAAAAAGGGTATGAACCTGTGATTTTGTGATTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTTCA # Right flank : ATCCATACCCCAATATTTATTTTCTTCCTTAATCCCGGGCGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCGTCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGTAACGTTTCAAGAACAGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAACGGTGAGATAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 46970-46461 **** Predicted by CRISPRDetect 2.4 *** >NZ_QONQ01000101.1 Escherichia marmotae strain SC342 NODE_18_length_92431_cov_172.788_ID_411, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 46969 28 100.0 32 ............................ TCCTGTGGGAAGTGGGATTTGTCGGATCTTCC 46909 28 100.0 32 ............................ TCAATAGTCCCCAGCATAGCTACGGCGTTAAT 46849 28 100.0 32 ............................ GCGTAACTTCAATCAACGCCCGCTCTGCCAGC 46789 28 100.0 32 ............................ TCGACGATTTCAACAACTATCTGAACGGCAAC 46729 28 100.0 32 ............................ AAGTCCGCTCATATTCATTGTGAGATTAACAG 46669 28 100.0 32 ............................ TGTTTGTATGATGTTCGCGATTTCGGTAAGGC 46609 28 100.0 32 ............................ ACATCGCCACCGCCGAACGGTTTGTCTTCTTG 46549 28 100.0 32 ............................ AGCATCTGCATGGTGCCCGTGGTCTTAACAAG 46489 28 89.3 0 ..C.................T...C... | C [46466] ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AATTCATTGTCGAGTTGCAGGTTCAACTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCACGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCAATGGGTGCACGTCCGATGGCTCGCGTCATCCAGGACAACCTGAAGAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGATGGCGGTCAGGTCACTGTTGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCACAAAGCGGAAGCAGCGCATTAATCAGATTGTTAAGTAGGTTGGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATGGGGTGGGGGAGGTTCAGCCCCTTTTTTTGATGATGATGGTAAGTTGTTGATAATTAGTGCTGCTGGACGGTAAGGATAAAAAAGGGTGGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATGATGGCAGAAATTTAGCTGCGTTATGGCGCTCTCAACTCCGAACCATTAGCTGTGACACACAATAACAATTGTGATAATTGCGACGAGAATCAATTTCTCACACAGAAATCAATGCTGTACTAATCCTAACTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGATCTCAAAACCATTCTCCACTCCAGGCGTGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAGTATGTCACCAGTGAAGGCAAGGAGTCGTATTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGTTGGGGATGGGAACGTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCTGGAGTGATGGTTGGTTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //